Lsi11G002480 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G002480
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein SPEAR1
Location	chr11: 2521413 .. 2524715 (-)
RNA-Seq Expression	Lsi11G002480
Synteny	Lsi11G002480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAGTTCTCAAAACAAAAGGAGAGAAAGAAAAAAAAAAAGCATAAAATCTAAGTATAAATAACATAAAAATCCTAGAGAAAATCTGATCCAGCGATGCAATAATTGTTGAGACAGTGAAAAAAAAAAGGAGCTTAAAAAGAGGGGTTTGGAGATCTTTGGCTTCTCAGATTGCCGCCCAGCAACAAGCTAATTCCCACTTTCTCTCTCTAATTTCTTTTTTCTTTTTCTTTTTTTTTAAAAAATAAAAATTTCTTTTTTCTGAAGATCCTATGGGGAGTGGTTATTTTGGGGAGATGAATATGGGGAATAATAATATTGATAAGAGAAGAAGTGGGTCGCCGGCGACGGCGGCAGCGACGGGGAGGAGAGGGAGGAAAGGAGGCGGCGGAGAGAAACCGAAGCAGCCGCAGAGAGGGTTGGGAGTTGCTCAGTTGGAGAAGATCAGATTGCATGGAGAAATGGGTTGTGCTGCTTATGGCCACTTGTATCCAAATCTCTCCGCCGTAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCATGAACTTCATATTGTATTTTTTTAAATTTTTAATTCTGAAAATCTTTTTTCTTGGGGATTTTTTTAGTGTTTTGTTTGTAGACAGTATGATATATAAGTTTAGCTCAGAGAAATTAAAATTTTTATATTTTTATTGTAAGATTTTATACATGGGAACAATTTTAAATTGAAGAATTTTTCTTCTTTTTTCTTCTCTTATTATTATTTTCTTTTTTTAAAAAAAATCCCATGATTTCAGCTTGCATTTCATAGAAATTTTCCATGGTATTTTGATGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGTATTTCTTTTTAATTGCTAATTTTTCATGGATTGCAGGTTGCATTTTAATGGAGGAATTAATTAATGATTTAGGGTTTATTTTGTTTACATGTAGGGAGATGATATGAGAATGCAAACAACAGCTTCTTTTTCCTACTCCTCAACTCAATCATCTTCTTCATCTCCTAATCCCTATGCTTTCCACCAAAACTTTTTGGTAACTCTCTCTCTCTAACTTCCTTCTCTCTCTAGATTTTAATAGATTTTTTTATAAAGAATATTACTATCACATGTTACTGATATACAATATTTGTTAGCGATCAAGAGGTATGTGGTTCAAATTTTTTTCGTCCCTATGCTAAAATAAATAGAAACATCTTAATCACTTATTTATGTTCATGTTGGCAGATCTGAGTATAAATTCAATATGATTAATAAACATTTTAATGTATAATCCATAGTAAAAATATCACATTATTTGTCATAAAAAAAAGAGAGAGATATATAATTTGTAGGGATTGTGAAAGTTTGATTAATGATTGAATAAATTAGAGATTTTAATTTTTTTTTTTTTTTTTTTAAATGTTTGTTAATTATCAAGAATTTGATTTGTTTACATTTTACTTTAAATGGATCCCCAGGGAATGGGAGAACATGAAAGAGGAAACTTTAGATATGGTGATTCTCAGCCCACAACAACTTCTTCTTTAAGGTAAGATAAGATTTATACATTTATTTATTCATCATTATTTTCTAGATTAATTTTGTAAAATGAAAATTTTAATTTCATTATTTTCTATTAATGTTACATTTTTTTAAAAAAAATTAATTTTTGTAATTAATGATACTTTAGATGGGACCCAAGTAATACATTCCTGGAGACCCAACATTTTGGGCAACCAAACATGACTGGACACCTTTTCAGTCCTCATGTACAGGTTAGTTAGTATATCTTCTCTTTAATTAACTTAATTTTAATGTATTTTTAAACAAATTTATATGTTAAAAAAAACTATGAAATTCTAACAAAAATCATGCTATTTATATGCTATTTGTACCATAGAGTTATTTTATAGTCATATAGTATTAAATTTTTATCGACATGTCGATATTTCTACATTTTTATAGGTTCGACGTCGATATATATTAAGGATGAATTAATATTTATATTATATCGTAGATGAATCCACCAAACATAAAAAAAAAAGGTAATTGAATTAATATTTCTATATGATAGATGATAGTAGTCTATCACTGTGATAGACAGTAACATTTTGGTATATTTATAAATATATTGACTCATTTTACTATATTTGAAAACGACCCTAAAAAATAAGCAACAAAATGTAAATATAATATAAATAACAGACATGTTAAATTGTTTAAAAATCACAAAATGTTTATTTACTAATCTAAATTTATATTTTGGATTGTATTTTTGTTCATATAATTTTTTTTCCGAAAATATTCATCAACAATTGACATTTTATCGATATTTTCAATGACATTTCTGTTAAATTAAGAGCTTTATTTATTATTTCCATCGACATCTACATTTTAAACCTTGATTATAATTATAGTATTATATAGTATCTGATTTATTATTGATTCTTAATTATATTGATATGATTTATTGGAAAATGCAGGATTCAATTCACAAGAACATGAATACAAAATATGGGAGTGATTCAATGGGCTCAAGCAGTCAAAATTCTGAATCAAGTGAGACTCAAGAGCTAGATTTGGAGTTGAGATTGTCAATCTAATTAATAAAAAAAGTGGGGTTAATTACAAAATATATAATCAGTCAAATTTCCTATCATTATATAATTAATCCACAATTATAAACTTTCATTAATCAGTCAAATTACCTATTTTATTAATCATGCTCTCATGTTTTAGAAATGGGTTTCAAACATCTCTTTAGTTTGTACATTTTCAAATCATACCCTTTTGTCAACTTAAGTGTAATAGGGTTGATACATTTAGCACTTAAATTAGAGGCAATTTTGGATAAAAGGGTATTTTTTTTTTCGAGATGTTTGAGACTATTAAAAAAGAGAAATACAAGGGTGTGATTTGTAAAATGGGAAAATCATAGGGTGTGATTTGTAATTATTATTCCTATATATATATATATATAAATATTGCATGC

mRNA sequence

GGAAGTTCTCAAAACAAAAGGAGAGAAAGAAAAAAAAAAAGCATAAAATCTAAGTATAAATAACATAAAAATCCTAGAGAAAATCTGATCCAGCGATGCAATAATTGTTGAGACAGTGAAAAAAAAAAGGAGCTTAAAAAGAGGGGTTTGGAGATCTTTGGCTTCTCAGATTGCCGCCCAGCAACAAGCTAATTCCCACTTTCTCTCTCTAATTTCTTTTTTCTTTTTCTTTTTTTTTAAAAAATAAAAATTTCTTTTTTCTGAAGATCCTATGGGGAGTGGTTATTTTGGGGAGATGAATATGGGGAATAATAATATTGATAAGAGAAGAAGTGGGTCGCCGGCGACGGCGGCAGCGACGGGGAGGAGAGGGAGGAAAGGAGGCGGCGGAGAGAAACCGAAGCAGCCGCAGAGAGGGTTGGGAGTTGCTCAGTTGGAGAAGATCAGATTGCATGGAGAAATGGGTTGTGCTGCTTATGGCCACTTGTATCCAAATCTCTCCGCCGGAGATGATATGAGAATGCAAACAACAGCTTCTTTTTCCTACTCCTCAACTCAATCATCTTCTTCATCTCCTAATCCCTATGCTTTCCACCAAAACTTTTTGGGAATGGGAGAACATGAAAGAGGAAACTTTAGATATGGTGATTCTCAGCCCACAACAACTTCTTCTTTAAGATGGGACCCAAGTAATACATTCCTGGAGACCCAACATTTTGGGCAACCAAACATGACTGGACACCTTTTCAGTCCTCATGTACAGGATTCAATTCACAAGAACATGAATACAAAATATGGGAGTGATTCAATGGGCTCAAGCAGTCAAAATTCTGAATCAAGTGAGACTCAAGAGCTAGATTTGGAGTTGAGATTGTCAATCTAATTAATAAAAAAAGTGGGGTTAATTACAAAATATATAATCAGTCAAATTTCCTATCATTATATAATTAATCCACAATTATAAACTTTCATTAATCAGTCAAATTACCTATTTTATTAATCATGCTCTCATGTTTTAGAAATGGGTTTCAAACATCTCTTTAGTTTGTACATTTTCAAATCATACCCTTTTGTCAACTTAAGTGTAATAGGGTTGATACATTTAGCACTTAAATTAGAGGCAATTTTGGATAAAAGGGTATTTTTTTTTTCGAGATGTTTGAGACTATTAAAAAAGAGAAATACAAGGGTGTGATTTGTAAAATGGGAAAATCATAGGGTGTGATTTGTAATTATTATTCCTATATATATATATATATAAATATTGCATGC

Coding sequence (CDS)

ATGGGGAGTGGTTATTTTGGGGAGATGAATATGGGGAATAATAATATTGATAAGAGAAGAAGTGGGTCGCCGGCGACGGCGGCAGCGACGGGGAGGAGAGGGAGGAAAGGAGGCGGCGGAGAGAAACCGAAGCAGCCGCAGAGAGGGTTGGGAGTTGCTCAGTTGGAGAAGATCAGATTGCATGGAGAAATGGGTTGTGCTGCTTATGGCCACTTGTATCCAAATCTCTCCGCCGGAGATGATATGAGAATGCAAACAACAGCTTCTTTTTCCTACTCCTCAACTCAATCATCTTCTTCATCTCCTAATCCCTATGCTTTCCACCAAAACTTTTTGGGAATGGGAGAACATGAAAGAGGAAACTTTAGATATGGTGATTCTCAGCCCACAACAACTTCTTCTTTAAGATGGGACCCAAGTAATACATTCCTGGAGACCCAACATTTTGGGCAACCAAACATGACTGGACACCTTTTCAGTCCTCATGTACAGGATTCAATTCACAAGAACATGAATACAAAATATGGGAGTGATTCAATGGGCTCAAGCAGTCAAAATTCTGAATCAAGTGAGACTCAAGAGCTAGATTTGGAGTTGAGATTGTCAATCTAA

Protein sequence

MGSGYFGEMNMGNNNIDKRRSGSPATAAATGRRGRKGGGGEKPKQPQRGLGVAQLEKIRLHGEMGCAAYGHLYPNLSAGDDMRMQTTASFSYSSTQSSSSSPNPYAFHQNFLGMGEHERGNFRYGDSQPTTTSSLRWDPSNTFLETQHFGQPNMTGHLFSPHVQDSIHKNMNTKYGSDSMGSSSQNSESSETQELDLELRLSI

Homology

[Close]

BLAST of Lsi11G002480 vs. ExPASy Swiss-Prot
Match: Q6IDB0 (Protein SPEAR3 OS=Arabidopsis thaliana OX=3702 GN=SPEAR3 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.0e-29
Identity = 93/216 (43.06%), Postives = 126/216 (58.33%), Query Frame = 0


Query: 1   MGSGYFGEMNMGNNNIDKRRSGSPATAAAT-GRRGRKGGGGEKPKQPQRGLGVAQLEKIR 60
           MGS +FG   MG ++     S SP +++++  +RG+   G +KPKQPQRGLGVAQLEKIR
Sbjct: 1   MGSSFFGRPKMGGSS-----SSSPTSSSSSPAKRGKNKNGSDKPKQPQRGLGVAQLEKIR 60

Query: 61  LHGEMGCAAYGHLYPNLSAG---DDMRMQ--------TTASFSYSSTQSSSSSPNPYAFH 120
           LHGE  C ++ + YP+       +D+R+Q        ++ SFSY+   SSS  P PY FH
Sbjct: 61  LHGEYNCNSF-NTYPSYHPSTYQEDVRIQGGYPSIPSSSPSFSYA---SSSPPPAPYGFH 120

Query: 121 QNFL---GMGEHERGNFRYGDSQPTTTSSLRWDPSNTFLETQHFGQPNMTGHLFSPHVQD 180
            N +      ++ER   RYGDSQP    S  W+PS   LE+QHF +PN T H        
Sbjct: 121 PNMMMNANNDQYERTTIRYGDSQPHRAPS--WNPSYGILESQHFVEPNTTRHF------- 180

Query: 181 SIHKNMNTKYGSDSMGSSSQNSESSETQELDLELRL 202
            +H++      + S+GS  QN E+SE  ELDLELRL
Sbjct: 181 -LHEDQR----NISLGSGIQNFETSEANELDLELRL 193

[Close]

BLAST of Lsi11G002480 vs. ExPASy Swiss-Prot
Match: Q84X40 (Protein SPEAR1 OS=Arabidopsis thaliana OX=3702 GN=SPEAR1 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-26
Identity = 90/203 (44.33%), Postives = 117/203 (57.64%), Query Frame = 0


Query: 1   MGSGYFGEMNMGNNNIDKRRSGSPATAAATGRRGRKGGGGEKPKQPQRGLGVAQLEKIRL 60
           MGS +FG  N+  ++       S +++ AT RRG+K  G EKPKQPQRGLGVAQLEKIRL
Sbjct: 1   MGSTFFGRPNVVGSSPPSSSPTSSSSSPAT-RRGKK-NGSEKPKQPQRGLGVAQLEKIRL 60

Query: 61  HGEMGCAAYGHLYPNLSAGDDMRMQTTASFSYSSTQSSSSSPNPYAFHQNFLGMGEHERG 120
           HGEM C ++    P+L   +D+RMQ      YSS  S SS+  PY F+ N + MG H   
Sbjct: 61  HGEMSCNSFNSYNPSLYPQEDVRMQG----GYSSIPSQSSA--PYGFYPNMM-MGVHR-- 120

Query: 121 NFRYGDSQPTTTSSLRWDPSNTFLETQHFGQPNMTGHLFSPHVQDSIHKNMNTKYGSDSM 180
                D     T S  W+PS   LE+QH  +PN+T H  +     +  +       S S+
Sbjct: 121 -----DQYDRATMS--WNPSYGILESQHSLEPNITRHFLNEDPSSTTRR-------SKSL 178

Query: 181 GSSSQNSESSETQELDLELRLSI 204
           GS  Q+S SSE QE+DLELRLS+
Sbjct: 181 GSGIQHSGSSENQEVDLELRLSL 178

[Close]

BLAST of Lsi11G002480 vs. ExPASy TrEMBL
Match: A0A1S3C7M3 (protein SPEAR1 OS=Cucumis melo OX=3656 GN=LOC103497912 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.4e-89
Identity = 181/206 (87.86%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MGSGYFGEMNMGNNNIDKRRSGSPATAAATGRRGRKGGGGEKPKQPQRGLGVAQLEKIRL 60
           MGSGYFGEM    NNI+KRRSGSP  AAA GRRGRKGGGGEKPKQPQRGLGVAQLEKIRL
Sbjct: 1   MGSGYFGEM----NNIEKRRSGSP--AAAGGRRGRKGGGGEKPKQPQRGLGVAQLEKIRL 60

Query: 61  HGEMGCAAYGHLYPNLSAGDDMRMQTT--ASFSYSSTQSSSSSPNPYAFHQNFLGMGEHE 120
           HGEMGCAAY H YPNLSAGDDMRMQTT  ++FSYSSTQSSSSSPN Y FHQNF+GMGE+E
Sbjct: 61  HGEMGCAAYSHFYPNLSAGDDMRMQTTTPSNFSYSSTQSSSSSPNSYGFHQNFMGMGEYE 120

Query: 121 RGNFRYGDSQPTTTSSLRWDPSNTFLETQHFGQPNMTGHLFSPHVQDS-IHKNMNTKYGS 180
           RG+FRYGDSQ TTTSSLRWDPSNTFLETQHFGQPNM+GHLF+ HVQDS IH NMNTKYGS
Sbjct: 121 RGSFRYGDSQLTTTSSLRWDPSNTFLETQHFGQPNMSGHLFNSHVQDSIIHNNMNTKYGS 180

Query: 181 DSMGSSSQNSESSETQELDLELRLSI 204
           DSMGSSSQNSESSETQELDLELRLSI
Sbjct: 181 DSMGSSSQNSESSETQELDLELRLSI 200

[Close]

BLAST of Lsi11G002480 vs. ExPASy TrEMBL
Match: A0A0A0LFV0 (SPOROCYTELESS-like EAR-containing protein 1 OS=Cucumis sativus OX=3659 GN=SPEAR1 PE=2 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.2e-87
Identity = 178/207 (85.99%), Postives = 189/207 (91.30%), Query Frame = 0


Query: 1   MGSGYFGEMNMGNNNIDKRRSGSPATAAATGRRGRKGGGGEKPKQPQRGLGVAQLEKIRL 60
           MGSGYFGEM    NNI+KRRSGSP  +AA GRRGRKGGGGEKPKQPQRGLGVAQLEKIRL
Sbjct: 1   MGSGYFGEM----NNIEKRRSGSP--SAAGGRRGRKGGGGEKPKQPQRGLGVAQLEKIRL 60

Query: 61  HGEMGCAAYGHLYPNLSAGDDMRMQTTA--SFSYSST-QSSSSSPNPYAFHQNFLGMGEH 120
           HGEMGCAAY H YPNLSAGDD RMQTT   +FSYSST +SS+SSPN Y FHQNF+GMGE+
Sbjct: 61  HGEMGCAAYSHFYPNLSAGDDRRMQTTTTPNFSYSSTHESSASSPNSYGFHQNFMGMGEY 120

Query: 121 ERGNFRYGDSQPTTTSSLRWDPSNTFLETQHFGQPNMTGHLFSPHVQDS-IHKNMNTKYG 180
           ERG+FRYGDSQ TTTSSLRWDPSNTFLETQHFGQPNM+GHLF+PHVQDS IHKN+NTKYG
Sbjct: 121 ERGSFRYGDSQLTTTSSLRWDPSNTFLETQHFGQPNMSGHLFNPHVQDSMIHKNINTKYG 180

Query: 181 SDSMGSSSQNSESSETQELDLELRLSI 204
           SDSMGSSSQNSESSETQELDLELRLSI
Sbjct: 181 SDSMGSSSQNSESSETQELDLELRLSI 201

[Close]

BLAST of Lsi11G002480 vs. ExPASy TrEMBL
Match: A0A6J1KB48 (protein SPEAR3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493868 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 7.0e-73
Identity = 158/203 (77.83%), Postives = 167/203 (82.27%), Query Frame = 0


Query: 1   MGSGYFGEMNMGNNNIDKRRSGSPATAAATGRRGRKGGGGEKPKQPQRGLGVAQLEKIRL 60
           MGSGYFGEMNMGNNNIDKRRSGS    AA  RRGRKGGGGEKPKQPQRGLGVAQLEKIRL
Sbjct: 1   MGSGYFGEMNMGNNNIDKRRSGS----AAVVRRGRKGGGGEKPKQPQRGLGVAQLEKIRL 60

Query: 61  HGEMGCAAYGHLYPNLSAGDDMRMQTTASFSYSSTQSSSSSPNPYAFHQNFLGMGEHERG 120
           HGEMGCAAYGH YP LSA DDMR++T          +SSSSP+ Y FHQNF+GMGEHERG
Sbjct: 61  HGEMGCAAYGHPYPYLSASDDMRIET----------ASSSSPS-YGFHQNFMGMGEHERG 120

Query: 121 NFRYGDSQPTTTSSLRWDPSNTFLETQHFGQPNMTGHLFSPHVQDSIHKNMNTKYGSDSM 180
           + R GDSQPTT  SLRWDPS+TFLET HFGQPNMTGHLF+ HVQDSI  N+N KYGSDSM
Sbjct: 121 SLRCGDSQPTT--SLRWDPSHTFLETHHFGQPNMTGHLFNTHVQDSIQGNINVKYGSDSM 180

Query: 181 GSSSQNSESSETQELDLELRLSI 204
             S QNSESS   ELDLELRLSI
Sbjct: 181 RLSRQNSESS---ELDLELRLSI 183

[Close]

BLAST of Lsi11G002480 vs. ExPASy TrEMBL
Match: A0A6J1G472 (protein SPEAR1-like OS=Cucurbita moschata OX=3662 GN=LOC111450631 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.7e-69
Identity = 154/206 (74.76%), Postives = 164/206 (79.61%), Query Frame = 0


Query: 1   MGSGYFGEMNMGNNNIDKRRSGSPATAAATG---RRGRKGGGGEKPKQPQRGLGVAQLEK 60
           MGSGYFGEMNMGNN IDKRRSGSP+ AAA     RRGRKGGGGEKPKQPQRGLGVAQLEK
Sbjct: 1   MGSGYFGEMNMGNNYIDKRRSGSPSAAAAVATVVRRGRKGGGGEKPKQPQRGLGVAQLEK 60

Query: 61  IRLHGEMGCAAYGHLYPNLSAGDDMRMQTTASFSYSSTQSSSSSPNPYAFHQNFLGMGEH 120
           IRLHGEMGCAAYGH YPNLSA DDMR++T          +SSSSP+ Y F QNF+G    
Sbjct: 61  IRLHGEMGCAAYGHPYPNLSASDDMRIET----------ASSSSPS-YGFRQNFMG---- 120

Query: 121 ERGNFRYGDSQPTTTSSLRWDPSNTFLETQHFGQPNMTGHLFSPHVQDSIHKNMNTKYGS 180
                 YGDSQPTT  SLRWDP++TFLETQHFGQPNMTGHLF+ HVQDSIH N+N KYG 
Sbjct: 121 ------YGDSQPTT--SLRWDPTHTFLETQHFGQPNMTGHLFNTHVQDSIHGNINVKYGG 180

Query: 181 DSMGSSSQNSESSETQELDLELRLSI 204
           DSM SSSQNSESS   ELDLELRLSI
Sbjct: 181 DSMRSSSQNSESS---ELDLELRLSI 180

[Close]

BLAST of Lsi11G002480 vs. ExPASy TrEMBL
Match: A0A6J1HQB1 (protein SPEAR1-like OS=Cucurbita maxima OX=3661 GN=LOC111465705 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 5.7e-67
Identity = 147/203 (72.41%), Postives = 156/203 (76.85%), Query Frame = 0


Query: 1   MGSGYFGEMNMGNNNIDKRRSGSPATAAATGRRGRKGGGGEKPKQPQRGLGVAQLEKIRL 60
           MGSGYFGEMNMG  NIDKRRSGSPA AAA GRRGRKGGGGEKPKQPQRGLGVAQLEKIRL
Sbjct: 1   MGSGYFGEMNMG--NIDKRRSGSPA-AAAAGRRGRKGGGGEKPKQPQRGLGVAQLEKIRL 60

Query: 61  HGEMGCAAYGHLYPNLSAGDDMRMQTTASFSYSSTQSSSSSPNPYAFHQNFLGMGEHERG 120
           HGEMGCA YGH YPNLSA                                  GMGE+ERG
Sbjct: 61  HGEMGCAGYGHFYPNLSA----------------------------------GMGEYERG 120

Query: 121 NFRYGDSQPTTTSSLRWDPSNTFLETQHFGQPNMTGHLFSPHVQDSIHKNMNTKYGSDSM 180
           +FRYGDSQPTTT S+RW+ SNT +ETQHFG+PNMTGHL +P V DS+HKNMNTKYGSDS+
Sbjct: 121 SFRYGDSQPTTT-SIRWNMSNTSMETQHFGEPNMTGHLSNPRVLDSMHKNMNTKYGSDSI 165

Query: 181 GSSSQNSESSETQELDLELRLSI 204
           GSSSQNSESSET ELDLELRLSI
Sbjct: 181 GSSSQNSESSETHELDLELRLSI 165

[Close]

BLAST of Lsi11G002480 vs. NCBI nr
Match: XP_038889470.1 (protein SPEAR1-like [Benincasa hispida])

HSP 1 Score: 357.5 bits (916), Expect = 7.9e-95
Identity = 189/207 (91.30%), Postives = 196/207 (94.69%), Query Frame = 0


Query: 1   MGSGYFGEMNMG-NNNIDKRRSGSPAT--AAATGRRGRKGGGGEKPKQPQRGLGVAQLEK 60
           MGSGYFGEMNMG NNNI+KRRSGSPAT  AA TGRRGRKG GGEKPKQPQRGLGVAQLEK
Sbjct: 1   MGSGYFGEMNMGNNNNIEKRRSGSPATGAAAGTGRRGRKGSGGEKPKQPQRGLGVAQLEK 60

Query: 61  IRLHGEMGCAAY-GHLYPNLSAGDDMRMQTTASFSYSSTQSSSSSPNPYAFHQNFLGMGE 120
           IRLHGEMGCAAY GH YPNLSAGDDMRMQTTASFSYSSTQSSSSSPN YAFHQNF+G+GE
Sbjct: 61  IRLHGEMGCAAYSGHFYPNLSAGDDMRMQTTASFSYSSTQSSSSSPNFYAFHQNFMGIGE 120

Query: 121 HERGNFRYGDSQPTTTSSLRWDPSNTFLETQHFGQPNMTGHLFSPHVQDSIHKNMNTKYG 180
           +ERG+ RYGDSQP TTSS RWDPSNTFLETQHFGQPNMTGHLF+PHVQDSIHKNMNTKYG
Sbjct: 121 YERGSLRYGDSQP-TTSSFRWDPSNTFLETQHFGQPNMTGHLFNPHVQDSIHKNMNTKYG 180

Query: 181 SDSMGSSSQNSESSETQELDLELRLSI 204
           SDSMGSSSQNSESSET+ELDLELRLSI
Sbjct: 181 SDSMGSSSQNSESSETRELDLELRLSI 206

[Close]

BLAST of Lsi11G002480 vs. NCBI nr
Match: XP_008458547.1 (PREDICTED: protein SPEAR1 [Cucumis melo])

HSP 1 Score: 339.0 bits (868), Expect = 2.9e-89
Identity = 181/206 (87.86%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MGSGYFGEMNMGNNNIDKRRSGSPATAAATGRRGRKGGGGEKPKQPQRGLGVAQLEKIRL 60
           MGSGYFGEM    NNI+KRRSGSP  AAA GRRGRKGGGGEKPKQPQRGLGVAQLEKIRL
Sbjct: 1   MGSGYFGEM----NNIEKRRSGSP--AAAGGRRGRKGGGGEKPKQPQRGLGVAQLEKIRL 60

Query: 61  HGEMGCAAYGHLYPNLSAGDDMRMQTT--ASFSYSSTQSSSSSPNPYAFHQNFLGMGEHE 120
           HGEMGCAAY H YPNLSAGDDMRMQTT  ++FSYSSTQSSSSSPN Y FHQNF+GMGE+E
Sbjct: 61  HGEMGCAAYSHFYPNLSAGDDMRMQTTTPSNFSYSSTQSSSSSPNSYGFHQNFMGMGEYE 120

Query: 121 RGNFRYGDSQPTTTSSLRWDPSNTFLETQHFGQPNMTGHLFSPHVQDS-IHKNMNTKYGS 180
           RG+FRYGDSQ TTTSSLRWDPSNTFLETQHFGQPNM+GHLF+ HVQDS IH NMNTKYGS
Sbjct: 121 RGSFRYGDSQLTTTSSLRWDPSNTFLETQHFGQPNMSGHLFNSHVQDSIIHNNMNTKYGS 180

Query: 181 DSMGSSSQNSESSETQELDLELRLSI 204
           DSMGSSSQNSESSETQELDLELRLSI
Sbjct: 181 DSMGSSSQNSESSETQELDLELRLSI 200

[Close]

BLAST of Lsi11G002480 vs. NCBI nr
Match: XP_011648648.1 (protein SPEAR1 [Cucumis sativus] >KGN60603.1 hypothetical protein Csa_019375 [Cucumis sativus] >QBL95714.1 SPOROCYTELESS-like EAR-containing protein 1 [Cucumis sativus])

HSP 1 Score: 331.6 bits (849), Expect = 4.6e-87
Identity = 178/207 (85.99%), Postives = 189/207 (91.30%), Query Frame = 0


Query: 1   MGSGYFGEMNMGNNNIDKRRSGSPATAAATGRRGRKGGGGEKPKQPQRGLGVAQLEKIRL 60
           MGSGYFGEM    NNI+KRRSGSP  +AA GRRGRKGGGGEKPKQPQRGLGVAQLEKIRL
Sbjct: 1   MGSGYFGEM----NNIEKRRSGSP--SAAGGRRGRKGGGGEKPKQPQRGLGVAQLEKIRL 60

Query: 61  HGEMGCAAYGHLYPNLSAGDDMRMQTTA--SFSYSST-QSSSSSPNPYAFHQNFLGMGEH 120
           HGEMGCAAY H YPNLSAGDD RMQTT   +FSYSST +SS+SSPN Y FHQNF+GMGE+
Sbjct: 61  HGEMGCAAYSHFYPNLSAGDDRRMQTTTTPNFSYSSTHESSASSPNSYGFHQNFMGMGEY 120

Query: 121 ERGNFRYGDSQPTTTSSLRWDPSNTFLETQHFGQPNMTGHLFSPHVQDS-IHKNMNTKYG 180
           ERG+FRYGDSQ TTTSSLRWDPSNTFLETQHFGQPNM+GHLF+PHVQDS IHKN+NTKYG
Sbjct: 121 ERGSFRYGDSQLTTTSSLRWDPSNTFLETQHFGQPNMSGHLFNPHVQDSMIHKNINTKYG 180

Query: 181 SDSMGSSSQNSESSETQELDLELRLSI 204
           SDSMGSSSQNSESSETQELDLELRLSI
Sbjct: 181 SDSMGSSSQNSESSETQELDLELRLSI 201

[Close]

BLAST of Lsi11G002480 vs. NCBI nr
Match: XP_023522169.1 (protein SPEAR1-like [Cucurbita pepo subsp. pepo] >XP_023547325.1 protein SPEAR1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298.9 bits (764), Expect = 3.3e-77
Identity = 164/207 (79.23%), Postives = 177/207 (85.51%), Query Frame = 0


Query: 1   MGSGYFGEMNMGNNNIDKRRSGSPATAAATG---RRGRK-GGGGEKPKQPQRGLGVAQLE 60
           MGSGYFGEMNMGNNNIDKRRSGSP++AAA     RRGRK GGGGEKPKQPQRGLGVAQLE
Sbjct: 1   MGSGYFGEMNMGNNNIDKRRSGSPSSAAAVATVVRRGRKGGGGGEKPKQPQRGLGVAQLE 60

Query: 61  KIRLHGEMGCAAYGHLYPNLSAGDDMRMQTTASFSYSSTQSSSSSPNPYAFHQNFLGMGE 120
           KIRLHGEMGCAAYGHLYPNLSA DDMR++T          +SSSSP+ Y FHQNF+GMGE
Sbjct: 61  KIRLHGEMGCAAYGHLYPNLSASDDMRIET----------ASSSSPS-YGFHQNFMGMGE 120

Query: 121 HERGNFRYGDSQPTTTSSLRWDPSNTFLETQHFGQPNMTGHLFSPHVQDSIHKNMNTKYG 180
           HERG+F YGDSQP T  SLRWDP++TFLETQHFGQPNMTGHLF+ H+QDSIH N+N KYG
Sbjct: 121 HERGSFGYGDSQPIT--SLRWDPTHTFLETQHFGQPNMTGHLFNTHLQDSIHGNINVKYG 180

Query: 181 SDSMGSSSQNSESSETQELDLELRLSI 204
           SDSM SSSQNSESS   ELDLELRLSI
Sbjct: 181 SDSMTSSSQNSESS---ELDLELRLSI 191

[Close]

BLAST of Lsi11G002480 vs. NCBI nr
Match: XP_022999537.1 (protein SPEAR3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-72
Identity = 158/203 (77.83%), Postives = 167/203 (82.27%), Query Frame = 0


Query: 1   MGSGYFGEMNMGNNNIDKRRSGSPATAAATGRRGRKGGGGEKPKQPQRGLGVAQLEKIRL 60
           MGSGYFGEMNMGNNNIDKRRSGS    AA  RRGRKGGGGEKPKQPQRGLGVAQLEKIRL
Sbjct: 1   MGSGYFGEMNMGNNNIDKRRSGS----AAVVRRGRKGGGGEKPKQPQRGLGVAQLEKIRL 60

Query: 61  HGEMGCAAYGHLYPNLSAGDDMRMQTTASFSYSSTQSSSSSPNPYAFHQNFLGMGEHERG 120
           HGEMGCAAYGH YP LSA DDMR++T          +SSSSP+ Y FHQNF+GMGEHERG
Sbjct: 61  HGEMGCAAYGHPYPYLSASDDMRIET----------ASSSSPS-YGFHQNFMGMGEHERG 120

Query: 121 NFRYGDSQPTTTSSLRWDPSNTFLETQHFGQPNMTGHLFSPHVQDSIHKNMNTKYGSDSM 180
           + R GDSQPTT  SLRWDPS+TFLET HFGQPNMTGHLF+ HVQDSI  N+N KYGSDSM
Sbjct: 121 SLRCGDSQPTT--SLRWDPSHTFLETHHFGQPNMTGHLFNTHVQDSIQGNINVKYGSDSM 180

Query: 181 GSSSQNSESSETQELDLELRLSI 204
             S QNSESS   ELDLELRLSI
Sbjct: 181 RLSRQNSESS---ELDLELRLSI 183

[Close]

BLAST of Lsi11G002480 vs. TAIR 10
Match: AT4G28840.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20080.1); Has 71 Blast hits to 69 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 129.0 bits (323), Expect = 4.2e-30
Identity = 93/216 (43.06%), Postives = 126/216 (58.33%), Query Frame = 0


Query: 1   MGSGYFGEMNMGNNNIDKRRSGSPATAAAT-GRRGRKGGGGEKPKQPQRGLGVAQLEKIR 60
           MGS +FG   MG ++     S SP +++++  +RG+   G +KPKQPQRGLGVAQLEKIR
Sbjct: 1   MGSSFFGRPKMGGSS-----SSSPTSSSSSPAKRGKNKNGSDKPKQPQRGLGVAQLEKIR 60

Query: 61  LHGEMGCAAYGHLYPNLSAG---DDMRMQ--------TTASFSYSSTQSSSSSPNPYAFH 120
           LHGE  C ++ + YP+       +D+R+Q        ++ SFSY+   SSS  P PY FH
Sbjct: 61  LHGEYNCNSF-NTYPSYHPSTYQEDVRIQGGYPSIPSSSPSFSYA---SSSPPPAPYGFH 120

Query: 121 QNFL---GMGEHERGNFRYGDSQPTTTSSLRWDPSNTFLETQHFGQPNMTGHLFSPHVQD 180
            N +      ++ER   RYGDSQP    S  W+PS   LE+QHF +PN T H        
Sbjct: 121 PNMMMNANNDQYERTTIRYGDSQPHRAPS--WNPSYGILESQHFVEPNTTRHF------- 180

Query: 181 SIHKNMNTKYGSDSMGSSSQNSESSETQELDLELRL 202
            +H++      + S+GS  QN E+SE  ELDLELRL
Sbjct: 181 -LHEDQR----NISLGSGIQNFETSEANELDLELRL 193

[Close]

BLAST of Lsi11G002480 vs. TAIR 10
Match: AT2G20080.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28840.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-27
Identity = 90/203 (44.33%), Postives = 117/203 (57.64%), Query Frame = 0


Query: 1   MGSGYFGEMNMGNNNIDKRRSGSPATAAATGRRGRKGGGGEKPKQPQRGLGVAQLEKIRL 60
           MGS +FG  N+  ++       S +++ AT RRG+K  G EKPKQPQRGLGVAQLEKIRL
Sbjct: 1   MGSTFFGRPNVVGSSPPSSSPTSSSSSPAT-RRGKK-NGSEKPKQPQRGLGVAQLEKIRL 60

Query: 61  HGEMGCAAYGHLYPNLSAGDDMRMQTTASFSYSSTQSSSSSPNPYAFHQNFLGMGEHERG 120
           HGEM C ++    P+L   +D+RMQ      YSS  S SS+  PY F+ N + MG H   
Sbjct: 61  HGEMSCNSFNSYNPSLYPQEDVRMQG----GYSSIPSQSSA--PYGFYPNMM-MGVHR-- 120

Query: 121 NFRYGDSQPTTTSSLRWDPSNTFLETQHFGQPNMTGHLFSPHVQDSIHKNMNTKYGSDSM 180
                D     T S  W+PS   LE+QH  +PN+T H  +     +  +       S S+
Sbjct: 121 -----DQYDRATMS--WNPSYGILESQHSLEPNITRHFLNEDPSSTTRR-------SKSL 178

Query: 181 GSSSQNSESSETQELDLELRLSI 204
           GS  Q+S SSE QE+DLELRLS+
Sbjct: 181 GSGIQHSGSSENQEVDLELRLSL 178

[Close]

BLAST of Lsi11G002480 vs. TAIR 10
Match: AT2G20080.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28840.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 92.4 bits (228), Expect = 4.4e-19
Identity = 74/203 (36.45%), Postives = 103/203 (50.74%), Query Frame = 0


Query: 1   MGSGYFGEMNMGNNNIDKRRSGSPATAAATGRRGRKGGGGEKPKQPQRGLGVAQLEKIRL 60
           MGS +FG  N+  ++       S +++ AT RRG+K  G EKPKQPQRGLGVAQLEKIRL
Sbjct: 1   MGSTFFGRPNVVGSSPPSSSPTSSSSSPAT-RRGKK-NGSEKPKQPQRGLGVAQLEKIRL 60

Query: 61  HGEMGCAAYGHLYPNLSAGDDMRMQTTASFSYSSTQSSSSSPNPYAFHQNFLGMGEHERG 120
           HGEM C                              +S +S NP  + Q  +   +++R 
Sbjct: 61  HGEMSC------------------------------NSFNSYNPSLYPQMGVHRDQYDR- 120

Query: 121 NFRYGDSQPTTTSSLRWDPSNTFLETQHFGQPNMTGHLFSPHVQDSIHKNMNTKYGSDSM 180
                       +++ W+PS   LE+QH  +PN+T H  +     +  +       S S+
Sbjct: 121 ------------ATMSWNPSYGILESQHSLEPNITRHFLNEDPSSTTRR-------SKSL 151

Query: 181 GSSSQNSESSETQELDLELRLSI 204
           GS  Q+S SSE QE+DLELRLS+
Sbjct: 181 GSGIQHSGSSENQEVDLELRLSL 151

The following BLAST results are available for this feature:

BLAST of Lsi11G002480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6IDB0	6.0e-29	43.06	Protein SPEAR3 OS=Arabidopsis thaliana OX=3702 GN=SPEAR3 PE=1 SV=1	[more]
Q84X40	1.6e-26	44.33	Protein SPEAR1 OS=Arabidopsis thaliana OX=3702 GN=SPEAR1 PE=1 SV=1	[more]

BLAST of Lsi11G002480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C7M3	1.4e-89	87.86	protein SPEAR1 OS=Cucumis melo OX=3656 GN=LOC103497912 PE=4 SV=1	[more]
A0A0A0LFV0	2.2e-87	85.99	SPOROCYTELESS-like EAR-containing protein 1 OS=Cucumis sativus OX=3659 GN=SPEAR1...	[more]
A0A6J1KB48	7.0e-73	77.83	protein SPEAR3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493868 PE=4 ...	[more]
A0A6J1G472	2.7e-69	74.76	protein SPEAR1-like OS=Cucurbita moschata OX=3662 GN=LOC111450631 PE=4 SV=1	[more]
A0A6J1HQB1	5.7e-67	72.41	protein SPEAR1-like OS=Cucurbita maxima OX=3661 GN=LOC111465705 PE=4 SV=1	[more]

BLAST of Lsi11G002480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889470.1	7.9e-95	91.30	protein SPEAR1-like [Benincasa hispida]	[more]
XP_008458547.1	2.9e-89	87.86	PREDICTED: protein SPEAR1 [Cucumis melo]	[more]
XP_011648648.1	4.6e-87	85.99	protein SPEAR1 [Cucumis sativus] >KGN60603.1 hypothetical protein Csa_019375 [Cu...	[more]
XP_023522169.1	3.3e-77	79.23	protein SPEAR1-like [Cucurbita pepo subsp. pepo] >XP_023547325.1 protein SPEAR1-...	[more]
XP_022999537.1	1.4e-72	77.83	protein SPEAR3-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Lsi11G002480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28840.1	4.2e-30	43.06	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G20080.1	1.2e-27	44.33	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G20080.2	4.4e-19	36.45	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..192
None	No IPR available	PANTHER	PTHR33388:SF18	PROTEIN SPEAR1	coord: 1..203
IPR040356	SPEAR family	PANTHER	PTHR33388	OS01G0212500 PROTEIN	coord: 1..203

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G002480.1	Lsi11G002480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity