Lsi11G001650 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G001650
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	40S ribosomal S3-like protein
Location	chr11: 1765450 .. 1767813 (+)
RNA-Seq Expression	Lsi11G001650
Synteny	Lsi11G001650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGTAGCTGATGGAGTGTTTTTTGCTGAGCTAAACGAGGTTTTGACCCGAGAGTTGGCCGAGGATGGGTACTCCGGTGTCGAGGTTAGAGTAACTCCTATGCGCACTGAGATCATCATCCGAGCCACCCGTACCCAAAATGTTCTCGGTTAGTGTACCTTGATTTTTCAATTCAGTTGATTAAACAACCTACCTTCTTCGTTCGTTGGATTCAACGCCTTTGATTAACATTAATCGATATCGCTTTAGTAATTTTCTTCGAACTTTTTTTGGTTGTATAGGTGAAAAGGGTAGGAGAATTAGGGAACTCACCTCGGTTGTGCAGAAGCGGTTCAAGTTTCCGGAGAACAGTGTTGAGCTTTATGCCGAGAAAGTTAACAACAGAGGGCTTTGTGCCATTGCCCAAGCCGAGTCACTTCGTTATAAGCTACTTGGTGGCCTTGCTGTTCGGAGGTGCTTTTTCGTTTTCGTACCACTAACTACTTGTAGCATTATTATTATCATTATAGTTTTATTGATTTGAATTGAAATTCTAATATGATTTATGATTATGATAGAATAAAGATCACAGAATTCTTATCTTCTTGCGCACAGCTCTTATATCTGTTTAATGCAGTATTTTTGACTAATTATATCAATCTCATTTATGGGATGACTTCGTTTTAGTTTCATAAAAAATGGTTTATTTTTCCCTGGATTCTTCCGTATGTCATCTACAAAGCAGATTGGTGTTTTGGTACCAACTTTGTGTCGGAAGGTGACGATATAAATTGAGCTCTTCCATTTGTTAATCATTGTGGAATCATTTTGTTTCACACTGTAACCTTAGGGAGTAGACATGCTGTTTTCTGGTAGTATTTCTTTAGCCTCCTTTTTCCGCAACTTGGAATTTTGTTGTCACAATCTTGTCACCTTGTTTGTAAAGGCTAAAGATGGTATTGGCAAACACAATGTTTGTATGGAAGTACTAACAAATCAAACCTATCAATTATCGCTTTCTTGAAAACAGATCCTACAATGTCATTCTCAATACTATTTGTAGCTAGGTAGCATGGACCTATTGTTCGAAAAGAAGTCTCCTAGTTTTTTTCTTGTGTTTTTTAAATTTTGGACAGGGGACATTCAAACATGTCTTCCTTTAAAAGCTTATGAGAGGAGAACAGACATTTAACCTAGCCCGTTTTGAATCCCACTTTCCAACCCATTACCTGTCTTATTATGACCAACCCTAGAATTTAACCCAATCTTAGAAGCCCATTTAACAGACAGAATGAAATAATGAAGCATTGTGTTCAGTGCTCAGTGCTATGCTACAAGTACATTCTAGTTTTCTTTTTGTTAAATCTACATGTTTTGTTCTAATTCCAAGTATTCAAGTATTGTCGATATTATTCAGAAAAAAAGTGTCCCCTAGTATTTATGTCTTACATTTTCAGTAAGTGACATGTAATTGTGTCTATGTCATGTCATATGCCTACCTTGTCTTGTGTCCATGCTTCTTCAATTATTACCAATTGTCACTAATAGATAAACTTTTTTCTTCAAGCTTGTCTTCCATATTTTTTAATCTAGAAGGAAAACTATCAATATGTTGAATTAGTACAGTTTATAATATATTAGAGTCTGTAGTTTGAGCTCTCTCTAAGCTAAAGCCTTTAATTCCCTAGTTTTTTTTTTTTTGAATATTTGGCTTTTGTGCATTTCATTGTAGGAGTGTCCTCTATTATTATCTCATAGGTAGTTGCTATTAATCCTAGGAGTACCATAATGAGCATATATTTCGTTTAGACAATCTGAATGTTTATATGTGTACTTTTTCCATCAGGGCATGCTACGGTGTACTGAGATTCGTCATGGAAAGTGGAGCAAAGGGTTGCGAGGTTAGCTTTGTAGCTCAATCCATTATTATCACTATATGAAAAATTCGTTTAGCAACATTTAATTTGTAACATTCCAACAGGTGATTGTTAGTGGAAAACTCAGGGCACAGCGTGCAAAGTCTATGAAGTTCAAAGATGGATATATGATCTCTTCAGGTCAACCAGTCAGAGACTATATTGACTCGGCTGTTAGACACGTTCTTCTCAGACAGGTTAGCTAATAGCTTCGAGTCGTAAAAAAATAGAACAAGCGCTCACACCATACATCTGTCACTTGGTAAATGTTATTTTCTTTTTGGCTCAGGGAGTTCTTGGTATCAAAGTTAAGATCATGCTTGATTGGGATCCTAAGGGCAAGCAAGGCCCTACCACCCCTCTTCCTGATGTTGTCACCATCCACTCTCCCAAGGAGGAGGAAGAAATCGTCCACAGACCCGCAGCAGTTTTGACCACCGATATTGAGGTTCCGGTAGCAGTAGCCTAA

mRNA sequence

TTCGTAGCTGATGGAGTGTTTTTTGCTGAGCTAAACGAGGTTTTGACCCGAGAGTTGGCCGAGGATGGGTACTCCGGTGTCGAGGTTAGAGTAACTCCTATGCGCACTGAGATCATCATCCGAGCCACCCGTACCCAAAATGTTCTCGGTGAAAAGGGTAGGAGAATTAGGGAACTCACCTCGGTTGTGCAGAAGCGGTTCAAGTTTCCGGAGAACAGTGTTGAGCTTTATGCCGAGAAAGTTAACAACAGAGGGCTTTGTGCCATTGCCCAAGCCGAGTCACTTCGTTATAAGCTACTTGGTGGCCTTGCTGTTCGGAGGGCATGCTACGGTGTACTGAGATTCGTCATGGAAAGTGGAGCAAAGGGTTGCGAGGTGATTGTTAGTGGAAAACTCAGGGCACAGCGTGCAAAGTCTATGAAGTTCAAAGATGGATATATGATCTCTTCAGGTCAACCAGTCAGAGACTATATTGACTCGGCTGTTAGACACGTTCTTCTCAGACAGGGAGTTCTTGGTATCAAAGTTAAGATCATGCTTGATTGGGATCCTAAGGGCAAGCAAGGCCCTACCACCCCTCTTCCTGATGTTGTCACCATCCACTCTCCCAAGGAGGAGGAAGAAATCGTCCACAGACCCGCAGCAGTTTTGACCACCGATATTGAGGTTCCGGTAGCAGTAGCCTAA

Coding sequence (CDS)

TTCGTAGCTGATGGAGTGTTTTTTGCTGAGCTAAACGAGGTTTTGACCCGAGAGTTGGCCGAGGATGGGTACTCCGGTGTCGAGGTTAGAGTAACTCCTATGCGCACTGAGATCATCATCCGAGCCACCCGTACCCAAAATGTTCTCGGTGAAAAGGGTAGGAGAATTAGGGAACTCACCTCGGTTGTGCAGAAGCGGTTCAAGTTTCCGGAGAACAGTGTTGAGCTTTATGCCGAGAAAGTTAACAACAGAGGGCTTTGTGCCATTGCCCAAGCCGAGTCACTTCGTTATAAGCTACTTGGTGGCCTTGCTGTTCGGAGGGCATGCTACGGTGTACTGAGATTCGTCATGGAAAGTGGAGCAAAGGGTTGCGAGGTGATTGTTAGTGGAAAACTCAGGGCACAGCGTGCAAAGTCTATGAAGTTCAAAGATGGATATATGATCTCTTCAGGTCAACCAGTCAGAGACTATATTGACTCGGCTGTTAGACACGTTCTTCTCAGACAGGGAGTTCTTGGTATCAAAGTTAAGATCATGCTTGATTGGGATCCTAAGGGCAAGCAAGGCCCTACCACCCCTCTTCCTGATGTTGTCACCATCCACTCTCCCAAGGAGGAGGAAGAAATCGTCCACAGACCCGCAGCAGTTTTGACCACCGATATTGAGGTTCCGGTAGCAGTAGCCTAA

Protein sequence

FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRPAAVLTTDIEVPVAVA

Homology

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BLAST of Lsi11G001650 vs. ExPASy Swiss-Prot
Match: Q9M339 (40S ribosomal protein S3-2 OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 8.8e-106
Identity = 197/216 (91.20%), Postives = 205/216 (94.91%), Query Frame = 0


Query: 1   FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 60
           FVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT
Sbjct: 11  FVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 70

Query: 61  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 120
           S+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG
Sbjct: 71  SLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 130

Query: 121 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 180
           AKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YIDSAVRHVLLRQGVLGIKVK+ML
Sbjct: 131 AKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGIKVKVML 190

Query: 181 DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRPAAV 217
           DWDPKG  GP TPLPDVV IHSPKEEE I + PA V
Sbjct: 191 DWDPKGISGPKTPLPDVVIIHSPKEEEAI-YAPAQV 225

[Close]

BLAST of Lsi11G001650 vs. ExPASy Swiss-Prot
Match: Q9FJA6 (40S ribosomal protein S3-3 OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 1.2e-105
Identity = 197/226 (87.17%), Postives = 211/226 (93.36%), Query Frame = 0


Query: 1   FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 60
           FVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT
Sbjct: 11  FVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 70

Query: 61  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 120
           S+VQKRFKFP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG
Sbjct: 71  SLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 130

Query: 121 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 180
           AKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YID+AVRHVLLRQGVLG+KVKIML
Sbjct: 131 AKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGLKVKIML 190

Query: 181 DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRPAAVLTTDIEVPVA 227
           DWDPKGKQGP TPLPDVV IH+PKE++  +  PA V+T    VP A
Sbjct: 191 DWDPKGKQGPMTPLPDVVIIHTPKEDDVYI-APAQVVTQAAFVPEA 235

[Close]

BLAST of Lsi11G001650 vs. ExPASy Swiss-Prot
Match: Q9SIP7 (40S ribosomal protein S3-1 OS=Arabidopsis thaliana OX=3702 GN=RPS3A PE=1 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 1.1e-103
Identity = 189/206 (91.75%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 60
           FVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT
Sbjct: 11  FVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 70

Query: 61  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 120
           S+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG
Sbjct: 71  SLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 130

Query: 121 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 180
           AKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YID+AVRHVLLRQGVLGIKVKIML
Sbjct: 131 AKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGIKVKIML 190

Query: 181 DWDPKGKQGPTTPLPDVVTIHSPKEE 207
           DWDP GK GP TPLPDVV IH+PK++
Sbjct: 191 DWDPTGKSGPKTPLPDVVIIHAPKDD 216

[Close]

BLAST of Lsi11G001650 vs. ExPASy Swiss-Prot
Match: P02350 (40S ribosomal protein S3-A OS=Xenopus laevis OX=8355 GN=rps3-a PE=2 SV=2)

HSP 1 Score: 340.1 bits (871), Expect = 1.9e-92
Identity = 175/206 (84.95%), Postives = 183/206 (88.83%), Query Frame = 0


Query: 1   FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 60
           FVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT
Sbjct: 11  FVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELT 70

Query: 61  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 120
           +VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRF+MESG
Sbjct: 71  AVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130

Query: 121 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 180
           AKGCEV+VSGKLR QRAKSMKF DG MI SG PV  Y+D+AVRHVLLRQGVLGIKVKIML
Sbjct: 131 AKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIML 190

Query: 181 DWDPKGKQGPTTPLPDVVTIHSPKEE 207
            WDP GK GP  PLPD V+I  PK+E
Sbjct: 191 PWDPSGKIGPKKPLPDHVSIVEPKDE 216

[Close]

BLAST of Lsi11G001650 vs. ExPASy Swiss-Prot
Match: E2RH47 (40S ribosomal protein S3 OS=Canis lupus familiaris OX=9615 GN=RPS3 PE=1 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 1.9e-92
Identity = 175/206 (84.95%), Postives = 183/206 (88.83%), Query Frame = 0


Query: 1   FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 60
           FVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT
Sbjct: 11  FVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELT 70

Query: 61  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 120
           +VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRF+MESG
Sbjct: 71  AVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG 130

Query: 121 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 180
           AKGCEV+VSGKLR QRAKSMKF DG MI SG PV  Y+D+AVRHVLLRQGVLGIKVKIML
Sbjct: 131 AKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIML 190

Query: 181 DWDPKGKQGPTTPLPDVVTIHSPKEE 207
            WDP GK GP  PLPD V+I  PK+E
Sbjct: 191 PWDPSGKIGPKKPLPDHVSIVEPKDE 216

[Close]

BLAST of Lsi11G001650 vs. ExPASy TrEMBL
Match: A0A5A7UZY3 (40S ribosomal protein S3-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001180 PE=3 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 3.3e-119
Identity = 225/227 (99.12%), Postives = 225/227 (99.12%), Query Frame = 0


Query: 1   FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 60
           FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT
Sbjct: 571 FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 630

Query: 61  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 120
           SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG
Sbjct: 631 SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 690

Query: 121 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 180
           AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML
Sbjct: 691 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 750

Query: 181 DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRPAAVLTTDIEVPVAV 228
           DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRP AVLT DIEVPVAV
Sbjct: 751 DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRPPAVLTADIEVPVAV 797

[Close]

BLAST of Lsi11G001650 vs. ExPASy TrEMBL
Match: A0A0A0LHQ6 (KH type-2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000230 PE=3 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 3.3e-119
Identity = 225/227 (99.12%), Postives = 225/227 (99.12%), Query Frame = 0


Query: 1   FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 60
           FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT
Sbjct: 11  FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 70

Query: 61  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 120
           SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG
Sbjct: 71  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 130

Query: 121 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 180
           AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML
Sbjct: 131 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 190

Query: 181 DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRPAAVLTTDIEVPVAV 228
           DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRP AVLT DIEVPVAV
Sbjct: 191 DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRPPAVLTADIEVPVAV 237

[Close]

BLAST of Lsi11G001650 vs. ExPASy TrEMBL
Match: A0A1S3CAV4 (40S ribosomal protein S3-2 OS=Cucumis melo OX=3656 GN=LOC103498727 PE=3 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 3.3e-119
Identity = 225/227 (99.12%), Postives = 225/227 (99.12%), Query Frame = 0


Query: 1   FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 60
           FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT
Sbjct: 11  FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 70

Query: 61  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 120
           SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG
Sbjct: 71  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 130

Query: 121 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 180
           AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML
Sbjct: 131 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 190

Query: 181 DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRPAAVLTTDIEVPVAV 228
           DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRP AVLT DIEVPVAV
Sbjct: 191 DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRPPAVLTADIEVPVAV 237

[Close]

BLAST of Lsi11G001650 vs. ExPASy TrEMBL
Match: A0A6J1G4R4 (40S ribosomal protein S3-2-like OS=Cucurbita moschata OX=3662 GN=LOC111450719 PE=3 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 6.1e-118
Identity = 226/233 (97.00%), Postives = 226/233 (97.00%), Query Frame = 0


Query: 1   FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 60
           FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT
Sbjct: 11  FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 70

Query: 61  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 120
           SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG
Sbjct: 71  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 130

Query: 121 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 180
           AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML
Sbjct: 131 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 190

Query: 181 DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRP-----AAVLTTDIEVPVAVA 229
           DWDPKGKQGPTTPLPDVV IHSPKEEEEIVHRP     AAVLTTDIEVPV VA
Sbjct: 191 DWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAAAVLTTDIEVPVVVA 243

[Close]

BLAST of Lsi11G001650 vs. ExPASy TrEMBL
Match: A0A6J1DMD4 (40S ribosomal protein S3-2-like OS=Momordica charantia OX=3673 GN=LOC111021901 PE=3 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 8.0e-118
Identity = 223/228 (97.81%), Postives = 226/228 (99.12%), Query Frame = 0


Query: 1   FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 60
           FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT
Sbjct: 11  FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 70

Query: 61  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 120
           SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG
Sbjct: 71  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 130

Query: 121 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 180
           AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML
Sbjct: 131 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 190

Query: 181 DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRPAAVLTTDIEVPVAVA 229
           DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRP A+L+TDIE+PV VA
Sbjct: 191 DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRP-AILSTDIEIPVVVA 237

[Close]

BLAST of Lsi11G001650 vs. NCBI nr
Match: XP_038890738.1 (40S ribosomal protein S3-2 [Benincasa hispida])

HSP 1 Score: 441.4 bits (1134), Expect = 4.7e-120
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 1   FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 60
           FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT
Sbjct: 11  FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 70

Query: 61  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 120
           SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG
Sbjct: 71  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 130

Query: 121 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 180
           AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML
Sbjct: 131 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 190

Query: 181 DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRPAAVLTTDIEVPVAV 228
           DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRPAAVLTTDIEVPVAV
Sbjct: 191 DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRPAAVLTTDIEVPVAV 237

[Close]

BLAST of Lsi11G001650 vs. NCBI nr
Match: KAA0061472.1 (40S ribosomal protein S3-3 [Cucumis melo var. makuwa] >TYK10802.1 40S ribosomal protein S3-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 437.6 bits (1124), Expect = 6.7e-119
Identity = 225/227 (99.12%), Postives = 225/227 (99.12%), Query Frame = 0


Query: 1   FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 60
           FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT
Sbjct: 571 FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 630

Query: 61  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 120
           SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG
Sbjct: 631 SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 690

Query: 121 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 180
           AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML
Sbjct: 691 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 750

Query: 181 DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRPAAVLTTDIEVPVAV 228
           DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRP AVLT DIEVPVAV
Sbjct: 751 DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRPPAVLTADIEVPVAV 797

[Close]

BLAST of Lsi11G001650 vs. NCBI nr
Match: XP_004141068.1 (40S ribosomal protein S3-2 [Cucumis sativus] >XP_008459686.1 PREDICTED: 40S ribosomal protein S3-2 [Cucumis melo] >KGN60514.1 hypothetical protein Csa_019414 [Cucumis sativus])

HSP 1 Score: 437.6 bits (1124), Expect = 6.7e-119
Identity = 225/227 (99.12%), Postives = 225/227 (99.12%), Query Frame = 0


Query: 1   FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 60
           FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT
Sbjct: 11  FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 70

Query: 61  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 120
           SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG
Sbjct: 71  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 130

Query: 121 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 180
           AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML
Sbjct: 131 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 190

Query: 181 DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRPAAVLTTDIEVPVAV 228
           DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRP AVLT DIEVPVAV
Sbjct: 191 DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRPPAVLTADIEVPVAV 237

[Close]

BLAST of Lsi11G001650 vs. NCBI nr
Match: XP_023546322.1 (40S ribosomal protein S3-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 434.9 bits (1117), Expect = 4.4e-118
Identity = 226/229 (98.69%), Postives = 226/229 (98.69%), Query Frame = 0


Query: 1   FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 60
           FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT
Sbjct: 11  FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 70

Query: 61  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 120
           SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG
Sbjct: 71  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 130

Query: 121 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 180
           AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML
Sbjct: 131 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 190

Query: 181 DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRP-AAVLTTDIEVPVAVA 229
           DWDPKGKQGPTTPLPDVV IHSPKEEEEIVHRP AAVLTTDIEVPV VA
Sbjct: 191 DWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAVLTTDIEVPVVVA 239

[Close]

BLAST of Lsi11G001650 vs. NCBI nr
Match: KAG6599520.1 (40S ribosomal protein S3-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 434.1 bits (1115), Expect = 7.4e-118
Identity = 226/231 (97.84%), Postives = 226/231 (97.84%), Query Frame = 0


Query: 1   FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 60
           FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT
Sbjct: 661 FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 720

Query: 61  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 120
           SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG
Sbjct: 721 SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 780

Query: 121 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 180
           AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML
Sbjct: 781 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 840

Query: 181 DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRP---AAVLTTDIEVPVAVA 229
           DWDPKGKQGPTTPLPDVV IHSPKEEEEIVHRP   AAVLTTDIEVPV VA
Sbjct: 841 DWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPAAAAAVLTTDIEVPVVVA 891

[Close]

BLAST of Lsi11G001650 vs. TAIR 10
Match: AT3G53870.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 384.4 bits (986), Expect = 6.3e-107
Identity = 197/216 (91.20%), Postives = 205/216 (94.91%), Query Frame = 0


Query: 1   FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 60
           FVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT
Sbjct: 11  FVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 70

Query: 61  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 120
           S+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG
Sbjct: 71  SLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 130

Query: 121 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 180
           AKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YIDSAVRHVLLRQGVLGIKVK+ML
Sbjct: 131 AKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGIKVKVML 190

Query: 181 DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRPAAV 217
           DWDPKG  GP TPLPDVV IHSPKEEE I + PA V
Sbjct: 191 DWDPKGISGPKTPLPDVVIIHSPKEEEAI-YAPAQV 225

[Close]

BLAST of Lsi11G001650 vs. TAIR 10
Match: AT5G35530.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 384.0 bits (985), Expect = 8.2e-107
Identity = 197/226 (87.17%), Postives = 211/226 (93.36%), Query Frame = 0


Query: 1   FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 60
           FVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT
Sbjct: 11  FVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 70

Query: 61  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 120
           S+VQKRFKFP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG
Sbjct: 71  SLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 130

Query: 121 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 180
           AKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YID+AVRHVLLRQGVLG+KVKIML
Sbjct: 131 AKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGLKVKIML 190

Query: 181 DWDPKGKQGPTTPLPDVVTIHSPKEEEEIVHRPAAVLTTDIEVPVA 227
           DWDPKGKQGP TPLPDVV IH+PKE++  +  PA V+T    VP A
Sbjct: 191 DWDPKGKQGPMTPLPDVVIIHTPKEDDVYI-APAQVVTQAAFVPEA 235

[Close]

BLAST of Lsi11G001650 vs. TAIR 10
Match: AT2G31610.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 377.5 bits (968), Expect = 7.7e-105
Identity = 189/206 (91.75%), Postives = 199/206 (96.60%), Query Frame = 0


Query: 1   FVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 60
           FVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT
Sbjct: 11  FVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELT 70

Query: 61  SVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 120
           S+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG
Sbjct: 71  SLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESG 130

Query: 121 AKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIML 180
           AKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YID+AVRHVLLRQGVLGIKVKIML
Sbjct: 131 AKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGIKVKIML 190

Query: 181 DWDPKGKQGPTTPLPDVVTIHSPKEE 207
           DWDP GK GP TPLPDVV IH+PK++
Sbjct: 191 DWDPTGKSGPKTPLPDVVIIHAPKDD 216

The following BLAST results are available for this feature:

BLAST of Lsi11G001650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M339	8.8e-106	91.20	40S ribosomal protein S3-2 OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1	[more]
Q9FJA6	1.2e-105	87.17	40S ribosomal protein S3-3 OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1	[more]
Q9SIP7	1.1e-103	91.75	40S ribosomal protein S3-1 OS=Arabidopsis thaliana OX=3702 GN=RPS3A PE=1 SV=1	[more]
P02350	1.9e-92	84.95	40S ribosomal protein S3-A OS=Xenopus laevis OX=8355 GN=rps3-a PE=2 SV=2	[more]
E2RH47	1.9e-92	84.95	40S ribosomal protein S3 OS=Canis lupus familiaris OX=9615 GN=RPS3 PE=1 SV=1	[more]

BLAST of Lsi11G001650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZY3	3.3e-119	99.12	40S ribosomal protein S3-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0LHQ6	3.3e-119	99.12	KH type-2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000230 P...	[more]
A0A1S3CAV4	3.3e-119	99.12	40S ribosomal protein S3-2 OS=Cucumis melo OX=3656 GN=LOC103498727 PE=3 SV=1	[more]
A0A6J1G4R4	6.1e-118	97.00	40S ribosomal protein S3-2-like OS=Cucurbita moschata OX=3662 GN=LOC111450719 PE...	[more]
A0A6J1DMD4	8.0e-118	97.81	40S ribosomal protein S3-2-like OS=Momordica charantia OX=3673 GN=LOC111021901 P...	[more]

BLAST of Lsi11G001650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890738.1	4.7e-120	100.00	40S ribosomal protein S3-2 [Benincasa hispida]	[more]
KAA0061472.1	6.7e-119	99.12	40S ribosomal protein S3-3 [Cucumis melo var. makuwa] >TYK10802.1 40S ribosomal ...	[more]
XP_004141068.1	6.7e-119	99.12	40S ribosomal protein S3-2 [Cucumis sativus] >XP_008459686.1 PREDICTED: 40S ribo...	[more]
XP_023546322.1	4.4e-118	98.69	40S ribosomal protein S3-2-like [Cucurbita pepo subsp. pepo]	[more]
KAG6599520.1	7.4e-118	97.84	40S ribosomal protein S3-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lsi11G001650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53870.1	6.3e-107	91.20	Ribosomal protein S3 family protein	[more]
AT5G35530.1	8.2e-107	87.17	Ribosomal protein S3 family protein	[more]
AT2G31610.1	7.7e-105	91.75	Ribosomal protein S3 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005703	Ribosomal protein S3, eukaryotic/archaeal	TIGRFAM	TIGR01008	TIGR01008	coord: 1..201 e-value: 1.6E-69 score: 231.6
IPR001351	Ribosomal protein S3, C-terminal	PFAM	PF00189	Ribosomal_S3_C	coord: 96..178 e-value: 2.1E-25 score: 89.0
IPR036419	Ribosomal protein S3, C-terminal domain superfamily	GENE3D	3.30.1140.32		coord: 83..209 e-value: 7.8E-67 score: 225.1
IPR036419	Ribosomal protein S3, C-terminal domain superfamily	SUPERFAMILY	54821	Ribosomal protein S3 C-terminal domain	coord: 83..181
IPR004044	K Homology domain, type 2	PFAM	PF07650	KH_2	coord: 10..83 e-value: 9.7E-13 score: 47.7
IPR004044	K Homology domain, type 2	PROSITE	PS50823	KH_TYPE_2	coord: 11..82 score: 11.333969
IPR015946	K homology domain-like, alpha/beta	GENE3D	3.30.300.20		coord: 1..81 e-value: 3.2E-43 score: 147.6
None	No IPR available	PANTHER	PTHR11760:SF51	RIBOSOMAL PROTEIN S3, PUTATIVE-RELATED	coord: 1..224
None	No IPR available	PANTHER	PTHR11760	30S/40S RIBOSOMAL PROTEIN S3	coord: 1..224
None	No IPR available	CDD	cd02413	40S_S3_KH	coord: 5..85 e-value: 1.83542E-51 score: 159.695
IPR018280	Ribosomal protein S3, conserved site	PROSITE	PS00548	RIBOSOMAL_S3	coord: 137..173
IPR009019	K homology domain superfamily, prokaryotic type	SUPERFAMILY	54814	Prokaryotic type KH domain (KH-domain type II)	coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G001650.1	Lsi11G001650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005634	nucleus
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome