Lsi11G002010 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G002010
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	60S ribosomal protein L31
Location	chr11: 2052917 .. 2054596 (+)
RNA-Seq Expression	Lsi11G002010
Synteny	Lsi11G002010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAGTTATATTGGTTGGCTTACTGGGTACAGGTGTTTCTGAAGAGATTCAAAAATGGTGGAGAAGACCAAAGGGAGAAAGGAGGAGGTAGTTAGCAGAGAGTATACTATTAACCTTCACAAACGCCTGCATGGCTGGTATGTTCATTTTATCTTCCTCTCGTATGTGTTTTTTCCTTTTAATGCTCGGTATGTTTATTCTAGCTGATTTCACAAATCTACTTTATGTGGGAGGAGTGACTTCAGGACGTTTTTGTACTTTATTTGGAAGTGCGTGCCATGAATTTACTGTTGCTTCCTTTGTCCTAGAACTATGGAGATTGTATTAGATTGGTTTTACCCTTCAGTTTAGCTCTTTCAGTTTAGTTCTTTCAATCTTTGTGGTTTGAGGTTTGGGATTTGTTGTTAATTGTTAAGTTGTAGTTGTTGTTAGGTGACCATGCTTAATTAACTGAGTGTTGCAGTTTAGTTGCTGGCTGAGGAAAAACTCAAAATTACTTTTGTGTACAAATGGCCAGAATAATCATATTTCCACAATACACGAGCAAGTTTCCTTGTATCATCTGCATATGAGATGAATTAGAGCCTTTGGAAGGAACCACCCATGATTATTTATCCCCTTTTTTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGGGGGGGGGGGGGGGGGGGAGGAGGTTAGAAGTTTTAACTGGTATTTACATGCTTTGTGTTTGTAGTTTCTCCCCGTGCCCGTGATGTGCAATTCATTTGACTGTTTTAGTTTATTGCCATATATGGGCTGGGGGCACTGATACAGATAGAGTGCAGAGTTCTTTTTTGTTCACATGTCTATTTATCTCTGTCTTAGACTATGATAGACAGTGTATTGTAATAACCTCCCCGTCTCTATCATCAGGATTGTTTTGTTTCTGGAAATAATGTGTAACCACAGTATAGTTTTGTTTCTTACTCATTAGCTTGTAACGTTTGTGAATGAACAGCACCTTTAAGAAGAAGGCTCCCAAGGCCATTAAAGAAATCAGGAAGTTTGCTGAGAAGGCCATGGGCACAAAGGATGTGAGAGTGGATGTGAAGTTGAACAAGCACATATGGAGCAGGGGAATCAGGAGTGTGCCCAGAAGAATCAGAGTTCGCATTGCTCGCAAGAGAAATGATGATGAAGATGCCAAGGAAGAGTTGTACTCCCTCGTAACAGTTGCAGAAATCCCGGCAGAAGGACTGAAGGGACTTGGGACTAAAGTCATTGAGGAAGATGATTGA

mRNA sequence

ATGGTGGAAGATTCAAAAATGGTGGAGAAGACCAAAGGGAGAAAGGAGGAGGTAGTTAGCAGAGAGTATACTATTAACCTTCACAAACGCCTGCATGGCTGGTATGTTCATTTTATCTTCCTCTCCACCTTTAAGAAGAAGGCTCCCAAGGCCATTAAAGAAATCAGGAAGTTTGCTGAGAAGGCCATGGGCACAAAGGATGTGAGAGTGGATGTGAAGTTGAACAAGCACATATGGAGCAGGGGAATCAGGAGTGTGCCCAGAAGAATCAGAGTTCGCATTGCTCGCAAGAGAAATGATGATGAAGATGCCAAGGAAGAGTTGTACTCCCTCGTAACAGTTGCAGAAATCCCGGCAGAAGGACTGAAGGGACTTGGGACTAAAGTCATTGAGGAAGATGATTGA

Coding sequence (CDS)

ATGGTGGAAGATTCAAAAATGGTGGAGAAGACCAAAGGGAGAAAGGAGGAGGTAGTTAGCAGAGAGTATACTATTAACCTTCACAAACGCCTGCATGGCTGGTATGTTCATTTTATCTTCCTCTCCACCTTTAAGAAGAAGGCTCCCAAGGCCATTAAAGAAATCAGGAAGTTTGCTGAGAAGGCCATGGGCACAAAGGATGTGAGAGTGGATGTGAAGTTGAACAAGCACATATGGAGCAGGGGAATCAGGAGTGTGCCCAGAAGAATCAGAGTTCGCATTGCTCGCAAGAGAAATGATGATGAAGATGCCAAGGAAGAGTTGTACTCCCTCGTAACAGTTGCAGAAATCCCGGCAGAAGGACTGAAGGGACTTGGGACTAAAGTCATTGAGGAAGATGATTGA

Protein sequence

MVEDSKMVEKTKGRKEEVVSREYTINLHKRLHGWYVHFIFLSTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVIEEDD

Homology

[Close]

BLAST of Lsi11G002010 vs. ExPASy Swiss-Prot
Match: P46290 (60S ribosomal protein L31 OS=Nicotiana glutinosa OX=35889 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 4.3e-52
Identity = 107/128 (83.59%), Postives = 115/128 (89.84%), Query Frame = 0


Query: 7   MVEKTKGRKEEVVSREYTINLHKRLHGWYVHFIFLSTFKKKAPKAIKEIRKFAEKAMGTK 66
           M +KTKGRKEEVV+REYTINLHKRLH          TFKKKAP AIKEIRKFA+KAMGTK
Sbjct: 1   MSDKTKGRKEEVVTREYTINLHKRLHS--------CTFKKKAPTAIKEIRKFAQKAMGTK 60

Query: 67  DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLG 126
           DVRVDVKLNK IWSRGIRSVPRR+RVRIARKRNDDEDAKEELYSLVTVAEIPA+GLKGLG
Sbjct: 61  DVRVDVKLNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAEIPAKGLKGLG 120

Query: 127 TKVIEEDD 135
           TK+IE++D
Sbjct: 121 TKIIEDED 120

[Close]

BLAST of Lsi11G002010 vs. ExPASy Swiss-Prot
Match: Q9MAV7 (60S ribosomal protein L31 OS=Panax ginseng OX=4054 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 7.4e-52
Identity = 108/128 (84.38%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 7   MVEKTKGRKEEVVSREYTINLHKRLHGWYVHFIFLSTFKKKAPKAIKEIRKFAEKAMGTK 66
           MVEKTKGRKEEVV+REYTINLHKRLHG         TFKKKAP AIKEIRKFA+KAMGTK
Sbjct: 1   MVEKTKGRKEEVVTREYTINLHKRLHG--------CTFKKKAPNAIKEIRKFAQKAMGTK 60

Query: 67  DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLG 126
           DVRVDVKLNK IWSRGIRSVPRR+RVRIARKRNDDEDAKEELYSLVTVA+IPA  LKGLG
Sbjct: 61  DVRVDVKLNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAKIPAGTLKGLG 120

Query: 127 TKVIEEDD 135
            ++IEEDD
Sbjct: 121 PQIIEEDD 120

[Close]

BLAST of Lsi11G002010 vs. ExPASy Swiss-Prot
Match: Q9M573 (60S ribosomal protein L31 OS=Perilla frutescens OX=48386 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 5.3e-50
Identity = 105/124 (84.68%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 11  TKGRKEEVVSREYTINLHKRLHGWYVHFIFLSTFKKKAPKAIKEIRKFAEKAMGTKDVRV 70
           +K RKEEVVSREYTINLHKRLHG         TFKKKAPKAIKEIRKFA+KAMGT DVRV
Sbjct: 6   SKPRKEEVVSREYTINLHKRLHG--------CTFKKKAPKAIKEIRKFAQKAMGTTDVRV 65

Query: 71  DVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKVI 130
           DVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIP  GLKGLGT+VI
Sbjct: 66  DVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPEGGLKGLGTQVI 121

Query: 131 EEDD 135
           +E++
Sbjct: 126 DEEE 121

[Close]

BLAST of Lsi11G002010 vs. ExPASy Swiss-Prot
Match: P51420 (60S ribosomal protein L31-3 OS=Arabidopsis thaliana OX=3702 GN=RPL31C PE=3 SV=2)

HSP 1 Score: 193.7 bits (491), Expect = 1.3e-48
Identity = 101/127 (79.53%), Postives = 110/127 (86.61%), Query Frame = 0


Query: 8   VEKTKGRKEEVVSREYTINLHKRLHGWYVHFIFLSTFKKKAPKAIKEIRKFAEKAMGTKD 67
           + + KGRKEEV++REYTINLH+RLH          TFKKKAPKAIKEIRKFAEKAMGTKD
Sbjct: 1   MSEKKGRKEEVITREYTINLHRRLH--------KCTFKKKAPKAIKEIRKFAEKAMGTKD 60

Query: 68  VRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGT 127
           VRVDVKLNK IWS+GIR  PRRIRVR+ARKRNDDEDAKEE +SLVTVAEIPAEGL GLGT
Sbjct: 61  VRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGT 119

Query: 128 KVIEEDD 135
           KVIEE+D
Sbjct: 121 KVIEEED 119

[Close]

BLAST of Lsi11G002010 vs. ExPASy Swiss-Prot
Match: Q9STR1 (60S ribosomal protein L31-2 OS=Arabidopsis thaliana OX=3702 GN=RPL31B PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.2e-48
Identity = 100/127 (78.74%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 8   VEKTKGRKEEVVSREYTINLHKRLHGWYVHFIFLSTFKKKAPKAIKEIRKFAEKAMGTKD 67
           + + KGRKEEVV+REYTINLH+RLH          TFKKKAPKAIKEIRKFAEK MGTKD
Sbjct: 1   MSEKKGRKEEVVTREYTINLHRRLHS--------CTFKKKAPKAIKEIRKFAEKEMGTKD 60

Query: 68  VRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGT 127
           VRVDVKLNK IWS+GIR  PRRIRVR+ARKRNDDEDAKEE +SLVTVAEIPAEGL GLGT
Sbjct: 61  VRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGT 119

Query: 128 KVIEEDD 135
           K+IEE+D
Sbjct: 121 KIIEEED 119

[Close]

BLAST of Lsi11G002010 vs. ExPASy TrEMBL
Match: A0A7J6FLA9 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_001943 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.5e-55
Identity = 119/138 (86.23%), Postives = 122/138 (88.41%), Query Frame = 0


Query: 7   MVEKTKGRKEEVVSREYTINLHKRLHGWYVHFIFL----------STFKKKAPKAIKEIR 66
           MVEKTKGRKEEVVSREYTINLHKRLHGW+V   F+          STFKKKAP AIKEIR
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHGWWVSIAFVNYVCCCEKTDSTFKKKAPNAIKEIR 60

Query: 67  KFAEKAMGTKDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAE 126
           KFA+KAMGT DVRVDVKLNK IWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAE
Sbjct: 61  KFAQKAMGTNDVRVDVKLNKQIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAE 120

Query: 127 IPAEGLKGLGTKVIEEDD 135
           IPAEGLKGLGTKVIEEDD
Sbjct: 121 IPAEGLKGLGTKVIEEDD 138

[Close]

BLAST of Lsi11G002010 vs. ExPASy TrEMBL
Match: A0A5D3CKL3 (60S ribosomal protein L31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00820 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 4.3e-55
Identity = 119/128 (92.97%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 7   MVEKTKGRKEEVVSREYTINLHKRLHGWYVHFIFLSTFKKKAPKAIKEIRKFAEKAMGTK 66
           MVEKTKGRKEEVVSREYTINLHKRLHG         TFKKKAPKAIKEIRKFAEKAMGTK
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHG--------CTFKKKAPKAIKEIRKFAEKAMGTK 60

Query: 67  DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLG 126
           DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLG
Sbjct: 61  DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLG 120

Query: 127 TKVIEEDD 135
           TKVIEEDD
Sbjct: 121 TKVIEEDD 120

[Close]

BLAST of Lsi11G002010 vs. ExPASy TrEMBL
Match: A0A6J1KK05 (60S ribosomal protein L31 OS=Cucurbita maxima OX=3661 GN=LOC111493875 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 4.3e-55
Identity = 119/128 (92.97%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 7   MVEKTKGRKEEVVSREYTINLHKRLHGWYVHFIFLSTFKKKAPKAIKEIRKFAEKAMGTK 66
           MVEKTKGRKEEVVSREYTINLHKRLHG         TFKKKAPKAIKEIRKFAEKAMGTK
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHG--------CTFKKKAPKAIKEIRKFAEKAMGTK 60

Query: 67  DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLG 126
           DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLG
Sbjct: 61  DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLG 120

Query: 127 TKVIEEDD 135
           TKVIEEDD
Sbjct: 121 TKVIEEDD 120

[Close]

BLAST of Lsi11G002010 vs. ExPASy TrEMBL
Match: A0A6J1G2V4 (60S ribosomal protein L31 OS=Cucurbita moschata OX=3662 GN=LOC111450292 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 4.3e-55
Identity = 119/128 (92.97%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 7   MVEKTKGRKEEVVSREYTINLHKRLHGWYVHFIFLSTFKKKAPKAIKEIRKFAEKAMGTK 66
           MVEKTKGRKEEVVSREYTINLHKRLHG         TFKKKAPKAIKEIRKFAEKAMGTK
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHG--------CTFKKKAPKAIKEIRKFAEKAMGTK 60

Query: 67  DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLG 126
           DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLG
Sbjct: 61  DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLG 120

Query: 127 TKVIEEDD 135
           TKVIEEDD
Sbjct: 121 TKVIEEDD 120

[Close]

BLAST of Lsi11G002010 vs. ExPASy TrEMBL
Match: A0A1S3C9P7 (60S ribosomal protein L31 OS=Cucumis melo OX=3656 GN=LOC103498384 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 4.3e-55
Identity = 119/128 (92.97%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 7   MVEKTKGRKEEVVSREYTINLHKRLHGWYVHFIFLSTFKKKAPKAIKEIRKFAEKAMGTK 66
           MVEKTKGRKEEVVSREYTINLHKRLHG         TFKKKAPKAIKEIRKFAEKAMGTK
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHG--------CTFKKKAPKAIKEIRKFAEKAMGTK 60

Query: 67  DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLG 126
           DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLG
Sbjct: 61  DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLG 120

Query: 127 TKVIEEDD 135
           TKVIEEDD
Sbjct: 121 TKVIEEDD 120

[Close]

BLAST of Lsi11G002010 vs. NCBI nr
Match: KAF4371415.1 (hypothetical protein F8388_001943 [Cannabis sativa] >KAF4398587.1 hypothetical protein G4B88_013676 [Cannabis sativa])

HSP 1 Score: 224.6 bits (571), Expect = 5.3e-55
Identity = 119/138 (86.23%), Postives = 122/138 (88.41%), Query Frame = 0


Query: 7   MVEKTKGRKEEVVSREYTINLHKRLHGWYVHFIFL----------STFKKKAPKAIKEIR 66
           MVEKTKGRKEEVVSREYTINLHKRLHGW+V   F+          STFKKKAP AIKEIR
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHGWWVSIAFVNYVCCCEKTDSTFKKKAPNAIKEIR 60

Query: 67  KFAEKAMGTKDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAE 126
           KFA+KAMGT DVRVDVKLNK IWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAE
Sbjct: 61  KFAQKAMGTNDVRVDVKLNKQIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAE 120

Query: 127 IPAEGLKGLGTKVIEEDD 135
           IPAEGLKGLGTKVIEEDD
Sbjct: 121 IPAEGLKGLGTKVIEEDD 138

[Close]

BLAST of Lsi11G002010 vs. NCBI nr
Match: XP_008459190.1 (PREDICTED: 60S ribosomal protein L31 [Cucumis melo] >XP_022946109.1 60S ribosomal protein L31 [Cucurbita moschata] >XP_022999548.1 60S ribosomal protein L31 [Cucurbita maxima] >XP_038889415.1 60S ribosomal protein L31 [Benincasa hispida] >KAA0061504.1 60S ribosomal protein L31 [Cucumis melo var. makuwa] >KAG7030475.1 60S ribosomal protein L31 [Cucurbita argyrosperma subsp. argyrosperma] >TYK10769.1 60S ribosomal protein L31 [Cucumis melo var. makuwa])

HSP 1 Score: 223.8 bits (569), Expect = 9.0e-55
Identity = 119/128 (92.97%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 7   MVEKTKGRKEEVVSREYTINLHKRLHGWYVHFIFLSTFKKKAPKAIKEIRKFAEKAMGTK 66
           MVEKTKGRKEEVVSREYTINLHKRLHG         TFKKKAPKAIKEIRKFAEKAMGTK
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHG--------CTFKKKAPKAIKEIRKFAEKAMGTK 60

Query: 67  DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLG 126
           DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLG
Sbjct: 61  DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLG 120

Query: 127 TKVIEEDD 135
           TKVIEEDD
Sbjct: 121 TKVIEEDD 120

[Close]

BLAST of Lsi11G002010 vs. NCBI nr
Match: RVW38234.1 (60S ribosomal protein L31 [Vitis vinifera])

HSP 1 Score: 223.4 bits (568), Expect = 1.2e-54
Identity = 119/133 (89.47%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 7   MVEKTKGRKEEVVSREYTINLHKRLHG-----WYVHFIFLSTFKKKAPKAIKEIRKFAEK 66
           MVEKTKGRKEEVV+REYTINLHKRLHG      YV F+  STFKKKAPKAIKEIRKFA+K
Sbjct: 1   MVEKTKGRKEEVVTREYTINLHKRLHGCLYRDLYVVFLNNSTFKKKAPKAIKEIRKFAQK 60

Query: 67  AMGTKDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEG 126
           AMGTKDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEG
Sbjct: 61  AMGTKDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEG 120

Query: 127 LKGLGTKVIEEDD 135
           LKGL TK+IEEDD
Sbjct: 121 LKGLETKIIEEDD 133

[Close]

BLAST of Lsi11G002010 vs. NCBI nr
Match: XP_022154770.1 (60S ribosomal protein L31 [Momordica charantia])

HSP 1 Score: 221.5 bits (563), Expect = 4.4e-54
Identity = 117/128 (91.41%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 7   MVEKTKGRKEEVVSREYTINLHKRLHGWYVHFIFLSTFKKKAPKAIKEIRKFAEKAMGTK 66
           MVEKTKGRKEEVV+REYTINLHKRLHG         TFKKKAPKAIKEIRKFAEKAMGTK
Sbjct: 1   MVEKTKGRKEEVVTREYTINLHKRLHG--------CTFKKKAPKAIKEIRKFAEKAMGTK 60

Query: 67  DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLG 126
           DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTV+EIPAEGLKGLG
Sbjct: 61  DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVSEIPAEGLKGLG 120

Query: 127 TKVIEEDD 135
           TKVIEEDD
Sbjct: 121 TKVIEEDD 120

[Close]

BLAST of Lsi11G002010 vs. NCBI nr
Match: XP_008450816.1 (PREDICTED: 60S ribosomal protein L31 [Cucumis melo] >XP_022928007.1 60S ribosomal protein L31 [Cucurbita moschata] >XP_022928011.1 60S ribosomal protein L31 [Cucurbita moschata] >XP_022928015.1 60S ribosomal protein L31 [Cucurbita moschata] >XP_022960857.1 60S ribosomal protein L31 [Cucurbita moschata] >XP_023516766.1 60S ribosomal protein L31 [Cucurbita pepo subsp. pepo] >XP_023516767.1 60S ribosomal protein L31 [Cucurbita pepo subsp. pepo] >KAG6588019.1 60S ribosomal protein L31, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021916.1 60S ribosomal protein L31 [Cucurbita argyrosperma subsp. argyrosperma] >TYK10122.1 60S ribosomal protein L31 [Cucumis melo var. makuwa] >KAG7023639.1 60S ribosomal protein L31, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221.1 bits (562), Expect = 5.8e-54
Identity = 117/128 (91.41%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 7   MVEKTKGRKEEVVSREYTINLHKRLHGWYVHFIFLSTFKKKAPKAIKEIRKFAEKAMGTK 66
           MVEKTKGRKEEVVSREYTINLHKRLHG         TFKKKAPKAIKEIRKFAEKAMGTK
Sbjct: 1   MVEKTKGRKEEVVSREYTINLHKRLHG--------CTFKKKAPKAIKEIRKFAEKAMGTK 60

Query: 67  DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLG 126
           DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLG
Sbjct: 61  DVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLG 120

Query: 127 TKVIEEDD 135
           TKVI+E+D
Sbjct: 121 TKVIDEED 120

[Close]

BLAST of Lsi11G002010 vs. TAIR 10
Match: AT5G56710.1 (Ribosomal protein L31e family protein )

HSP 1 Score: 193.7 bits (491), Expect = 9.2e-50
Identity = 101/127 (79.53%), Postives = 110/127 (86.61%), Query Frame = 0


Query: 8   VEKTKGRKEEVVSREYTINLHKRLHGWYVHFIFLSTFKKKAPKAIKEIRKFAEKAMGTKD 67
           + + KGRKEEV++REYTINLH+RLH          TFKKKAPKAIKEIRKFAEKAMGTKD
Sbjct: 1   MSEKKGRKEEVITREYTINLHRRLH--------KCTFKKKAPKAIKEIRKFAEKAMGTKD 60

Query: 68  VRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGT 127
           VRVDVKLNK IWS+GIR  PRRIRVR+ARKRNDDEDAKEE +SLVTVAEIPAEGL GLGT
Sbjct: 61  VRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGT 119

Query: 128 KVIEEDD 135
           KVIEE+D
Sbjct: 121 KVIEEED 119

[Close]

BLAST of Lsi11G002010 vs. TAIR 10
Match: AT4G26230.1 (Ribosomal protein L31e family protein )

HSP 1 Score: 193.0 bits (489), Expect = 1.6e-49
Identity = 100/127 (78.74%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 8   VEKTKGRKEEVVSREYTINLHKRLHGWYVHFIFLSTFKKKAPKAIKEIRKFAEKAMGTKD 67
           + + KGRKEEVV+REYTINLH+RLH          TFKKKAPKAIKEIRKFAEK MGTKD
Sbjct: 1   MSEKKGRKEEVVTREYTINLHRRLHS--------CTFKKKAPKAIKEIRKFAEKEMGTKD 60

Query: 68  VRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGT 127
           VRVDVKLNK IWS+GIR  PRRIRVR+ARKRNDDEDAKEE +SLVTVAEIPAEGL GLGT
Sbjct: 61  VRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGT 119

Query: 128 KVIEEDD 135
           K+IEE+D
Sbjct: 121 KIIEEED 119

[Close]

BLAST of Lsi11G002010 vs. TAIR 10
Match: AT2G19740.1 (Ribosomal protein L31e family protein )

HSP 1 Score: 191.8 bits (486), Expect = 3.5e-49
Identity = 101/127 (79.53%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 8   VEKTKGRKEEVVSREYTINLHKRLHGWYVHFIFLSTFKKKAPKAIKEIRKFAEKAMGTKD 67
           +EK KGRKEEVV+REYTINLH+RLH          TFKKKAP AIKEIRKFA KAMGTKD
Sbjct: 1   MEKGKGRKEEVVTREYTINLHRRLHS--------CTFKKKAPNAIKEIRKFALKAMGTKD 60

Query: 68  VRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGT 127
           VRVDVKLNK IWS+GIR  PRRIRVR+ARKRNDDEDAKEE +SLVTVAEIPAEGL GLGT
Sbjct: 61  VRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGT 119

Query: 128 KVIEEDD 135
           KVIEE++
Sbjct: 121 KVIEEEE 119

[Close]

BLAST of Lsi11G002010 vs. TAIR 10
Match: AT5G56710.2 (Ribosomal protein L31e family protein )

HSP 1 Score: 119.4 bits (298), Expect = 2.2e-27
Identity = 72/127 (56.69%), Postives = 79/127 (62.20%), Query Frame = 0


Query: 8   VEKTKGRKEEVVSREYTINLHKRLHGWYVHFIFLSTFKKKAPKAIKEIRKFAEKAMGTKD 67
           + + KGRKEEV++REYTINLH+RLH          TFKKKAPKAIKEIRKFAEKAMGTKD
Sbjct: 1   MSEKKGRKEEVITREYTINLHRRLH--------KCTFKKKAPKAIKEIRKFAEKAMGTKD 60

Query: 68  VRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGT 127
           VRVD                                  EE +SLVTVAEIPAEGL GLGT
Sbjct: 61  VRVD----------------------------------EEFFSLVTVAEIPAEGLSGLGT 85

Query: 128 KVIEEDD 135
           KVIEE+D
Sbjct: 121 KVIEEED 85

The following BLAST results are available for this feature:

BLAST of Lsi11G002010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46290	4.3e-52	83.59	60S ribosomal protein L31 OS=Nicotiana glutinosa OX=35889 GN=RPL31 PE=2 SV=1	[more]
Q9MAV7	7.4e-52	84.38	60S ribosomal protein L31 OS=Panax ginseng OX=4054 GN=RPL31 PE=2 SV=1	[more]
Q9M573	5.3e-50	84.68	60S ribosomal protein L31 OS=Perilla frutescens OX=48386 GN=RPL31 PE=2 SV=1	[more]
P51420	1.3e-48	79.53	60S ribosomal protein L31-3 OS=Arabidopsis thaliana OX=3702 GN=RPL31C PE=3 SV=2	[more]
Q9STR1	2.2e-48	78.74	60S ribosomal protein L31-2 OS=Arabidopsis thaliana OX=3702 GN=RPL31B PE=3 SV=1	[more]

BLAST of Lsi11G002010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6FLA9	2.5e-55	86.23	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_001943 PE=3 SV=1	[more]
A0A5D3CKL3	4.3e-55	92.97	60S ribosomal protein L31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1KK05	4.3e-55	92.97	60S ribosomal protein L31 OS=Cucurbita maxima OX=3661 GN=LOC111493875 PE=3 SV=1	[more]
A0A6J1G2V4	4.3e-55	92.97	60S ribosomal protein L31 OS=Cucurbita moschata OX=3662 GN=LOC111450292 PE=3 SV=...	[more]
A0A1S3C9P7	4.3e-55	92.97	60S ribosomal protein L31 OS=Cucumis melo OX=3656 GN=LOC103498384 PE=3 SV=1	[more]

BLAST of Lsi11G002010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4371415.1	5.3e-55	86.23	hypothetical protein F8388_001943 [Cannabis sativa] >KAF4398587.1 hypothetical p...	[more]
XP_008459190.1	9.0e-55	92.97	PREDICTED: 60S ribosomal protein L31 [Cucumis melo] >XP_022946109.1 60S ribosoma...	[more]
RVW38234.1	1.2e-54	89.47	60S ribosomal protein L31 [Vitis vinifera]	[more]
XP_022154770.1	4.4e-54	91.41	60S ribosomal protein L31 [Momordica charantia]	[more]
XP_008450816.1	5.8e-54	91.41	PREDICTED: 60S ribosomal protein L31 [Cucumis melo] >XP_022928007.1 60S ribosoma...	[more]

BLAST of Lsi11G002010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56710.1	9.2e-50	79.53	Ribosomal protein L31e family protein	[more]
AT4G26230.1	1.6e-49	78.74	Ribosomal protein L31e family protein	[more]
AT2G19740.1	3.5e-49	79.53	Ribosomal protein L31e family protein	[more]
AT5G56710.2	2.2e-27	56.69	Ribosomal protein L31e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000054	Ribosomal protein L31e	SMART	SM01380	Ribosomal_L31e_2	coord: 16..107 e-value: 3.4E-47 score: 172.8
IPR000054	Ribosomal protein L31e	PFAM	PF01198	Ribosomal_L31e	coord: 17..106 e-value: 5.3E-37 score: 125.9
IPR000054	Ribosomal protein L31e	PANTHER	PTHR10956	60S RIBOSOMAL PROTEIN L31	coord: 7..134
IPR000054	Ribosomal protein L31e	CDD	cd00463	Ribosomal_L31e	coord: 15..106 e-value: 3.90295E-32 score: 106.885
IPR023621	Ribosomal protein L31e domain superfamily	GENE3D	3.10.440.10		coord: 14..134 e-value: 1.0E-44 score: 153.0
IPR023621	Ribosomal protein L31e domain superfamily	SUPERFAMILY	54575	Ribosomal protein L31e	coord: 17..106
None	No IPR available	PANTHER	PTHR10956:SF33	60S RIBOSOMAL PROTEIN L31-2-RELATED	coord: 7..134
IPR020052	Ribosomal protein L31e, conserved site	PROSITE	PS01144	RIBOSOMAL_L31E	coord: 68..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G002010.1	Lsi11G002010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome