Lsi11G001080 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G001080
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	tapetum determinant 1
Location	chr11: 1158188 .. 1158758 (+)
RNA-Seq Expression	Lsi11G001080
Synteny	Lsi11G001080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGCGATGGTTAAGGCTGCTGCAAGTTGTTCGTTGTTTGGAGCTTCAATTTTATTCCATCTCCTTTTACTTGCATCCTTTGATTGTACTGGTTAAGTGCCTAAACTACACACATTTTTTTATATATTTTAATTCTATGTTTTATATATATATATATATATTTCAATGCAATTTAAGAATATATATATATATTTTTTCTACATACTTATTAGGTGGAACATTAGAGGAAAAATGTGAAAAGAATTCGATAGCAGTAAGGCAAGGAGAAGGGGGGCGGCAGTTCAATGGGATACCAACGTATATGGTGGAGATAACAAACCAATGCCGGAACAATTGCACCATCTACGATCTTCATTTGAAATGTGGATCCTTCAGCTCAGCCAAATTAATAAACCCTCGCGTCTTCAAGCGCATTGCCGTCGACGATTGCCTTATCAACAATGGAAGACCAATCCCTCCGTCCACTACTCTTTCTTTTCAATATGCTACTACTTTTGAGTTCCCACTTTCAGTTTCCTCTCTCAAATGTATCAAATCTCAAATTTGAATAATGGAGAATAACTTTAAGATT

mRNA sequence

GTTGCGATGGTTAAGGCTGCTGCAAGTTGTTCGTTGTTTGGAGCTTCAATTTTATTCCATCTCCTTTTACTTGCATCCTTTGATTGTACTGGTGGAACATTAGAGGAAAAATGTGAAAAGAATTCGATAGCAGTAAGGCAAGGAGAAGGGGGGCGGCAGTTCAATGGGATACCAACGTATATGGTGGAGATAACAAACCAATGCCGGAACAATTGCACCATCTACGATCTTCATTTGAAATGTGGATCCTTCAGCTCAGCCAAATTAATAAACCCTCGCGTCTTCAAGCGCATTGCCGTCGACGATTGCCTTATCAACAATGGAAGACCAATCCCTCCGTCCACTACTCTTTCTTTTCAATATGCTACTACTTTTGAGTTCCCACTTTCAGTTTCCTCTCTCAAATGTATCAAATCTCAAATTTGAATAATGGAGAATAACTTTAAGATT

Coding sequence (CDS)

ATGGTTAAGGCTGCTGCAAGTTGTTCGTTGTTTGGAGCTTCAATTTTATTCCATCTCCTTTTACTTGCATCCTTTGATTGTACTGGTGGAACATTAGAGGAAAAATGTGAAAAGAATTCGATAGCAGTAAGGCAAGGAGAAGGGGGGCGGCAGTTCAATGGGATACCAACGTATATGGTGGAGATAACAAACCAATGCCGGAACAATTGCACCATCTACGATCTTCATTTGAAATGTGGATCCTTCAGCTCAGCCAAATTAATAAACCCTCGCGTCTTCAAGCGCATTGCCGTCGACGATTGCCTTATCAACAATGGAAGACCAATCCCTCCGTCCACTACTCTTTCTTTTCAATATGCTACTACTTTTGAGTTCCCACTTTCAGTTTCCTCTCTCAAATGTATCAAATCTCAAATTTGA

Protein sequence

MVKAAASCSLFGASILFHLLLLASFDCTGGTLEEKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLKCIKSQI

Homology

[Close]

BLAST of Lsi11G001080 vs. ExPASy Swiss-Prot
Match: Q6TLJ2 (Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.0e-29
Identity = 60/101 (59.41%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 34  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVF 93
           EKC+   I V Q       NGIP YMVEITNQC + C I  +H+ CG FSSAKLINPRVF
Sbjct: 75  EKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVF 134

Query: 94  KRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLKC 135
           KRI  DDCL+NNG+P+P  +TLSF YA TF + LSV+ + C
Sbjct: 135 KRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFVTC 175

[Close]

BLAST of Lsi11G001080 vs. ExPASy Swiss-Prot
Match: Q1G3T1 (TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-26
Identity = 55/116 (47.41%), Postives = 80/116 (68.97%), Query Frame = 0


Query: 21  LLASFDCTGGT--LEEKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLK 80
           LL S D   GT  + + C K+ I + QG      +G+P+Y VEI N C ++C I ++H+ 
Sbjct: 63  LLLSPDIGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHVS 122

Query: 81  CGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLKC 135
           CG FSS +L+NPRVF+R+  DDCL+N+G+P+ P  +LSFQYA +F +PLSV+S+ C
Sbjct: 123 CGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVASVSC 178

[Close]

BLAST of Lsi11G001080 vs. ExPASy Swiss-Prot
Match: Q8S6P9 (TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.1e-21
Identity = 43/101 (42.57%), Postives = 67/101 (66.34%), Query Frame = 0


Query: 34  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVF 93
           + C + ++ V Q       +GIPTY VEI N C   CT+YD+H+ CG F+SA+L++P  F
Sbjct: 69  DSCSEQNVVVYQNNAEHLPSGIPTYSVEIINVC-TACTVYDVHISCGEFASAELVDPSQF 128

Query: 94  KRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLKC 135
           +RI  +DCL+  G  + PS  +SFQY+ +F +PL+V+++ C
Sbjct: 129 QRIGFNDCLVKGGGRLGPSEAVSFQYSNSFAYPLAVANVAC 168

[Close]

BLAST of Lsi11G001080 vs. ExPASy Swiss-Prot
Match: Q2QR54 (TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.5e-19
Identity = 42/103 (40.78%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 39  NSIAVRQGEGGRQFNGIPTYMVEITNQCR------NNCTIYDLHLKCGSFSSAKLINPRV 98
           + IA+ QG      +G+P Y V++ N+C         C I  +H++CG FSS  L++PRV
Sbjct: 118 DDIAIYQGRATPLPSGVPAYTVDVMNRCAGGGGGDEECAIAGIHVRCGWFSSVSLVDPRV 177

Query: 99  FKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLKCI 136
           F+R+  DDCL+N+GRP+    T+SF+Y  +F + LSVS   C+
Sbjct: 178 FRRLGHDDCLLNDGRPLLAGETVSFEYTNSFPYKLSVSVATCV 220

[Close]

BLAST of Lsi11G001080 vs. ExPASy Swiss-Prot
Match: A8MS78 (Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.7e-07
Identity = 31/103 (30.10%), Postives = 53/103 (51.46%), Query Frame = 0


Query: 27  CTGGTLEEKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAK 86
           C G + E    +  +  R+G+          + VE+ N+C   C I +L LKC  F  + 
Sbjct: 26  CEGKSSEPAVRQTQVKWREGK---------KFRVEVMNKC-PMCPIINLRLKCQGFPQS- 85

Query: 87  LINPRVFKRI--AVDDCLINNGRPIPPSTTLSFQYATTFEFPL 128
           L++P   + +  +  +C++N+G P+ P  TLSF Y+ T +F L
Sbjct: 86  LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTLSFNYSNTHQFAL 117

[Close]

BLAST of Lsi11G001080 vs. ExPASy TrEMBL
Match: A0A4Y7JHE6 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_006762 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 6.1e-28
Identity = 61/101 (60.40%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 34  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVF 93
           EKC K+ I V QG      NGIPTY VEI N C + C I  +HL CG FSSA+LINPR+F
Sbjct: 101 EKCSKSDIIVNQGSTSPLPNGIPTYTVEIMNVCVSGCDISRIHLSCGWFSSARLINPRLF 160

Query: 94  KRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLKC 135
           KRI  DDC++N+G+P+P   TLSFQYA TF +PLSVSS+ C
Sbjct: 161 KRIRYDDCIVNDGKPLPDGATLSFQYANTFRYPLSVSSVTC 201

[Close]

BLAST of Lsi11G001080 vs. ExPASy TrEMBL
Match: A0A6D2JJ26 (Ribosomal_S5_C domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS24501 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 8.0e-28
Identity = 61/106 (57.55%), Postives = 75/106 (70.75%), Query Frame = 0


Query: 34  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVF 93
           EKC+++ I V Q       NGIP Y VEITNQC + C I  +H+ CG FSSAKLINPRVF
Sbjct: 71  EKCKRSDIVVNQAATEPMPNGIPGYTVEITNQCMSGCNISRIHVSCGWFSSAKLINPRVF 130

Query: 94  KRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLKCIKSQI 140
           KRI  DDCL+NNG+P+P  +TLSF YA TF +PLSVS + C +  +
Sbjct: 131 KRIHYDDCLVNNGKPLPYGSTLSFHYANTFPYPLSVSFVTCSQGDV 176

[Close]

BLAST of Lsi11G001080 vs. ExPASy TrEMBL
Match: A0A1J3EQ76 (Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR10214_c0_g1_i1_g.33666 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 61/101 (60.40%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 34  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVF 93
           EKC+++ I V Q       NGIP Y VEITNQC + C I  +H+ CG FSSAKLINPRVF
Sbjct: 138 EKCKRSDIVVNQAATEPMPNGIPGYTVEITNQCMSGCKISRIHVSCGWFSSAKLINPRVF 197

Query: 94  KRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLKC 135
           KRI  DDCL+NNG+P+P  +TLSF YA TF +PLSVS + C
Sbjct: 198 KRIHYDDCLVNNGKPLPYGSTLSFHYANTFPYPLSVSFVTC 238

[Close]

BLAST of Lsi11G001080 vs. ExPASy TrEMBL
Match: A0A1J3GVG9 (Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=LE_TR17747_c0_g1_i1_g.57233 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 61/101 (60.40%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 34  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVF 93
           EKC+++ I V Q       NGIP Y VEITNQC + C I  +H+ CG FSSAKLINPRVF
Sbjct: 121 EKCKRSDIVVNQAATEPMPNGIPGYTVEITNQCMSGCKISRIHVSCGWFSSAKLINPRVF 180

Query: 94  KRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLKC 135
           KRI  DDCL+NNG+P+P  +TLSF YA TF +PLSVS + C
Sbjct: 181 KRIHYDDCLVNNGKPLPYGSTLSFHYANTFPYPLSVSFVTC 221

[Close]

BLAST of Lsi11G001080 vs. ExPASy TrEMBL
Match: A0A1J3JZ23 (Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR26882_c0_g1_i1_g.79983 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 61/101 (60.40%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 34  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVF 93
           EKC+++ I V Q       NGIP Y VEITNQC + C I  +H+ CG FSSAKLINPRVF
Sbjct: 121 EKCKRSDIVVNQAATEPMPNGIPGYTVEITNQCMSGCKISRIHVSCGWFSSAKLINPRVF 180

Query: 94  KRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLKC 135
           KRI  DDCL+NNG+P+P  +TLSF YA TF +PLSVS + C
Sbjct: 181 KRIHYDDCLVNNGKPLPYGSTLSFHYANTFPYPLSVSFVTC 221

[Close]

BLAST of Lsi11G001080 vs. NCBI nr
Match: RZC59460.1 (hypothetical protein C5167_006762 [Papaver somniferum])

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-27
Identity = 61/101 (60.40%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 34  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVF 93
           EKC K+ I V QG      NGIPTY VEI N C + C I  +HL CG FSSA+LINPR+F
Sbjct: 101 EKCSKSDIIVNQGSTSPLPNGIPTYTVEIMNVCVSGCDISRIHLSCGWFSSARLINPRLF 160

Query: 94  KRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLKC 135
           KRI  DDC++N+G+P+P   TLSFQYA TF +PLSVSS+ C
Sbjct: 161 KRIRYDDCIVNDGKPLPDGATLSFQYANTFRYPLSVSSVTC 201

[Close]

BLAST of Lsi11G001080 vs. NCBI nr
Match: XP_026379521.1 (protein TAPETUM DETERMINANT 1-like [Papaver somniferum])

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-27
Identity = 61/101 (60.40%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 34  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVF 93
           EKC K+ I V QG      NGIPTY VEI N C + C I  +HL CG FSSA+LINPR+F
Sbjct: 96  EKCSKSDIIVNQGSTSPLPNGIPTYTVEIMNVCVSGCDISRIHLSCGWFSSARLINPRLF 155

Query: 94  KRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLKC 135
           KRI  DDC++N+G+P+P   TLSFQYA TF +PLSVSS+ C
Sbjct: 156 KRIRYDDCIVNDGKPLPDGATLSFQYANTFRYPLSVSSVTC 196

[Close]

BLAST of Lsi11G001080 vs. NCBI nr
Match: XP_026382275.1 (protein TAPETUM DETERMINANT 1-like [Papaver somniferum])

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-27
Identity = 61/101 (60.40%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 34  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVF 93
           EKC K+ I V QG      NGIPTY VEI N C + C I  +HL CG FSSA+LINPR+F
Sbjct: 96  EKCSKSDIIVNQGSTSPLPNGIPTYTVEIMNVCVSGCDISRIHLSCGWFSSARLINPRLF 155

Query: 94  KRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLKC 135
           KRI  DDC++N+G+P+P   TLSFQYA TF +PLSVSS+ C
Sbjct: 156 KRIRYDDCIVNDGKPLPNGATLSFQYANTFRYPLSVSSVTC 196

[Close]

BLAST of Lsi11G001080 vs. NCBI nr
Match: CAA7037266.1 (unnamed protein product [Microthlaspi erraticum] >CAA7037273.1 unnamed protein product [Microthlaspi erraticum] >CAA7038986.1 unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-27
Identity = 61/106 (57.55%), Postives = 75/106 (70.75%), Query Frame = 0


Query: 34  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVF 93
           EKC+++ I V Q       NGIP Y VEITNQC + C I  +H+ CG FSSAKLINPRVF
Sbjct: 71  EKCKRSDIVVNQAATEPMPNGIPGYTVEITNQCMSGCNISRIHVSCGWFSSAKLINPRVF 130

Query: 94  KRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLKCIKSQI 140
           KRI  DDCL+NNG+P+P  +TLSF YA TF +PLSVS + C +  +
Sbjct: 131 KRIHYDDCLVNNGKPLPYGSTLSFHYANTFPYPLSVSFVTCSQGDV 176

[Close]

BLAST of Lsi11G001080 vs. NCBI nr
Match: RYR31335.1 (hypothetical protein Ahy_B01g056139 [Arachis hypogaea])

HSP 1 Score: 131.7 bits (330), Expect = 4.8e-27
Identity = 62/135 (45.93%), Postives = 93/135 (68.89%), Query Frame = 0


Query: 1   MVKAAASCSLFGASILFHLLLLASFDCTGGTLEEKCEKNSIAVRQGEGGRQFNGIPTYMV 60
           +VK + + S+   S+ F L +L   +     + + C K  IA+  GE     +GIP+Y V
Sbjct: 4   VVKCSKARSICMVSMAFALTVLLDVE-DMNRIGKACSKEDIAIYTGEAAPLPSGIPSYAV 63

Query: 61  EITNQCRNNCTIYDLHLKCGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYA 120
           +I N+C N+C+I ++ L CG FSSA+LINPR+F+R+  DDCL+N+GRP+PP+T +SFQYA
Sbjct: 64  QIMNKCSNDCSIANIRLHCGWFSSARLINPRLFRRLRYDDCLVNDGRPLPPATAISFQYA 123

Query: 121 TTFEFPLSVSSLKCI 136
            TF +PL+V+SL C+
Sbjct: 124 NTFRYPLTVASLVCL 137

[Close]

BLAST of Lsi11G001080 vs. TAIR 10
Match: AT4G24972.1 (tapetum determinant 1 )

HSP 1 Score: 128.3 bits (321), Expect = 4.9e-30
Identity = 60/101 (59.41%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 34  EKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAKLINPRVF 93
           EKC+   I V Q       NGIP YMVEITNQC + C I  +H+ CG FSSAKLINPRVF
Sbjct: 75  EKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVF 134

Query: 94  KRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLKC 135
           KRI  DDCL+NNG+P+P  +TLSF YA TF + LSV+ + C
Sbjct: 135 KRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFVTC 175

[Close]

BLAST of Lsi11G001080 vs. TAIR 10
Match: AT1G32583.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 120.9 bits (302), Expect = 7.9e-28
Identity = 55/116 (47.41%), Postives = 80/116 (68.97%), Query Frame = 0


Query: 21  LLASFDCTGGT--LEEKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLK 80
           LL S D   GT  + + C K+ I + QG      +G+P+Y VEI N C ++C I ++H+ 
Sbjct: 63  LLLSPDIGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHVS 122

Query: 81  CGSFSSAKLINPRVFKRIAVDDCLINNGRPIPPSTTLSFQYATTFEFPLSVSSLKC 135
           CG FSS +L+NPRVF+R+  DDCL+N+G+P+ P  +LSFQYA +F +PLSV+S+ C
Sbjct: 123 CGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVASVSC 178

[Close]

BLAST of Lsi11G001080 vs. TAIR 10
Match: AT1G05835.1 (PHD finger protein )

HSP 1 Score: 55.5 bits (132), Expect = 4.1e-08
Identity = 31/103 (30.10%), Postives = 53/103 (51.46%), Query Frame = 0


Query: 27  CTGGTLEEKCEKNSIAVRQGEGGRQFNGIPTYMVEITNQCRNNCTIYDLHLKCGSFSSAK 86
           C G + E    +  +  R+G+          + VE+ N+C   C I +L LKC  F  + 
Sbjct: 26  CEGKSSEPAVRQTQVKWREGK---------KFRVEVMNKC-PMCPIINLRLKCQGFPQS- 85

Query: 87  LINPRVFKRI--AVDDCLINNGRPIPPSTTLSFQYATTFEFPL 128
           L++P   + +  +  +C++N+G P+ P  TLSF Y+ T +F L
Sbjct: 86  LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTLSFNYSNTHQFAL 117

The following BLAST results are available for this feature:

BLAST of Lsi11G001080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6TLJ2	7.0e-29	59.41	Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1	[more]
Q1G3T1	1.1e-26	47.41	TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1	[more]
Q8S6P9	4.1e-21	42.57	TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 S...	[more]
Q2QR54	6.5e-19	40.78	TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 S...	[more]
A8MS78	5.7e-07	30.10	Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 P...	[more]

BLAST of Lsi11G001080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Y7JHE6	6.1e-28	60.40	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_006762 PE=4 SV=1	[more]
A0A6D2JJ26	8.0e-28	57.55	Ribosomal_S5_C domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN...	[more]
A0A1J3EQ76	1.8e-27	60.40	Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR102...	[more]
A0A1J3GVG9	1.8e-27	60.40	Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=LE_TR177...	[more]
A0A1J3JZ23	1.8e-27	60.40	Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=MP_TR268...	[more]

BLAST of Lsi11G001080 vs. NCBI nr


Match Name	E-value	Identity	Description
RZC59460.1	1.3e-27	60.40	hypothetical protein C5167_006762 [Papaver somniferum]	[more]
XP_026379521.1	1.3e-27	60.40	protein TAPETUM DETERMINANT 1-like [Papaver somniferum]	[more]
XP_026382275.1	1.7e-27	60.40	protein TAPETUM DETERMINANT 1-like [Papaver somniferum]	[more]
CAA7037266.1	1.7e-27	57.55	unnamed protein product [Microthlaspi erraticum] >CAA7037273.1 unnamed protein p...	[more]
RYR31335.1	4.8e-27	45.93	hypothetical protein Ahy_B01g056139 [Arachis hypogaea]	[more]

BLAST of Lsi11G001080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24972.1	4.9e-30	59.41	tapetum determinant 1	[more]
AT1G32583.1	7.9e-28	47.41	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G05835.1	4.1e-08	30.10	PHD finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040361	Tapetum determinant 1	PANTHER	PTHR33184	PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATED	coord: 28..134
None	No IPR available	PANTHER	PTHR33184:SF67	PROTEIN TAPETUM DETERMINANT 1	coord: 28..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G001080.1	Lsi11G001080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane