Lsi11G001270 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G001270
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA repair protein XRCC2 homolog isoform X1
Location	chr11: 1430013 .. 1441470 (+)
RNA-Seq Expression	Lsi11G001270
Synteny	Lsi11G001270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAGTAAAAAACTCAAGCCACGTTGAAGTGGCTCGGCAATTTCCCTCGCCCGCCGCTCCCGCCAACAAGGGGGTTGTTATGGCGCTCAGCCAGTGGATCGACGGCGATGAGAGCGCCTTGGAAATGCTTGTCAGAGTTCACAAAGAGCGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGCGCTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACGCAGATCTTAATCCAGGTCCAATTATCAAGTTCAATCTCTCCATTTGAACTTATTGCATGTTTTTTCTTATCTGATTTATCCATCAAATATTGATGGTGATTGACCTCGAAAGCATTTGAGAACAATTTGTGCGCCATTATAAGTAGACCGCTTCTGTCTTACCAAAAAAAAAGTAGACTGCTTCTGTGAGCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAATGGGATCCGCTTTGGAGGCTTGGAGTGCTCAGCTGTGTTCATTGACTTAGATTGTCGTCTTGACATCACAAGGCTGTCCCAAGTTCTGAAGCTTCGAATTTTGGAAGCCATTAGCAATGGTGAGCTATTTGTGCCATTTAATATTGATAAAATGTTAACTTCAAGATTATATTGAGGAACTGCAATTCTGCTTAATGATATCTCGTAATGTCTTGGGTTTTTTTCTAGGATTGTTGCGTCTTTGAATTATTATCCTGTACGTGTGTCTTCTTCTGTTGTACATTTGATATAGAGCTAGTCTTGATGATGTCTATTTTACTTGCCTGTTAAGAAAATAGCGCTCTCCAGTCCCCAGGACAGAAATTTTGACTGCAAATAGGCCCTTTATTGAAGAAATAATATACAACCTTGGAATCATGTTCTCTCCCCTCTCTCCTCCCTTCCCCCCTACCCACCCACTCACCCACCGTGCCATAAACTGCAACCATGATACCTTTCCTTCATCTTTCCAACCTACACCAATAATGTCCACCACGTCTTGGCCGAAACAGAACAAAGCAATCTCGATAGAGCGGAAACCTTTTCGATTGAAGTAGACCCAACCTCACGAGGCACCCACATTCGAATCTCAGAGTCTTCCAAAGACAATGCTTCTTCCTTATAGATTCACTGGAGTACATTGGATGGATCACATATACTCTTAAATCCGTTCTTATTGCACCCTTGAAAGTTGAATCAGAAATTCTTCAAAGAAATTAGGGTAGATGATTAAATAGTTTGGATTGAGAAAATCTCCATAGAGAGTAGCCTTTTGGTTTCTTGCTAGCCTAGCACATGGACACCAATGATATGATCGGGGCGTTCCTCCTTCATCTGTCCTTTTGTGAGAAGGGTCACTTTTTATGACTTGTCAGGGTGTGTGCTATTTTATGAGTTCTTTGGGGAAGCATAATAACAGGGTGTTTAGAGGGTTGGAGAGAGATCCTAGTGATGTTTGGTTCCTTGTTAAATTTCTTGTTTCTCTCTAGGCTTTGATTTAAATTTTTTTTGAAGTTATTCTATATGCACTATTTTGTATAGCTGGAGCCCCTTCCTTTAATGGGGTTTCTTTCTTTTGTGGGCTTCTTTTTTTTATGTCCTTGTTTTCTTGCATTTTTTCTCAAAAAAAGTTGTTTCAGTTACTTTCTCTTTCAAAAGTTCGAGTTTTGGGGTTTCGTTCGTGGAGTATCTGAGTTGGTCTGTTTGTTCTTTTTTGGAGGATGATTTTAGTCAATTTTTTCCTCACATTGGTTCTTATTTTTAGTTTTGTGGTTGCCGTTCAAGTTTTCTTTAGAGCTGAGCTTTGGTTTGATGGCTATTTTTGTTACTTGGCCATTCTCTTTGATTGAAATTGCTTTAAAATCTTGTTTAGTTTCTGGTTCTTTGTTCTTTTTCGCTCCCTTTGGGAGTTTGCATCCTTTGAACAATTTCCTTTTTATTATATCAATGAGAACTTGTTTCTTGTTAAAAAAAAAAAAGATGATGATTTGCTTTTATAACAAGAAAAGAAAGATATTGATTTGAAAAATCACGCTGTTAGAACTAAGGAATCCTTGTGCTATGCTGTCAGCAAACTTTATACTTAAGGTTTATGTGCTAAAATTAGGGCTAATTTTTTCTAGGATCCTCAAACACAGGAGATCGGGAAAATTTTGATGTACTATATGCTACATGCTTGAGAAGATTCTTTTACATCCGTTGCTATGACAGTTTTGAATTTCTTGCCACTCTCAAGGTAAGATTCTTCTTATTTAAAAGAAAGTTAGCCTTCTGCATGAATTTCATTCATACACTTTGTTTAATTTTTTTTTTTCAATAAAAAACAAATTTCGTTGATAAATGGAATAACGAAAGACGAAAGGAGTAAAGTCTCAATCTAGAAGCCAAAGATGTTAAAACTATTTGTAAAAATGTTAAATTTACAGTAACTCCGTAGCTTATACTTTTAGGTTCAATAGTGTTAACATGGTATCAAAGTAGTAGGTCTTGTGTTTGTACTCTTTTAATTTCATGCCCTCTCCTTTGTGGGAGTCAGTTTTTTGGTAAAATTCTAAAAAAGGTGAAGTTCTTTATCGTCCATTCATAGAAGAATCCATACCTTGGATAGGCTCACGAGGAAGTTGCCATCATTGGGCCGTTTTCATTTTATTCTTTGTTGAAGGGTGGAAGAAGAATTGGATAATTTATTTTGGAGCTGTAATTATGTTCACTCAGCTTGGAACTATTTTTTTGGAGTGTTCGACATCCAACTAAGTATAGAGCTTTTAGTGATATGATCAAGGAGTTCCTCCTCCATCCATCGTTTGGGGGAAAGAGAGTTTTTTATGGAAGGCTGGGGTCTATGTTTGTTATGGAGTATTTGGGGGAGACAAATAATAGGATTTTTAGAGGGGTTGAGTGGGATCTGGTTGATGTTTGGTCCCTTGTGAATTTTTAACACTTCTCTTTAGGCGTTGGTAACAAGCTCCTTTTGTAATTATTCACTAGGTCATATTTTGTTAGATTGGAGGCCCTTCCTCTATGGTGCTCGCTTTTGTGACCTTTGTTTTCTTGTATGCCCTTGTATTCTTTTTTTTTTTTCTTCTTTTTTTTACTCTCTCAATGAAAGTTGGTCTTCTATAAAAAAGAAGGGTATAATTACATAGCAACAACGCAACATTCCCTATTGGTCTCTCTTCTCACTTCTTTTGCTACTTGAGCTTTCCCCCTTTCTATTTAAATCTTTGGGAAGCCAAGATCTCAAAGAATGCTAGAAAACACTGAATTACAAAGACTCAATTGATATGACTCTCAAAGTTTAGGGGGATAAATTGATTTTTTTTTCTCTCGAAAAGTTATTAACATGCAGTATAACAGAATGTTAGAAAGCACTGAATTACAAATAGTCAACCTACCTCCATAATTGAAATATCTTTGACTAGCCAATTTTCTTCATAGTTTACTCCATGATGGGCCACCAAAAGAGGCAGTTTTAGGATGACCTCTTAGTGGTAAACCAAGATAAAGGAAAGTAAGGATCCAACCTTACAGCGAAGCCTGGAAGCTAAAAGAGACGGCTTTGTATCTTCTATATTTAACCCTCAAATGGTAGATTTCTTCCAATTGATATTAAAACCTGATAGGCATTCCAAAAACCTGATGGTCGTTAAAAATTTCATTGTTTTTCTTATAAAAAAATTCCATTATTTTGATCAAAATATCCAGCATTTTAAATCTCCTTTTTTATCAGCCGCTGTACTTTTAGTTGGCTCTCCACAATTATGTGCAAACTCCATTGTATAAAATTCGTCTATATAATTCTTTAGAGCTTTTGGATTTCAGACCATGCACCATAAACTTCAAAAAGAAAGAGATGGCCTTGGAGTTGGGTTACATCTACTTGTGATCGACAGGTTTGTGCTAAAAATAATTTGGAACCTTTTGATGTGTCTCCTGCTAGATAAATTTTTTAGTTTCTCCATAGTTTTTGATATATTTCATGAACTTGAAAAGAAAAAGCATTATTATATGTATATTTTCTATCTTCCTCTTCCATGCCATATATGATGCCAAGGACTATAGATTGGTTTTGCTAGTAAGAGTATACTGTATTTGCTTTCATTATTTTTTATTTGTTAATTATTATTAATTTTTTTGGAAGAAATAATTTCATTGATCGAATGAAATAATACAAAAGATATACCCATCCAAAGGAGTTACAAAAGATTTCTCCAATCTGGAAGGAGAGTGTTTAAGCTGTAATTGATAAAACGAATCTTATTTGTACACCAAAAAAAGCATAAAAGATTGCTGTATCCAAAATGTTCTGTGGGTTGCATTCACGATCTTGAAAAATCCTCGAGCTTCTTTCACTCTAAATTCTCCCGAGGATAGCCTTGATAAAAAAGGTCATAGAGTAGCTTTTGTGAACTTGAAAGGGTGATTGTACAAAAGCAAATGGACCCAATCATTTGGGAAGAGCCGGTGGGACAATGCTCCATCCATAGGCAGAGAATATCTCATCCCAAACTTTTCTTGTGTAGGAGCAACGAATAAGGATATGACTGAGTGATTCCCCTGATTCCTGGCAAAGACCACCAATTTGGGGAAAGAGATACTTGAGGACATTTTTTCTGTAGCCTGTCAGAAGTATTGAGGCAAGAGTGGCTGATTTCCCATAATCAAATCTTTGATTTTATTCGGGCAAGGGTCTTTCCAATTCTTCAGGTATATCTCTTTATCGATGTTTTGATTCCCAGATACAAGGCTGTTGAGTAATGATTTTATAGAAAAGTTCCCCCTCTATCCCGACAGTCTGTGAATTGAATGGAGGGAATTTTATTGGTAAGCGCAGCCCATTCCTCAATTTCTTCTTCCTTACCGAAAGTTCAATAGCCATGAGCAATTTGCCGAGTCCCATGCTTCTGCCATAGAAATGTTCTTTGCTCCAGATAATGCATAAAGAAGTGGAAAGGTTAGACTAATGATTGGTCGCATTTCCAAATATCATTCCAAAAAAATGAGGTGTTCTCCCATTTTCAACTTTGTAGTAAATGTTCTCATAGACAAGATGACTGAGAATGGATATTCTGCCATGGGCTCTTGGTTGATGCGTTATAGAGGAAATCAGCTTTCTAGTCAAAAGTGTTGAGTTGAGATCCATATTTGTCTTTAATCACCTTTCTCCATAGGGCATGCTTTTCAAGCTGAAATCTTCATGTCAACTTAGCCAATAGGGATCTGTTTCGTTGTTTTAAATCAGTGATGCCCAGTCCACCTTTATTAATAGAGTTTTTGACTTTTTCCCATATTGAGGAGATGGGAAAGTTCTAGAGGAAATATTAAAAAATCTCTCCATGGTTTCCACCACTATTGAAGATGCCAGTGAGACCCAAATGGTACCGGCGATAGTGAGACTCAAACGATGCTGGTGACAATGAAACTTAGATGATGAAGGCTACAATCGGCGAGCGAAGGTGAACAGTTAGTTGATCCTCGAAGGTAAGACCCACAAACTTGGATTAGGATTTGCATACAAGATTAAGAGCACGCACAACATAGGCTAAAGCCCACGAATGTTGACGATGGTGGTGGAGAGTGATCACACTGGTGAGAATGGCATCACCTGAGGGGGAGATGATGGTCGATGAAAATGATGGCTGGCGGCTAGAGCTATGATAACTCTAATAATATGTTATTTTTGGAGAGTTTTTTTTTTCTTGTTTTAGAAAATGACCCAATAATGGGTAACTATAATTCAAGAGAAATTGTAACTAGGGAAATTATAAAAGGAAAGGATATCTAAAAACAATTAAGAGATAAAAAGACTAATATTTTAGTCTAAATGCAAGTATGCAACAATATTATGCACAAATCTACATACTAAGGTGCACATATATGAGAATTACAATTTTTTTCTTCTGCTAAATGTTCTGTGAAATCGTTTGCTTAATTTTTATTAAATAGTCAGTTGTAAATATCAATGTTGAATTTGGGAATCAGTACTTTCTTCTTTCTGATTAGTATTGGAGCTTATCATTGGGTTGATCGTGTCTCTTCATCCTTGCCTCTGTGGGATCACAACAGGTAATGCCTTTAAATTTTAAATTGTTTAATTCTATATTTATACTTATACACACTTATCAAATCAGAATTCCCACTAAAATTTGGGAAAAGGAGACTATTAGTTGCCACCTATTTTATTTCCTGGTTAGACTTAGGGAGGTTTGGCCTATGGGTTTAGAATTAAGGAGGTTTGATATTTGAAGTCAAACCCATGTTTGGAATAAAATTCCCAGGATTAAGAAACCAAACCCTTGGGTTTGGAATATGTTTTCTAATGAATGTCATAGGTTTGAGAAAAAATTTCCTTCATCTCCTACATCTTACAATGGTCATTTATGGCCATTGACAACAATCGTCGACCGACTTTCATGATAGATCGTTGGCGACCAATCACCTTGACCGTTAGCGATCGATTGCCTTGATCGTTAGCGACCAACCGTCTTCACCGTCTGCAGGCAACCGTCTTGATCGTCGACGACCGACCGTGGTGACTATTAATGATCGACCGTTGTGACTTTTAACGACCAACCATTAGAACCAAACATCGTGACCCTTGATGGTCGGTTTTCGTGACTATCGGGGACCGGCCGACCATTGTTATTACCTTTGGCGACCGACCGACCGTCCTGACAATCGACGAACGACTGATCGTTGTTACCATCGGCGACCAACTAACCGTCTTAATCGTCAACAATCGACCGACTATCGTGCCATCGTCAATTGACCATTGTGATTGTCTTCGATCGATGCATGGTTGCTGGTTATAGTCAACAATTGTTGTCGGCAGGCCGCCTATGATCGTTGGTTGTTGTCAACTTTTTTCTCTCCATTTCCCTTTCTTCCTCATTTACCCTTGGATTTCTCATTCTTTTACCCTTCTTTATTTTCATAAAAATAAATAAAAAACAATGAAAACAATTTCCCTTATGCTAGTCATGGATAGTTGGATGTTCTTCGTTGCTCGCCAACAATTGGCAGTCACAGACGATTTTTTTCTTTCCTCCTCCTTCCTCCCTCTTTTCCCTTCAATTTCTGATTCCCTTCTCCTCTTCATTTCCCCACACCAAAAAAAAAAAAAAGGAAAGAAAGAAAGAAACTAACTGGCAATGAATAAAGAATGCTATTGAATGCAAACCTCAAAGGTAAAATTCATTTCATGACTACAAGAAAGAAGAGATAATTTAGGGATTTAAAGTAAAATTATCTTTTTTATAAAGGGGTTAGTATAGTAAATTTCTAACTTTACTACTTTGTTATCAAAAGATAAATTTGTTATTTCAAAAGAGATATATTAGAAATTTAAAGGCAAAATGAATTTGTTATAAAACTTAATTTCAAAGCTTTCTTACTTTGTTAATAAAAACTATTTTTTTAATAAAAATAACTAAATCATTGACATTTTTGTCATGGAAATTAATGAACCAAATGAATTAATTTAGGATTACAAAAGACAATGCTAATATAAATTTCATTTTTAAATGGATGTATTAAATCTTTTATTTCAAAATTATCATAAAAATTGATCCAAAATACATTACAAGTTATACAGTTCACAAAACAATTACTAAAAAAAGGGGAAAATAAATCAGATTACACAAACCCATGCATTTATGATTCCCAGGCTTCAGAACCCCCTCAAATAAGCCCCCAGACATTTAATTCCCAGGCTTTTGATTTTGAACCTGCGCCCCAAACACCCTCTTAGTTGCCACCTATTTTATTTCCTGGTTAGACTTTTTCGGGCGATCCAATTTAAGTCTTCCATTAGCTTCTTATTGTGAGTTACTGCTAGAGTAGGTTTGTGAGAGAAAGTTTCCAGCTACTTTTTATCTTGTGTGTGTGTGTTTTTTTTTTTTATGTTTTCTTTTTTGAGCATGGATTTCGGCTCCTGACATATTTCTTAGTCCCTCATTTTCCTTGGTTGGTTTTTCTCTTTACAAGTGTGCCTCAACTTGCTCATTCATTTTTACAACAAAATGTGAGGATATTATTTCATTTTAATCTCACTGTCTATTTGAAGAACAAGACACTGGAATGTTGATCAGACATGCTAGGACGTTTGATGGTTTCTACTACTTTGATTAGTCCTTTCACAATGTTTAGCAAATTAGACATCCTAGTCTAGGGCATCTCAGTTTTTCTATCTCGAATACTCTTTTTCTTGAAAAGGATACCAAGACTTTTCATTAAGTGAATGAAAAGAGATTGATGCTCAAAGATACAAGATACAAGATGCTAAAAGCAAAAATGAAACATCAAACCTTAGAAGCATAAAATTTCCGAAGCATAACAAAAGAACGTACATAACAAAGGAAACATAGAAAAAGATAAAATAGCACAAAACCAACAACTTTAAGAAGATTCTATAATAGTGTTCCATCTGCGGTTGTCTTGAGTTGAAAATCTTTACTCGAACCGCAAATACTTATTTTCAAATCAACTTTTCTGGTTAAGGGCTTAAACTCCCTTTCCTTGGCAGGAGATGCCTTACCTCCCTGGCATATAAATTTTGTAGGGCCTTTTTCTTTTTAATGACATGATTGTTTTCTTTATATTGTTTCTTATTATAAAGAAAAAAAAAAGAAGGAAAAATGTGTTTCAACAATGTAATTTCTTACTGCAAGCCACTGGTAATTTTTTACTCTCATGCATAAATTTGTGATAATCATCCAAAAAGAAAACGTGTTTCAACAATGTACAATTCTATTCCCAATGTTATGACAATTTAAGATATTTACTCTCTGTAGGAAAGGCTTTTCTCTTGCAAATGTGCTAGAAGCTGCAGTAGAAGAGATTAGAAAGCTTTTGCTGGTGCATCCGAGTATTGTTATTGCTTCAAAAGCAACCATTTTTGGGGATAGATCTTCTGACATAGTTAGACGGTGAGTTTAAAGCCGAAAGGGACTTATTTTCTCCTCTGTGAAACAAAAAATTGCATAAAAGAATTATGTTTCTTGTACTTTACTGCCTAATTCAACTGGTATACTTTACATTGGTGATGTGTGCCTAGTCTTAATCCTTTCATTTTCATATTTGAGATATGAATGCTCACCCTGATCCATAGACTTGCATGCATCTTTCACATGGTCAAGTACTTTGACAACTTGTTACAATTCTTGAAGACTATTATGCTTAAAATTGCTTGAAGACTTGGTTTTTTAGATTTGGAATTCTAAGATATGAAGCTACGTATCACCAATTCTTTTGTCATTCTTGTCCATGTTTTGGTTGCTTCATTTTCATTCTCTTTTCTTGGATAGGGAACCACTACCTTCACCATTTCTTCCATCAAGAATAAAGAGAATGATGTTATGTTAGCGGGACCTTGATTTTCAAATTGATCAACTTTTTAGGTATTGATATGAGACAAAAATTGTAAGTTTCAGTTTAAATGTGCTAGGAGCATTAGAGAGGCCAAATGGCATAACCAATCATTTAAGCAAGCAGAACCAAAACGAACAAACTGTGAAGCGGAGGATTTCAGGACTTTTTAATCCTAACAAGACAAAAATCTAAAAATAGATCTTCCACTGCAATAGACCAGAAAATCTTTAATTCCAAAGCCAACGAAAGACCAGCAAGTAACTGGAAAATATTTCCTAGACTCTGTTGAAAAGAACCCACTCAACGAGAGAAAACCCAAGATCTCTTGAGACCAACTTCTAATATTACAAAACTATTTGGTTACCACTTCCAAACTTGAAACTGCTAGAGAATCCACTTGGTGCTACAAGTTTGAGTTTTTTTTGGTTTTTTTTTTTTATATTCGTGAGTGTTTGGGCTAGCCACAAGTTTGAGATATTAAGCCAAGGGCAGAATTTACTGATGAAGATGATTAGAAACTCCTTTGATGAACTCAAATACTAACAAATCATCTTCAACCCACAAACAAAAAAACCACCTGATTTTCTAATAGAAGACAAATCAATCCAGCTTAATCTTTAGAACTCCACAGGGATTGGAGAAAAAACAAAACAAAACAAAATCAACACAAAAAGCTTCGTGATGTGTCTAAAAAAGAAGATTACCATTTGACTGGTCCAACTTTTTCTCCATTCTCTCTCCTCTTGTCCTTTCCTATTCCTAACCCCTATAAAACCGTTCTACTTTCTGGTCATCCATGGCCATTGTTGTTTCAATATTTATGTTTCTATGCTTCTTTATATGATATGGCATACACTAACCCTGACAAATTTGTCAGTGAAAAATCTTTATCAGACTCAGAATTGAGACATGGGAAACCCGATGGTGGACTAGTTTTGTACCGAGAGTATATGCCTTCTGCATGGCAGGTAATCTATGTAATTGTCTCTGTCTATATTTTCTTTTGTGAAAGCCATAACTTACGTATTTAGAACTTAGAAGTATTGTCAAATTGGAAGGACCATAGCTTGTTCAATTGTGTTTTTGAGTTTTACAGTGATGTCAAGTTGAAAGTTTCACCTAAAAATAGAAAGTTACACCTAAAAATAATGTCTCTCGATCACATTAACCATGAAGCAACTTAAAGTATCGCCTGAATGAAGAGGGAGACATTTAAGAAGTTAAATAACATCATAGTAGTAATTTGTAAAGACAACATAGCCATATAATATACGAACATAAAGCAAAAACGAAAAGACTATGACGAACTTGGGGAGTGTGACTTTTATTTGTTTATTATTTTTTTTGAAGTATTTTCTTCTGGCCACCATATCAGATAGTCAAAAACAAAATAATTTAGATGTTATATATATATATATATATACATATATATAAACATACCCCAATGTATCCATGTCTTACCTTTTTTTTTAAATTGACTTGTCCCTGTATATGTGTCAGTGTCGTGTCCATGCAGATTACAACTGTAAAAATATTTTCATTTTCAAGCACTATCATTAGGATCTTTCTTAAATTATGTACAAATAATGGAAAACTAGTCGTGAAATTTCAGTTAAAATACCATTCTGTATGTAAGTCTTATTCCATTTTAGTCTAGTTTCAAAGTAGAAGGTCCGGAATGATATTTTAACCTTAAATTTATTGGTGAAAGAGACTCATTTGTCTGGGTTTTTGCAGTCTTTTGTCACGCACAGAGTTTTTGTTCGAGGCTCAGGTCTGATTACATATTATGCTTAGAAGTGGAATATGATTTGGTCCACTTTCTGTATATTCAGTCATTAATCTGATACTTTTTGTTGCCTTGCAGACGAACATCTTACAGTGAGCAGTTGTGAGCATCAATCGACATATTTTTCTGAATGGCTGCTACCATCCCTAGGTTTTCTCGATAAATTTATTGTGAAAAATGTGAGAAACCAAGCCATTTTGCTTAAGCTACTCGTAAATATTGAAGTACCATGAATTAACATTAACATGTACTCTTTTTCATAAATGTTGAAGTACCATGAATTAACATTAA

mRNA sequence

AAAAAAGTAAAAAACTCAAGCCACGTTGAAGTGGCTCGGCAATTTCCCTCGCCCGCCGCTCCCGCCAACAAGGGGGTTGTTATGGCGCTCAGCCAGTGGATCGACGGCGATGAGAGCGCCTTGGAAATGCTTGTCAGAGTTCACAAAGAGCGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGCGCTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACGCAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAATGGGATCCGCTTTGGAGGCTTGGAGTGCTCAGCTGTGTTCATTGACTTAGATTGTCGTCTTGACATCACAAGGCTGTCCCAAGTTCTGAAGCTTCGAATTTTGGAAGCCATTAGCAATGGAGATCGGGAAAATTTTGATGTACTATATGCTACATGCTTGAGAAGATTCTTTTACATCCGTTGCTATGACAGTTTTGAATTTCTTGCCACTCTCAAGACCATGCACCATAAACTTCAAAAAGAAAGAGATGGCCTTGGAGTTGGGTTACATCTACTTGTGATCGACAGGAAAGGCTTTTCTCTTGCAAATGTGCTAGAAGCTGCAGTAGAAGAGATTAGAAAGCTTTTGCTGGTGCATCCGAGTATTGTTATTGCTTCAAAAGCAACCATTTTTGGGGATAGATCTTCTGACATAGTTAGACGTGAAAAATCTTTATCAGACTCAGAATTGAGACATGGGAAACCCGATGGTGGACTAGTTTTGTACCGAGAGTATATGCCTTCTGCATGGCAGTCTTTTGTCACGCACAGAGTTTTTGTTCGAGGCTCAGACGAACATCTTACAGTGAGCAGTTGTGAGCATCAATCGACATATTTTTCTGAATGGCTGCTACCATCCCTAGGTTTTCTCGATAAATTTATTGTGAAAAATGTGAGAAACCAAGCCATTTTGCTTAAGCTACTCGTAAATATTGAAGTACCATGAATTAACATTAACATGTACTCTTTTTCATAAATGTTGAAGTACCATGAATTAACATTAA

Coding sequence (CDS)

ATGGCGCTCAGCCAGTGGATCGACGGCGATGAGAGCGCCTTGGAAATGCTTGTCAGAGTTCACAAAGAGCGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGCGCTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACGCAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAATGGGATCCGCTTTGGAGGCTTGGAGTGCTCAGCTGTGTTCATTGACTTAGATTGTCGTCTTGACATCACAAGGCTGTCCCAAGTTCTGAAGCTTCGAATTTTGGAAGCCATTAGCAATGGAGATCGGGAAAATTTTGATGTACTATATGCTACATGCTTGAGAAGATTCTTTTACATCCGTTGCTATGACAGTTTTGAATTTCTTGCCACTCTCAAGACCATGCACCATAAACTTCAAAAAGAAAGAGATGGCCTTGGAGTTGGGTTACATCTACTTGTGATCGACAGGAAAGGCTTTTCTCTTGCAAATGTGCTAGAAGCTGCAGTAGAAGAGATTAGAAAGCTTTTGCTGGTGCATCCGAGTATTGTTATTGCTTCAAAAGCAACCATTTTTGGGGATAGATCTTCTGACATAGTTAGACGTGAAAAATCTTTATCAGACTCAGAATTGAGACATGGGAAACCCGATGGTGGACTAGTTTTGTACCGAGAGTATATGCCTTCTGCATGGCAGTCTTTTGTCACGCACAGAGTTTTTGTTCGAGGCTCAGACGAACATCTTACAGTGAGCAGTTGTGAGCATCAATCGACATATTTTTCTGAATGGCTGCTACCATCCCTAGGTTTTCTCGATAAATTTATTGTGAAAAATGTGAGAAACCAAGCCATTTTGCTTAAGCTACTCGTAAATATTGAAGTACCATGA

Protein sequence

MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRILEAISNGDRENFDVLYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVIDRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRGSDEHLTVSSCEHQSTYFSEWLLPSLGFLDKFIVKNVRNQAILLKLLVNIEVP

Homology

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BLAST of Lsi11G001270 vs. ExPASy Swiss-Prot
Match: Q682D3 (DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC2 PE=2 SV=2)

HSP 1 Score: 260.0 bits (663), Expect = 3.4e-68
Identity = 147/349 (42.12%), Postives = 213/349 (61.03%), Query Frame = 0


Query: 6   WIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCI 65
           WI GDE+A +ML RV K+R  L++PPLHRVPLRAGNVVE+ G S SAKTQILIQAA++CI
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAISCI 68

Query: 66  LPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRILEA--ISNG-----DRENF-- 125
           LPK WNGI +GGL    +F+DLDCR D+ RLSQ+LK R+L+A  + NG     +  N   
Sbjct: 69  LPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNGAWWQLEESNVKS 128

Query: 126 -------------DVLYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKER---------- 185
                        + LYA+C++RF Y+RCYDS E L++LKT+H+++Q++           
Sbjct: 129 CKSAEEKTKTVFDEELYASCMKRFLYVRCYDSLELLSSLKTLHYRIQQQEACGSQVGVLM 188

Query: 186 ----------DGLGVGLHLLVIDRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFG 245
                     D L   L L   +RK  SL NV+E  V+E++KLLLVH  +V+A+K TI+ 
Sbjct: 189 IDSIGAFHWTDRLSSSLALETHNRKSLSLTNVVETIVQELKKLLLVHSLVVLATKGTIYE 248

Query: 246 DR-SSDIVRREKSLSDSELRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRGSDEHLTVSS 305
           ++  ++   R+ S +D    +         +RE+MPS+WQ+FVTH++ +R S ++ ++ +
Sbjct: 249 EKYPANENNRKVSSNDHFSGNVASKAQQPPFREFMPSSWQAFVTHKIIIRKSADYQSLQT 308

[Close]

BLAST of Lsi11G001270 vs. ExPASy Swiss-Prot
Match: Q9CX47 (DNA repair protein XRCC2 OS=Mus musculus OX=10090 GN=Xrcc2 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.8e-13
Identity = 62/227 (27.31%), Postives = 96/227 (42.29%), Query Frame = 0


Query: 40  GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQV 99
           G++ E  GP G+ KT++L      CILPK       GGL+   +FID D   D+ RL  V
Sbjct: 41  GDIFEFHGPEGTGKTEMLYHLTARCILPKS-----EGGLQIEVLFIDTDYHFDMLRLVTV 100

Query: 100 LKLRILEAISNGDRENFDVLYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVG 159
           L+ R+ ++     +         CL R F   C  S + L TL ++   L          
Sbjct: 101 LEHRLSQSSEEAMK--------LCLARLFLAYCSSSMQLLLTLHSLEALLCSR-----PS 160

Query: 160 LHLLVIDR----------KGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDI 219
           L LL++D            G     + E+ +++  +LL     +V   +  +F    S +
Sbjct: 161 LCLLIVDSLSSFYWIDRVSGGESVALQESTLQKCSQLL---ERLVTEYRLLLFATTQS-L 220

Query: 220 VRREKSLSDSELRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRGSDE 257
           +++    +D       P  G + YR Y+  AWQ  V HRV     DE
Sbjct: 221 MQKGSDSADGPSSSKHPCDGDMGYRAYLCKAWQRVVKHRVIFSRDDE 245

[Close]

BLAST of Lsi11G001270 vs. ExPASy Swiss-Prot
Match: O43543 (DNA repair protein XRCC2 OS=Homo sapiens OX=9606 GN=XRCC2 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-13
Identity = 76/265 (28.68%), Postives = 116/265 (43.77%), Query Frame = 0


Query: 11  ESALEMLVRVHKERTSL--VVPPL---HRVPLRAGNVVELVGPSGSAKTQILIQAAVNCI 70
           ES  E+L R+ + R+SL  + P L      P+  G+++E  GP G+ KT++L      CI
Sbjct: 9   ESGTELLARL-EGRSSLKEIEPNLFADEDSPVH-GDILEFHGPEGTGKTEMLYHLTARCI 68

Query: 71  LPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRILEAISNGDRENFDVLYATCLR 130
           LPK       GGLE   +FID D   D+ RL  +L+ R+         ++ + +   CL 
Sbjct: 69  LPKS-----EGGLEVEVLFIDTDYHFDMLRLVTILEHRL--------SQSSEEIIKYCLG 128

Query: 131 RFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVIDR----------KGFSLANV 190
           RFF + C  S   L TL ++              L LL++D            G    N+
Sbjct: 129 RFFLVYCSSSTHLLLTLYSLESMFCSH-----PSLCLLILDSLSAFYWIDRVNGGESVNL 188

Query: 191 LEAAVEE----IRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRHGKPDGGLV 250
            E+ + +    + KL+  +  ++ A+  TI    SS     E S +   L     D    
Sbjct: 189 QESTLRKCSQCLEKLVNDYRLVLFATTQTIMQKASSS--SEEPSHASRRLCDVDID---- 246

Query: 251 LYREYMPSAWQSFVTHRVFVRGSDE 257
            YR Y+  AWQ  V HR+F    D+
Sbjct: 249 -YRPYLCKAWQQLVKHRMFFSKQDD 246

[Close]

BLAST of Lsi11G001270 vs. ExPASy TrEMBL
Match: A0A1S3C3R7 (DNA repair protein XRCC2 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496670 PE=4 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 2.2e-147
Identity = 276/331 (83.38%), Postives = 285/331 (86.10%), Query Frame = 0


Query: 1   MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQA 60
           M LSQWIDGDESA EML RV KERTSLVVPPLHRVPLR GNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRILEAISN-----GDREN 120
           AVNCILPKEWNGI +GGL CSAVFIDLDCRLDITRL QVLKLRILEAISN     GD EN
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSLNTGDGEN 120

Query: 121 FDVLYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVID--------- 180
           FD LYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVID         
Sbjct: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVIDSIGAYHWVD 180

Query: 181 ------------RKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
                       RKGFSLANVLEAAVEE+RKLLLVHPSIVIAS+ATIFGDRSS++VRR+K
Sbjct: 181 RISSSLPPWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASRATIFGDRSSNVVRRDK 240

Query: 241 SLSDSELRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRGSDEHLTVSSCEHQSTYFSEWL 300
           SLS+SELRHGKPDGGL LYREYMPSAWQSFVTHRVFVR SDEHL  SSCEHQ TY SEWL
Sbjct: 241 SLSESELRHGKPDGGLGLYREYMPSAWQSFVTHRVFVRDSDEHLAFSSCEHQPTYSSEWL 300

Query: 301 LPSLGFLDKFIVKNVRNQAILLKLLVNIEVP 306
           LPSLGF+DKFIV NVRNQAI LKLLV  +VP
Sbjct: 301 LPSLGFVDKFIVTNVRNQAIFLKLLVYNKVP 331

[Close]

BLAST of Lsi11G001270 vs. ExPASy TrEMBL
Match: A0A1S3C491 (DNA repair protein XRCC2 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496670 PE=4 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 3.1e-141
Identity = 263/314 (83.76%), Postives = 271/314 (86.31%), Query Frame = 0


Query: 1   MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQA 60
           M LSQWIDGDESA EML RV KERTSLVVPPLHRVPLR GNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRILEAISN-----GDREN 120
           AVNCILPKEWNGI +GGL CSAVFIDLDCRLDITRL QVLKLRILEAISN     GD EN
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSLNTGDGEN 120

Query: 121 FDVLYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVID--------- 180
           FD LYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVID         
Sbjct: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVIDSIGAYHWVD 180

Query: 181 ------------RKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
                       RKGFSLANVLEAAVEE+RKLLLVHPSIVIAS+ATIFGDRSS++VRR+K
Sbjct: 181 RISSSLPPWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASRATIFGDRSSNVVRRDK 240

Query: 241 SLSDSELRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRGSDEHLTVSSCEHQSTYFSEWL 289
           SLS+SELRHGKPDGGL LYREYMPSAWQSFVTHRVFVR SDEHL  SSCEHQ TY SEWL
Sbjct: 241 SLSESELRHGKPDGGLGLYREYMPSAWQSFVTHRVFVRDSDEHLAFSSCEHQPTYSSEWL 300

[Close]

BLAST of Lsi11G001270 vs. ExPASy TrEMBL
Match: A0A6J1GZX5 (DNA repair protein XRCC2 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458674 PE=4 SV=1)

HSP 1 Score: 506.9 bits (1304), Expect = 5.8e-140
Identity = 255/309 (82.52%), Postives = 268/309 (86.73%), Query Frame = 0


Query: 1   MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQA 60
           MAL QWIDGDE+A EML RVHKERTSL+VPPLHRVPL  GNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRILEAISNGDRENFDVLY 120
           AVNCILPKEWNGIR+GGLECS VFIDLDCRLDI+RLSQVLKLRILE   +GD  NFD LY
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSGDWGNFDALY 120

Query: 121 ATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVID-------------- 180
            TCLRRFFYIRCYDSFEFLATLKTMHHKLQKERD LG+ LHLL+ID              
Sbjct: 121 TTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSS 180

Query: 181 -------RKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDS 240
                  RKGFSLAN+LEAAVEE++KLLLVHPSIVIASKATIFGDRSSDIVRREKSLS++
Sbjct: 181 LPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSET 240

Query: 241 ELRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRGSDEHLTVSSCEHQSTYFSEWLLPSLG 289
           E RHGK DGG VLYREYMPSAWQSFVTHRVFVRGSDE+LTVSSCEHQS YFSEWLLPSLG
Sbjct: 241 ESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLG 300

[Close]

BLAST of Lsi11G001270 vs. ExPASy TrEMBL
Match: A0A6J1KC54 (DNA repair protein XRCC2 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492982 PE=4 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 4.9e-139
Identity = 256/309 (82.85%), Postives = 266/309 (86.08%), Query Frame = 0


Query: 1   MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQA 60
           MAL QWIDGDESA EML RV KERTSL+VPPLHRVPL  GNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDESAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRILEAISNGDRENFDVLY 120
           AVNCILPKEWNGIR+GGLECS VFIDLDCRLDI+RLSQVLKLRILE   NGD  NFD LY
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGNGDWGNFDALY 120

Query: 121 ATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVID-------------- 180
            TCLRRFFYIRCYDSFEFLATLKTMHHKLQKERD LG+GL LL+ID              
Sbjct: 121 TTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIGLRLLMIDSIGAYHWVDRVSSS 180

Query: 181 -------RKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDS 240
                  RKGFSLAN+LEAAVEEI+KLLLVHPSIVIASKATIFGDRSSDIVRREKS S++
Sbjct: 181 LPLWGYNRKGFSLANMLEAAVEEIKKLLLVHPSIVIASKATIFGDRSSDIVRREKSSSET 240

Query: 241 ELRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRGSDEHLTVSSCEHQSTYFSEWLLPSLG 289
           E RHGK DGG VLYREYMPSAWQSFVTHRVFVRGSDE+LTVSSCEHQS YFSEWLLPSLG
Sbjct: 241 ESRHGKSDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLG 300

[Close]

BLAST of Lsi11G001270 vs. ExPASy TrEMBL
Match: A0A0A0KMH0 (RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G289900 PE=4 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 1.2e-137
Identity = 257/314 (81.85%), Postives = 267/314 (85.03%), Query Frame = 0


Query: 1   MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQA 60
           MAL QWIDGDESA EML RV KERTSLVVPPLHRVPLR GNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRILEAISN-----GDREN 120
           AVNCILPKEW+GI +GGL C AVFIDLDCRLDITRL QVLKLRI+EA SN     GD EN
Sbjct: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120

Query: 121 FDVLYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVID--------- 180
           FD LYATCLRRF YIRCYDSFEFLATLKTMHHKLQKERD LGVGLHLLVID         
Sbjct: 121 FDALYATCLRRFSYIRCYDSFEFLATLKTMHHKLQKERDSLGVGLHLLVIDSIGAYHWVD 180

Query: 181 ------------RKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
                       RKGFSLANVLEAAVEE+RKLLLVHPSIVIASKATIFGDRSSD V+R+K
Sbjct: 181 RISSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDK 240

Query: 241 SLSDSELRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRGSDEHLTVSSCEHQSTYFSEWL 289
           +LS+SEL+HGKPDGGL LYREYMPSAWQSFVTHRVFVR SDEHL +SSCEHQ TY SEWL
Sbjct: 241 TLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWL 300

[Close]

BLAST of Lsi11G001270 vs. NCBI nr
Match: XP_008456835.1 (PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 531.6 bits (1368), Expect = 4.6e-147
Identity = 276/331 (83.38%), Postives = 285/331 (86.10%), Query Frame = 0


Query: 1   MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQA 60
           M LSQWIDGDESA EML RV KERTSLVVPPLHRVPLR GNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRILEAISN-----GDREN 120
           AVNCILPKEWNGI +GGL CSAVFIDLDCRLDITRL QVLKLRILEAISN     GD EN
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSLNTGDGEN 120

Query: 121 FDVLYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVID--------- 180
           FD LYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVID         
Sbjct: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVIDSIGAYHWVD 180

Query: 181 ------------RKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
                       RKGFSLANVLEAAVEE+RKLLLVHPSIVIAS+ATIFGDRSS++VRR+K
Sbjct: 181 RISSSLPPWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASRATIFGDRSSNVVRRDK 240

Query: 241 SLSDSELRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRGSDEHLTVSSCEHQSTYFSEWL 300
           SLS+SELRHGKPDGGL LYREYMPSAWQSFVTHRVFVR SDEHL  SSCEHQ TY SEWL
Sbjct: 241 SLSESELRHGKPDGGLGLYREYMPSAWQSFVTHRVFVRDSDEHLAFSSCEHQPTYSSEWL 300

Query: 301 LPSLGFLDKFIVKNVRNQAILLKLLVNIEVP 306
           LPSLGF+DKFIV NVRNQAI LKLLV  +VP
Sbjct: 301 LPSLGFVDKFIVTNVRNQAIFLKLLVYNKVP 331

[Close]

BLAST of Lsi11G001270 vs. NCBI nr
Match: KAE8648111.1 (hypothetical protein Csa_004719 [Cucumis sativus])

HSP 1 Score: 518.8 bits (1335), Expect = 3.1e-143
Identity = 270/331 (81.57%), Postives = 281/331 (84.89%), Query Frame = 0


Query: 1   MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQA 60
           MAL QWIDGDESA EML RV KERTSLVVPPLHRVPLR GNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRILEAISN-----GDREN 120
           AVNCILPKEW+GI +GGL C AVFIDLDCRLDITRL QVLKLRI+EA SN     GD EN
Sbjct: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120

Query: 121 FDVLYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVID--------- 180
           FD LYATCLRRF YIRCYDSFEFLATLKTMHHKLQKERD LGVGLHLLVID         
Sbjct: 121 FDALYATCLRRFSYIRCYDSFEFLATLKTMHHKLQKERDSLGVGLHLLVIDSIGAYHWVD 180

Query: 181 ------------RKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
                       RKGFSLANVLEAAVEE+RKLLLVHPSIVIASKATIFGDRSSD V+R+K
Sbjct: 181 RISSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDK 240

Query: 241 SLSDSELRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRGSDEHLTVSSCEHQSTYFSEWL 300
           +LS+SEL+HGKPDGGL LYREYMPSAWQSFVTHRVFVR SDEHL +SSCEHQ TY SEWL
Sbjct: 241 TLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWL 300

Query: 301 LPSLGFLDKFIVKNVRNQAILLKLLVNIEVP 306
           LPSLGFLDKFIV NVRNQAI LKLLV  +VP
Sbjct: 301 LPSLGFLDKFIVTNVRNQAISLKLLVYNKVP 331

[Close]

BLAST of Lsi11G001270 vs. NCBI nr
Match: XP_038891841.1 (DNA repair protein XRCC2 homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 513.5 bits (1321), Expect = 1.3e-141
Identity = 265/314 (84.39%), Postives = 273/314 (86.94%), Query Frame = 0


Query: 1   MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQA 60
           MALSQWIDGDESA EML RV KERTSLVVPPLHRVPLR GNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALSQWIDGDESASEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRILEAISN-----GDREN 120
           AVNCILPKEWNGIR+GGLECS VFIDLDCRLDITRL QVLKLRILEAISN     GD+EN
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLYQVLKLRILEAISNGSSSTGDQEN 120

Query: 121 FDVLYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVID--------- 180
           FD L+ATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVID         
Sbjct: 121 FDALHATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVIDSIGAYHWVD 180

Query: 181 ------------RKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
                       RKGFSLANVLEAAVEE+RKLLLVHPSIVIASKATIFG+RSSDIVRRE+
Sbjct: 181 RVSSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGNRSSDIVRREQ 240

Query: 241 SLSDSELRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRGSDEHLTVSSCEHQSTYFSEWL 289
           SLS+SE RHGK DGG VLYREYMPSAWQSFVTHRVFVR SDEH T SSC+ Q TYFSEWL
Sbjct: 241 SLSESESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRDSDEHPTGSSCDRQPTYFSEWL 300

[Close]

BLAST of Lsi11G001270 vs. NCBI nr
Match: XP_031741381.1 (DNA repair protein XRCC2 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 511.5 bits (1316), Expect = 4.9e-141
Identity = 257/293 (87.71%), Postives = 267/293 (91.13%), Query Frame = 0


Query: 1   MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQA 60
           MAL QWIDGDESA EML RV KERTSLVVPPLHRVPLR GNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRILEAISN-----GDREN 120
           AVNCILPKEW+GI +GGL C AVFIDLDCRLDITRL QVLKLRI+EA SN     GD EN
Sbjct: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120

Query: 121 FDVLYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVIDRKGFSLANV 180
           FD LYATCLRRF YIRCYDSFEFLATLKTMHHKLQKERD LGVGLHLLVIDRKGFSLANV
Sbjct: 121 FDALYATCLRRFSYIRCYDSFEFLATLKTMHHKLQKERDSLGVGLHLLVIDRKGFSLANV 180

Query: 181 LEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSDSELRHGKPDGGLVLYRE 240
           LEAAVEE+RKLLLVHPSIVIASKATIFGDRSSD V+R+K+LS+SEL+HGKPDGGL LYRE
Sbjct: 181 LEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDKTLSESELKHGKPDGGLGLYRE 240

Query: 241 YMPSAWQSFVTHRVFVRGSDEHLTVSSCEHQSTYFSEWLLPSLGFLDKFIVKN 289
           YMPSAWQSFVTHRVFVR SDEHL +SSCEHQ TY SEWLLPSLGFLDKFIV N
Sbjct: 241 YMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWLLPSLGFLDKFIVTN 293

[Close]

BLAST of Lsi11G001270 vs. NCBI nr
Match: XP_008456836.1 (PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 511.1 bits (1315), Expect = 6.4e-141
Identity = 263/314 (83.76%), Postives = 271/314 (86.31%), Query Frame = 0


Query: 1   MALSQWIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQA 60
           M LSQWIDGDESA EML RV KERTSLVVPPLHRVPLR GNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRILEAISN-----GDREN 120
           AVNCILPKEWNGI +GGL CSAVFIDLDCRLDITRL QVLKLRILEAISN     GD EN
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSLNTGDGEN 120

Query: 121 FDVLYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVID--------- 180
           FD LYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVID         
Sbjct: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVIDSIGAYHWVD 180

Query: 181 ------------RKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
                       RKGFSLANVLEAAVEE+RKLLLVHPSIVIAS+ATIFGDRSS++VRR+K
Sbjct: 181 RISSSLPPWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASRATIFGDRSSNVVRRDK 240

Query: 241 SLSDSELRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRGSDEHLTVSSCEHQSTYFSEWL 289
           SLS+SELRHGKPDGGL LYREYMPSAWQSFVTHRVFVR SDEHL  SSCEHQ TY SEWL
Sbjct: 241 SLSESELRHGKPDGGLGLYREYMPSAWQSFVTHRVFVRDSDEHLAFSSCEHQPTYSSEWL 300

[Close]

BLAST of Lsi11G001270 vs. TAIR 10
Match: AT5G64520.1 (homolog of X-ray repair cross complementing 2 (XRCC2) )

HSP 1 Score: 260.0 bits (663), Expect = 2.4e-69
Identity = 147/349 (42.12%), Postives = 213/349 (61.03%), Query Frame = 0


Query: 6   WIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCI 65
           WI GDE+A +ML RV K+R  L++PPLHRVPLRAGNVVE+ G S SAKTQILIQAA++CI
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAISCI 68

Query: 66  LPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRILEA--ISNG-----DRENF-- 125
           LPK WNGI +GGL    +F+DLDCR D+ RLSQ+LK R+L+A  + NG     +  N   
Sbjct: 69  LPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNGAWWQLEESNVKS 128

Query: 126 -------------DVLYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKER---------- 185
                        + LYA+C++RF Y+RCYDS E L++LKT+H+++Q++           
Sbjct: 129 CKSAEEKTKTVFDEELYASCMKRFLYVRCYDSLELLSSLKTLHYRIQQQEACGSQVGVLM 188

Query: 186 ----------DGLGVGLHLLVIDRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFG 245
                     D L   L L   +RK  SL NV+E  V+E++KLLLVH  +V+A+K TI+ 
Sbjct: 189 IDSIGAFHWTDRLSSSLALETHNRKSLSLTNVVETIVQELKKLLLVHSLVVLATKGTIYE 248

Query: 246 DR-SSDIVRREKSLSDSELRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRGSDEHLTVSS 305
           ++  ++   R+ S +D    +         +RE+MPS+WQ+FVTH++ +R S ++ ++ +
Sbjct: 249 EKYPANENNRKVSSNDHFSGNVASKAQQPPFREFMPSSWQAFVTHKIIIRKSADYQSLQT 308

[Close]

BLAST of Lsi11G001270 vs. TAIR 10
Match: AT5G64520.2 (homolog of X-ray repair cross complementing 2 (XRCC2) )

HSP 1 Score: 258.8 bits (660), Expect = 5.3e-69
Identity = 142/328 (43.29%), Postives = 205/328 (62.50%), Query Frame = 0


Query: 6   WIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCI 65
           WI GDE+A +ML RV K+R  L++PPLHRVPLRAGNVVE+ G S SAKTQILIQAA++CI
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAISCI 68

Query: 66  LPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRILEA--ISNG-----DRENF-- 125
           LPK WNGI +GGL    +F+DLDCR D+ RLSQ+LK R+L+A  + NG     +  N   
Sbjct: 69  LPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNGAWWQLEESNVKS 128

Query: 126 -------------DVLYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKER---------- 185
                        + LYA+C++RF Y+RCYDS E L++LKT+H+++Q++           
Sbjct: 129 CKSAEEKTKTVFDEELYASCMKRFLYVRCYDSLELLSSLKTLHYRIQQQEACGSQVGVLM 188

Query: 186 ----------DGLGVGLHLLVIDRKGFSLANVLEAAVEEIRKLLLVHPSIVIASKATIFG 245
                     D L   L L   +RK  SL NV+E  V+E++KLLLVH  +V+A+K TI+ 
Sbjct: 189 IDSIGAFHWTDRLSSSLALETHNRKSLSLTNVVETIVQELKKLLLVHSLVVLATKGTIYE 248

Query: 246 DR-SSDIVRREKSLSDSELRHGKPDGGLVLYREYMPSAWQSFVTHRVFVRGSDEHLTVSS 290
           ++  ++   R+ S +D    +         +RE+MPS+WQ+FVTH++ +R S ++ ++ +
Sbjct: 249 EKYPANENNRKVSSNDHFSGNVASKAQQPPFREFMPSSWQAFVTHKIIIRKSADYQSLQT 308

[Close]

BLAST of Lsi11G001270 vs. TAIR 10
Match: AT5G64520.3 (homolog of X-ray repair cross complementing 2 (XRCC2) )

HSP 1 Score: 208.8 bits (530), Expect = 6.3e-54
Identity = 115/248 (46.37%), Postives = 156/248 (62.90%), Query Frame = 0


Query: 6   WIDGDESALEMLVRVHKERTSLVVPPLHRVPLRAGNVVELVGPSGSAKTQILIQAAVNCI 65
           WI GDE+A +ML RV K+R  L++PPLHRVPLRAGNVVE+ G S SAKTQILIQAA++CI
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAISCI 68

Query: 66  LPKEWNGIRFGGLECSAVFIDLDCRLDITRLSQVLKLRILEA--ISNG-----DRENF-- 125
           LPK WNGI +GGL    +F+DLDCR D+ RLSQ+LK R+L+A  + NG     +  N   
Sbjct: 69  LPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNGAWWQLEESNVKS 128

Query: 126 -------------DVLYATCLRRFFYIRCYDSFEFLATLK------TMHHKLQKER---- 185
                        + LYA+C++RF Y+RCYDS E L++LK      T+H+++Q++     
Sbjct: 129 CKSAEEKTKTVFDEELYASCMKRFLYVRCYDSLELLSSLKYFTVLQTLHYRIQQQEACGS 188

Query: 186 ----------------DGLGVGLHLLVIDRKGFSLANVLEAAVEEIRKLLLVHPSIVIAS 206
                           D L   L L   +RK  SL NV+E  V+E++KLLLVH  +V+A+
Sbjct: 189 QVGVLMIDSIGAFHWTDRLSSSLALETHNRKSLSLTNVVETIVQELKKLLLVHSLVVLAT 248

The following BLAST results are available for this feature:

BLAST of Lsi11G001270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q682D3	3.4e-68	42.12	DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC2 PE=2 S...	[more]
Q9CX47	1.8e-13	27.31	DNA repair protein XRCC2 OS=Mus musculus OX=10090 GN=Xrcc2 PE=2 SV=1	[more]
O43543	3.1e-13	28.68	DNA repair protein XRCC2 OS=Homo sapiens OX=9606 GN=XRCC2 PE=1 SV=1	[more]

BLAST of Lsi11G001270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C3R7	2.2e-147	83.38	DNA repair protein XRCC2 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
A0A1S3C491	3.1e-141	83.76	DNA repair protein XRCC2 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
A0A6J1GZX5	5.8e-140	82.52	DNA repair protein XRCC2 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1KC54	4.9e-139	82.85	DNA repair protein XRCC2 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A0A0KMH0	1.2e-137	81.85	RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G289900 PE=4...	[more]

BLAST of Lsi11G001270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456835.1	4.6e-147	83.38	PREDICTED: DNA repair protein XRCC2 homolog isoform X1 [Cucumis melo]	[more]
KAE8648111.1	3.1e-143	81.57	hypothetical protein Csa_004719 [Cucumis sativus]	[more]
XP_038891841.1	1.3e-141	84.39	DNA repair protein XRCC2 homolog isoform X2 [Benincasa hispida]	[more]
XP_031741381.1	4.9e-141	87.71	DNA repair protein XRCC2 homolog isoform X2 [Cucumis sativus]	[more]
XP_008456836.1	6.4e-141	83.76	PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo]	[more]

BLAST of Lsi11G001270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64520.1	2.4e-69	42.12	homolog of X-ray repair cross complementing 2 (XRCC2)	[more]
AT5G64520.2	5.3e-69	43.29	homolog of X-ray repair cross complementing 2 (XRCC2)	[more]
AT5G64520.3	6.3e-54	46.37	homolog of X-ray repair cross complementing 2 (XRCC2)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013632	DNA recombination and repair protein Rad51-like, C-terminal	PFAM	PF08423	Rad51	coord: 38..155 e-value: 2.2E-6 score: 27.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 29..272 e-value: 7.0E-24 score: 86.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 37..195
IPR030547	DNA repair protein XRCC2	PANTHER	PTHR46644	DNA REPAIR PROTEIN XRCC2	coord: 4..293
IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	PROSITE	PS50162	RECA_2	coord: 17..144 score: 11.16396

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G001270.1	Lsi11G001270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0000724	double-strand break repair via homologous recombination
cellular_component	GO:0033063	Rad51B-Rad51C-Rad51D-XRCC2 complex
cellular_component	GO:0005657	replication fork
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	ATP-dependent activity, acting on DNA
molecular_function	GO:0003677	DNA binding