Lsi11G001560 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G001560
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RING-box protein 1a-like
Location	chr11: 1694949 .. 1695730 (-)
RNA-Seq Expression	Lsi11G001560
Synteny	Lsi11G001560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAGACTGTTTTTAACCAGCTAAACCGGGTGTCAAGTCAACATTATTTTTTTCCTTCCTAAAAAAACTTTTTCCTTTTTCTACTATGTGTCGACATCATGATGTAATATCGATCGGTTAAATACAAAATAAAAATTCAATGGTAAACAACATTTTTTTTTGGAAAATAAAAAATTTAAGAGCCAATCGGAGGAATTGAGTCCGCCCGTTTCGCGCCCACGGAGGAGGAAGAAGCATCCTTTATTGCGAGTTATTATGGCCACCTTGGACTCCGACGTGCCGATGGTTCCGGCCGGCGACGCTTCGAGCAGTGCCGGCCCTTCATCTACCAAGAAACCCAAGCGTTTTGAGATCAAGAAGTGGAACGCCGTCGCTCTTTGGGCATGGGGTATTTTCAAAACCCTAATCTTTACGATAACTGCTCTCACTGTCTAGTTTACCTTCGTGCATCAAAACCCTCGTCTCTAATTCGCATGTTGTTCATTCTTAATGCAGATATTGTTGTCGATAACTGTGCGATCTGTAGGAACCATATCATGGATCTCTGTAAGTTTGTCATTATTTGGACCTAAGTTTTAAGATATTTGGAGTGATCTTCTTCCTCTTCGCTTCCGTTGTCCTTCCTGCCCTTCTGAAAATATTATGTATATTTATTTTAACCATCTACCATTGTTTGGTATCTAGGTATTGAGTGTCAAGCAAACCAGGCTAGCGCAACCAGCGAGGAATGTACCGTGGCTTGGGGTACGTTTTCTTATTCCCTCTCTCTGCTGAATATTTAG

mRNA sequence

CCCAGACTGTTTTTAACCAGCTAAACCGGGTGTCAAGTCAACATTATTTTTTTCCTTCCTAAAAAAACTTTTTCCTTTTTCTACTATGTGTCGACATCATGATGTAATATCGATCGGTTAAATACAAAATAAAAATTCAATGGTAAACAACATTTTTTTTTGGAAAATAAAAAATTTAAGAGCCAATCGGAGGAATTGAGTCCGCCCGTTTCGCGCCCACGGAGGAGGAAGAAGCATCCTTTATTGCGAGTTATTATGGCCACCTTGGACTCCGACGTGCCGATGGTTCCGGCCGGCGACGCTTCGAGCAGTGCCGGCCCTTCATCTACCAAGAAACCCAAGCGTTTTGAGATCAAGAAGTGGAACGCCGTCGCTCTTTGGGCATGGGATATTGTTGTCGATAACTGTGCGATCTGTAGGAACCATATCATGGATCTCTGTATTGAGTGTCAAGCAAACCAGGCTAGCGCAACCAGCGAGGAATGTACCGTGGCTTGGGGTACGTTTTCTTATTCCCTCTCTCTGCTGAATATTTAG

Coding sequence (CDS)

ATGGCCACCTTGGACTCCGACGTGCCGATGGTTCCGGCCGGCGACGCTTCGAGCAGTGCCGGCCCTTCATCTACCAAGAAACCCAAGCGTTTTGAGATCAAGAAGTGGAACGCCGTCGCTCTTTGGGCATGGGATATTGTTGTCGATAACTGTGCGATCTGTAGGAACCATATCATGGATCTCTGTATTGAGTGTCAAGCAAACCAGGCTAGCGCAACCAGCGAGGAATGTACCGTGGCTTGGGGTACGTTTTCTTATTCCCTCTCTCTGCTGAATATTTAG

Protein sequence

MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYSLSLLNI

Homology

[Close]

BLAST of Lsi11G001560 vs. ExPASy Swiss-Prot
Match: Q940X7 (RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.9e-36
Identity = 74/88 (84.09%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 1  MATLDSDVPMVPAGDASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
          MATLDSDV M+PAG+ASSS A  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1  MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61 DLCIECQANQASATSEECTVAWGTFSYS 88
          DLCIECQANQASATSEECTVAWG  +++
Sbjct: 61 DLCIECQANQASATSEECTVAWGVCNHA 88

[Close]

BLAST of Lsi11G001560 vs. ExPASy Swiss-Prot
Match: Q9M2B0 (RING-box protein 1b OS=Arabidopsis thaliana OX=3702 GN=RBX1B PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-29
Identity = 65/88 (73.86%), Postives = 76/88 (86.36%), Query Frame = 0


Query: 1  MATLDSDVPMVPAGDASSSAGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
          MA+L+SDV M   G++SS + P SS+K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1  MASLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61 DLCIECQANQASATSEECTVAWGTFSYS 88
          DLCIEC ANQASATSEECTVAWG  +++
Sbjct: 61 DLCIECLANQASATSEECTVAWGVCNHA 85

[Close]

BLAST of Lsi11G001560 vs. ExPASy Swiss-Prot
Match: P62877 (E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.8e-28
Identity = 58/78 (74.36%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 10 MVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
          M  A D  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1  MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 70 ASATSEECTVAWGTFSYS 88
          ASATSEECTVAWG  +++
Sbjct: 61 ASATSEECTVAWGVCNHA 78

[Close]

BLAST of Lsi11G001560 vs. ExPASy Swiss-Prot
Match: P62878 (E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.8e-28
Identity = 58/78 (74.36%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 10 MVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
          M  A D  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1  MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 70 ASATSEECTVAWGTFSYS 88
          ASATSEECTVAWG  +++
Sbjct: 61 ASATSEECTVAWGVCNHA 78

[Close]

BLAST of Lsi11G001560 vs. ExPASy Swiss-Prot
Match: Q8QG64 (RING-box protein 1 OS=Salmo salar OX=8030 GN=rbx1 PE=2 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 5.2e-28
Identity = 57/78 (73.08%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 10 MVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
          M  A D  + +  +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1  MAAAMDVDTPSATNSGASKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 70 ASATSEECTVAWGTFSYS 88
          ASATSEECTVAWG  +++
Sbjct: 61 ASATSEECTVAWGVCNHA 78

[Close]

BLAST of Lsi11G001560 vs. ExPASy TrEMBL
Match: A0A6J1I027 (RING-box protein 1a OS=Cucurbita maxima OX=3661 GN=LOC111467761 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.0e-39
Identity = 80/87 (91.95%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
          MATLDSDVPMVPAG+ASSSAGPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1  MATLDSDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61 LCIECQANQASATSEECTVAWGTFSYS 88
          LCIECQANQASATSEECTVAWG  +++
Sbjct: 61 LCIECQANQASATSEECTVAWGVCNHA 87

[Close]

BLAST of Lsi11G001560 vs. ExPASy TrEMBL
Match: A0A6J1F460 (RING-box protein 1a OS=Cucurbita moschata OX=3662 GN=LOC111440096 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.0e-39
Identity = 80/87 (91.95%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
          MATLDSDVPMVPAG+ASSSAGPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1  MATLDSDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61 LCIECQANQASATSEECTVAWGTFSYS 88
          LCIECQANQASATSEECTVAWG  +++
Sbjct: 61 LCIECQANQASATSEECTVAWGVCNHA 87

[Close]

BLAST of Lsi11G001560 vs. ExPASy TrEMBL
Match: A0A6P4A6G4 (RING-box protein 1a OS=Ziziphus jujuba OX=326968 GN=LOC107423885 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.0e-39
Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
          MATLDSDVPMVP G+ASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1  MATLDSDVPMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61 LCIECQANQASATSEECTVAWGTFSYS 88
          LCIECQANQASATSEECTVAWG  +++
Sbjct: 61 LCIECQANQASATSEECTVAWGVCNHA 87

[Close]

BLAST of Lsi11G001560 vs. ExPASy TrEMBL
Match: A0A6J1DPM4 (RING-box protein 1a-like OS=Momordica charantia OX=3673 GN=LOC111021926 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.0e-39
Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
          MATLDSDVPMVP G+ASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1  MATLDSDVPMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61 LCIECQANQASATSEECTVAWGTFSYS 88
          LCIECQANQASATSEECTVAWG  +++
Sbjct: 61 LCIECQANQASATSEECTVAWGVCNHA 87

[Close]

BLAST of Lsi11G001560 vs. ExPASy TrEMBL
Match: A0A5N5F037 (RING-box protein 1a OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_020294 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.9e-39
Identity = 79/87 (90.80%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
          MATLDSDVPM+PAG+ SSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1  MATLDSDVPMIPAGEGSSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61 LCIECQANQASATSEECTVAWGTFSYS 88
          LCIECQANQASATSEECTVAWG  +++
Sbjct: 61 LCIECQANQASATSEECTVAWGVCNHA 87

[Close]

BLAST of Lsi11G001560 vs. NCBI nr
Match: XP_038889978.1 (RING-box protein 1a-like isoform X2 [Benincasa hispida])

HSP 1 Score: 175.3 bits (443), Expect = 2.5e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
          MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61 LCIECQANQASATSEECTVAWGT 84
          LCIECQANQASATSEECTVAWGT
Sbjct: 61 LCIECQANQASATSEECTVAWGT 83

[Close]

BLAST of Lsi11G001560 vs. NCBI nr
Match: XP_038889977.1 (RING-box protein 1a-like isoform X1 [Benincasa hispida])

HSP 1 Score: 173.7 bits (439), Expect = 7.4e-40
Identity = 82/87 (94.25%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
          MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61 LCIECQANQASATSEECTVAWGTFSYS 88
          LCIECQANQASATSEECTVAWG  +++
Sbjct: 61 LCIECQANQASATSEECTVAWGVCNHA 87

[Close]

BLAST of Lsi11G001560 vs. NCBI nr
Match: XP_022933228.1 (RING-box protein 1a [Cucurbita moschata] >XP_022960807.1 RING-box protein 1a [Cucurbita moschata] >XP_022968584.1 RING-box protein 1a [Cucurbita maxima] >XP_022988432.1 RING-box protein 1a [Cucurbita maxima] >XP_023515504.1 RING-box protein 1a [Cucurbita pepo subsp. pepo] >XP_023530609.1 RING-box protein 1a [Cucurbita pepo subsp. pepo] >KAG6588086.1 RING-box protein 1a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021972.1 RING-box protein 1a, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG6590039.1 RING-box protein 1a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023702.1 RING-box protein 1a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 170.6 bits (431), Expect = 6.2e-39
Identity = 80/87 (91.95%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
          MATLDSDVPMVPAG+ASSSAGPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1  MATLDSDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61 LCIECQANQASATSEECTVAWGTFSYS 88
          LCIECQANQASATSEECTVAWG  +++
Sbjct: 61 LCIECQANQASATSEECTVAWGVCNHA 87

[Close]

BLAST of Lsi11G001560 vs. NCBI nr
Match: KAF3439695.1 (hypothetical protein FNV43_RR17973 [Rhamnella rubrinervis])

HSP 1 Score: 170.6 bits (431), Expect = 6.2e-39
Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
          MATLDSDVPMVP G+ASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1  MATLDSDVPMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61 LCIECQANQASATSEECTVAWGTFSYS 88
          LCIECQANQASATSEECTVAWG  +++
Sbjct: 61 LCIECQANQASATSEECTVAWGVCNHA 87

[Close]

BLAST of Lsi11G001560 vs. NCBI nr
Match: XP_015889019.1 (RING-box protein 1a [Ziziphus jujuba] >XP_022154746.1 RING-box protein 1a-like [Momordica charantia])

HSP 1 Score: 170.6 bits (431), Expect = 6.2e-39
Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MATLDSDVPMVPAGDASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
          MATLDSDVPMVP G+ASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1  MATLDSDVPMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61 LCIECQANQASATSEECTVAWGTFSYS 88
          LCIECQANQASATSEECTVAWG  +++
Sbjct: 61 LCIECQANQASATSEECTVAWGVCNHA 87

[Close]

BLAST of Lsi11G001560 vs. TAIR 10
Match: AT5G20570.1 (RING-box 1 )

HSP 1 Score: 151.8 bits (382), Expect = 2.8e-37
Identity = 74/88 (84.09%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 1  MATLDSDVPMVPAGDASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
          MATLDSDV M+PAG+ASSS A  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1  MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61 DLCIECQANQASATSEECTVAWGTFSYS 88
          DLCIECQANQASATSEECTVAWG  +++
Sbjct: 61 DLCIECQANQASATSEECTVAWGVCNHA 88

[Close]

BLAST of Lsi11G001560 vs. TAIR 10
Match: AT5G20570.2 (RING-box 1 )

HSP 1 Score: 149.1 bits (375), Expect = 1.8e-36
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MATLDSDVPMVPAGDASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
          MATLDSDV M+PAG+ASSS A  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1  MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61 DLCIECQANQASATSEECTVAW 82
          DLCIECQANQASATSEECTVAW
Sbjct: 61 DLCIECQANQASATSEECTVAW 82

[Close]

BLAST of Lsi11G001560 vs. TAIR 10
Match: AT5G20570.3 (RING-box 1 )

HSP 1 Score: 137.9 bits (346), Expect = 4.2e-33
Identity = 73/106 (68.87%), Postives = 79/106 (74.53%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGDASSS-AGPSSTKKPKRFEIKKWNAVALWAWD-------------- 60
           MATLDSDV M+PAG+ASSS A  SS KK KRFEIKKW+AVALWAW               
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWGNLENPYTLSSIGLS 60

Query: 61  ----IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTFSYS 88
               IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG  +++
Sbjct: 61  MFRYIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA 106

[Close]

BLAST of Lsi11G001560 vs. TAIR 10
Match: AT3G42830.1 (RING/U-box superfamily protein )

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-30
Identity = 65/88 (73.86%), Postives = 76/88 (86.36%), Query Frame = 0


Query: 1  MATLDSDVPMVPAGDASSSAGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
          MA+L+SDV M   G++SS + P SS+K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1  MASLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61 DLCIECQANQASATSEECTVAWGTFSYS 88
          DLCIEC ANQASATSEECTVAWG  +++
Sbjct: 61 DLCIECLANQASATSEECTVAWGVCNHA 85

The following BLAST results are available for this feature:

BLAST of Lsi11G001560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940X7	3.9e-36	84.09	RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1	[more]
Q9M2B0	2.1e-29	73.86	RING-box protein 1b OS=Arabidopsis thaliana OX=3702 GN=RBX1B PE=2 SV=1	[more]
P62877	1.8e-28	74.36	E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1	[more]
P62878	1.8e-28	74.36	E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1	[more]
Q8QG64	5.2e-28	73.08	RING-box protein 1 OS=Salmo salar OX=8030 GN=rbx1 PE=2 SV=2	[more]

BLAST of Lsi11G001560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I027	3.0e-39	91.95	RING-box protein 1a OS=Cucurbita maxima OX=3661 GN=LOC111467761 PE=4 SV=1	[more]
A0A6J1F460	3.0e-39	91.95	RING-box protein 1a OS=Cucurbita moschata OX=3662 GN=LOC111440096 PE=4 SV=1	[more]
A0A6P4A6G4	3.0e-39	91.95	RING-box protein 1a OS=Ziziphus jujuba OX=326968 GN=LOC107423885 PE=4 SV=1	[more]
A0A6J1DPM4	3.0e-39	91.95	RING-box protein 1a-like OS=Momordica charantia OX=3673 GN=LOC111021926 PE=4 SV=...	[more]
A0A5N5F037	3.9e-39	90.80	RING-box protein 1a OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_02...	[more]

BLAST of Lsi11G001560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889978.1	2.5e-40	100.00	RING-box protein 1a-like isoform X2 [Benincasa hispida]	[more]
XP_038889977.1	7.4e-40	94.25	RING-box protein 1a-like isoform X1 [Benincasa hispida]	[more]
XP_022933228.1	6.2e-39	91.95	RING-box protein 1a [Cucurbita moschata] >XP_022960807.1 RING-box protein 1a [Cu...	[more]
KAF3439695.1	6.2e-39	91.95	hypothetical protein FNV43_RR17973 [Rhamnella rubrinervis]	[more]
XP_015889019.1	6.2e-39	91.95	RING-box protein 1a [Ziziphus jujuba] >XP_022154746.1 RING-box protein 1a-like [...	[more]

BLAST of Lsi11G001560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20570.1	2.8e-37	84.09	RING-box 1	[more]
AT5G20570.2	1.8e-36	89.02	RING-box 1	[more]
AT5G20570.3	4.2e-33	68.87	RING-box 1	[more]
AT3G42830.1	1.5e-30	73.86	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024766	Zinc finger, RING-H2-type	PFAM	PF12678	zf-rbx1	coord: 49..83 e-value: 8.0E-9 score: 35.7
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 18..85 e-value: 1.3E-16 score: 62.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR11210	RING BOX	coord: 1..87
None	No IPR available	PANTHER	PTHR11210:SF51	RING-BOX PROTEIN 1A	coord: 1..87
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 29..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G001560.1	Lsi11G001560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0031461	cullin-RING ubiquitin ligase complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0008270	zinc ion binding