Lsi11G000990 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G000990
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	survival of motor neuron-related-splicing factor 30
Location	chr11: 1048043 .. 1057296 (+)
RNA-Seq Expression	Lsi11G000990
Synteny	Lsi11G000990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGTTGTAGGCTTATAGCCCCCCTCCCTAGTCCCCTACTTTGGGCCGACCCAGATTCCATAGCCCGAACACTGAGCCTCAAAAAGGGCTGCGTTCTTAATCGCGGGGAAGGTGGCGTTGTGTGTGCCTTCTCCATCATCCTCTGATTCTCGTTCTGATTTTTCCAATTTTACGCTCTTTTTCTTCCTTCTCCTCCTCTGTTCATCCTTCCAAGATATTCTCCCACATAATTCTGTAGTTTCAACTTTTGAATTCATCTTCTGCCAAAATGCAAGGAGGAGAAGATGTAAGCATTGAAGAGTTGGCTAATAATCTCTCCACCTACAAAGACCAGCTTCAGCAGGTACTCCTCTTCGCCATTTCTTTCTGGCTAACAATCCGCTCATTCTTTTCTTTTCTTCCTTTTTTTATGATTTTGTTTCAGTTACTGGGGTTCTCTTTTTTCAAATTTATTCAAAGCAAAATTGGATATTTATGATCTTGTAAACCTTTGCCGCTGTCATTCTTGAGTTCTTCCCAGTAGTTTGTATCTGAATTAGGGGTTTGCTCACCACCTTGGACTATTGCGGTGCTAAGTTGCAGCGAATCCGGAGGAAATGGAACCTGTATTGGATAATTGCATTAAACCTAGAAATTTAGAACCTAATCCACATATAATTGCATTAAACCTAGAAATGTAGAACTTAATCCACATAAGTTAGTATCAAGATTCTTTCTAGGACTTTCCAGTTTAATGAGGTTTTATCTGTCCTTTTTTATTTTTTTATTTTTTACACTTAGGATACTGAAAATCTTGAGCAGGGTTTAAGCATCTGAATGATTTTTACATTTGTATGGCGAATTCTTAATTGTCAGTCACTTCCTCTACCTAACTACATGAATTCTTGGCTTCCTCACTTTGTTTCATTTTGTATATAAGTTTCTGGGTAAAATAACTTCTTTCTATCCTGATCCAGGTCAGACAGCTGTTAGATGATGATCCTAGCAACTCTGAATACATCGATATGGAAAAGGAGCTTGAAGAGGTAGTTTGTTTTTGTCCTCCTAGTATGCCCATCCTTCCTTGTGAACTCGTCGCATGTGTATGGTTTAGCACTCTTCATATTCCCGCTGAATGTATTATTAGGTTCAGCTTCTGCTGTAGCACTAAGGATCAGAGAACGCTCAGAACTATTATTTTTATTACGTGGGTTTCCAGTCAAGTTTGCTTTCTTTCTTTTGTTTGTCTTCCTTTTTCCTTCTAAAGGAATCATGTTGTTGAAATAAGAAAGAGGTATGGCCCCTGTGGAGATTGTCATTTTCATTTTTGGGAGGAAAAGGTGAGGGGGTTGTATCTTTCATTTATGTGCTCCAGAGCTCTAATCTCTGGTCATAAATGATCATTATTGGATATGTGTGAAAATTTGAAACTTCATCAAGATGCACATCACTTCTACCTTGGTTCCCTTGCAGGTGTGCTAATATTCGTGATGGCCAGTCTGCTCTTCCCCTGACCTCCTTTCAGATGCTGATCCTGAGATTTAAGTTCTTGTGTTTATTTCTTTTTTTTTTTTCTTTTTTTTTTGGGGACAAATACCTGCTCTTTATGAAATTTACCGTTGGAGATATATTTTAACAGAAACATTGGACTTGGGCTAAAGTTGCAGTAATGCAGGTTATCGCTTTGACGGAAGAACTTCTTTCAACAGCAAAGCAAAATGAGATTTCTGGATCAAATGTAGAAACAGGTGATGACAGCGCATCAATTAGTTTCCAGCAGCCTAAAGAAAATGAGATGGTAAGTTCACATTTGTCCTCAGTTTGCACATTGCGTTTCTCTGCTGGAAGCAACATAATGTTATAGATGGTTATAGCTTTAGATTTAACGCACACTGCTTGGATCTCTGTGTGGTTCGTTGTATATGTTGGTATTGTTTTTGTGTACGTGCTCACATGTGCAACTGCAAACACATTTGTGTTTGTGTTTTGAAGGCTTAATATCTTTTCCTTATTTGGAAGCATACCTCGTAACCATTTACTGGCATGTGGTTTTGTTTCATAATCTGAAAGACAATGTCCTTGAACACAACACTGAAAACCCACTAAAGATTGGACATGGAGAACAACTTCCACCACAAGCCTTTGAATATCAACAACCAAAGGAGAGATGTTGGGACCCATCATTATCCGCCAAATGAGAGGGCAAATTGAGGGTAACAAACAATGAGAAGGAAACTTTCTTTGGAGTGTAAGAGAGCAGTTGAGAGCTCCAAAGATCATAACCCAAATAATGAGGTTTACTCGACGAGGGCATTTTGATTTCCATAGAGCTTTGTAAAGAAGTTTATACATTGAAGTAGATGCCGACAAGTGCTTGTAAAGAGATTTAACTGAAAACAAACCTGAAGACTCCAACTTCCAACTTCTTGAATCTGGGCGATCAAGAACTGTTCGGCCTTTTGAAGAACCCAATAAAATATGAAAATCCAAAGCTTTCTCATCCTTTAAAAACCGTTTAAAAGAGATAGACAAAGAGAGAGTGGTTGCATCCCACTACTCCACTGCTGAACCATTTGGATTAGTAGAAATCCTTAGAAGACTTGGGAATAAAGATCCCAAATTAGAATTATCCAACCATGGGTCATGCCAAAAAGAGATCCTGCTGCCATTTTCAAGTTTAAACAAAGCAAGAGAATCCTAAGTCTAACCCTTTGGAGGGCTTCTCTTGTAAGTCGTTCTTGTCATTTGATATTTTATGGAAGATTAAGATTCCAAAGAACGTCAAGTTCTTTTCTTGGAAAGTTTTGCTTGGTCGTGTGCAGTGTTTTAAAAAGCCTTCCCGGACATATGCCTAGGCGCGCCTAGACTCAAGGCACAAGTCTTTCGCCTCTCCAAGTAACCAAGTTGCCCCATTCATTTTTTTCATAAGATGCAAATTTTATTGATGTATAAAACTTACAAAAGAGGGTGAAGCCCTAACCAAAAGAGTTACAAAATATTTCTCAAATTGGTTAAAAGAGAGGTGCATGTACTCCAAGACATAGCAAGGAGAAGAATATGATCAAATAAACTATCGAAGGTGCTTTCGTATCTTGAAGGAGGAGGTTGTTGTGCTCTTTCCAAGTTGTCCACAAAAAACTCGAATTAGATGCATCCAAAGGATTCTTTTTCCCTCTGTAAATGGGCGGCCAAAGAGTAATTGAGCAAAATGTTGATATCACTACAAATTATGGGTTCCATCTAAAAGCAACAATCAATTCTTTCCTAAATTTGTTGGCAAACTGGCATTTGATGATGAAGTGTCTTTGAGAAAGGGTGATAGAGGACCACCTTGACGAAGGCCTCTGGTGGCTAAGATCTTACCTTCAGGGCGGCCATTGATAATTATGGAGAAGTTTGTTCATGAAATGCACTCCCTTAGATATCTTCTCCATGTTGAACCAAATCCCTTGGCATTGTGGATTAAATCAAGGAAATCCCAATCCACTTTGTCATAAGCCTTTTCAATGTTAAGCTTAACCACATTGTCATTTCTTTTCGTTTTGTGATATTCATTGATGGTTTTGTTGGCAACCAAGGATGTATAAAGAATTTGTCTTCCCTCCACATATCCACAATACCTGATACATCCTTGATTGCCAACACTCTAACACTCTCACTTACTTGTGATCTGTTTGGATACTCCTTACTATGATTCCAAAATAACGAACAACGATTACAAGTTCCAAAGTAAATTACAAACTATCTTAAAAACAAAGAGAAAGTAAAGGATAACCCTAGCCAATTTCGGAGGGCTGGTATCTCTTCCAAAAAGGCTTTAACAGTCCTTTTCAACCAAAATGAGCATAGCTCAATTGGCATTCGAGAGTATTAGTAACTACGAGGTTTGTGGTTCGAATTTCCCAACTCCCAAGTGTTGTATTGAAAAAAAAAAGTTATTTTCTACAAAATCCCAGATAGCGGCTCCCTCACCCCTTCCCCAAACACTATAATGACATTCTCTCGCATTCGTACATGGTTACACGATTGAACCACATATTGTCTTGGGTGAAGTACCCTTCTTACCTCTCCTCATATATACTTTCTTAACCAGAGGCCTAAGACGATCATCTTTTTAAATTGAGACCTTAGAAGCACAAACACAAATATGGATAAGGAACATAGATAAGACAGGACATGACGATGCATCAGTTTCTAAAAAACTAGGATACAAATATGTTGGGGATACACTATGTAAATATATTTTCAATTTTTTAAAAATATATATATGTAAATTTAACAAAAAGATACAAATACTAAATGAAATCCACTCAAAAGTGTTTAATAGCTTACGAAAACTAACTAGTAAGTTGAGGAAATAAAGAGATTAAAAAAACATGTAATGTACTGTAGTTTGCAGACCATCCACAAGAAAAAGAAATTATTTGAAAAAAAAAGTTGCATTTAATGCTTGGCAGCAAAGAAGTACTCAATCAAATTTAAATAATATTTTATTATTATTTAATTTATTCCATTCACATATTTCAATGTGAGGCTTTTCATTTTTTTAATATTCTCAAGTGTTCGGACTAGTTTGCGCGCACCTCGACTAGTCTCACCCTCGCTCTTCAACATGTTGGCACCAAGGAAACTCATAGGATATTTAGTTCTAGGTAGGTGGGTACGATAGATTGAACTCATTCCCTTTAAGTTCTTTATTGAACCTATGGCCCTTATTGGTGGGCACTATGTCAACCCATGGTGGTTGTGAGGCTTCTCATTTTCGTTTTCTATTCTTTCTTCTTCCACACTCCACTCCATTTCGTTTTTGTACATTGAGACCACTCTCCATCTCTTTTTCCAAACTCCTCCTTTTTCTATTCTTCCATTTTTTCCCTTTATTTCAGCCGTGCTAATCTTTGGCATTTTTTTCCATTTCCAAACTCTCCACTCTTCTTCTCTGGTTGTTTGGTCCACACTAATTGTCGGTATTTTTAGTTTCATTTTTCATTTTCTATTTTACGGATGTTTTTGAATGTGGCTGGGCTTTCTTCCTTCCTTTAAAATTTTCTTCAACATGTCCATCAATGTGTCCTAATGTATCTCCAGCATGCTGGAAATTCTAAAAAGAAAGTGGGACACATAAAGTTGCACATCGGAGATGTGTCTGGACGTATCCTTGTCCACTATTTTACCACTTTCGGCTTTCACCATTTTCACTCCACTGTATGCTCACCTTCAAATTAGCCTCCACTTGACAATCTCTGTCCCTGAAGCAGCAACCAAAATTACGTGTTCTATTCTTTTCCTTTCACCCCTATAAGCTAAGGAAGGAGGGGCCAACATTATTATTTTTTGCCCCTTTCAATCGGGAACCTTGCTGTCACCGTCAGCCACCTACTGATGTTGTTGGTAGTTGTTCCCCTCTATGGTAGATGTGCACTTCCCATAATAAGTCTCAGACTAATTTGGTATAGGGGTAACTCTTTTGGTGGAACACTTTTTTCCCCCTCAAATGTCTTGTTAGTTTTTATCTGACCTTATTGTGTTCTATTATTTGAGAGTTACATGGACTGTTAAATCTGAAAAAATTATATCAAGTATAAGCAATAATGATCCTATTTTCAAGCATTTGCATTCCCATTCCCGCGTACCGAAAGCCAACAGTGGTATCAGTGTAATGTCTACTATTAAACATTTAATTGCTTTTACTTGGGTCAATCTTTCAAAGCCTTTCGTAACTACCCTTTGTTTTCGTTCTCAGCCAATTGGATAGCCTTTTGTTATTTATTCATTTTTATTTTGTCTCTGGAGGATTCCTAATTCTCCTTTATTTCTCTGTACCTCTCTTTTTAAATTTTAAGACATACTGCAAAGAACAATTAGAATGGTTTGACATGGAAGCAGTACCACTCAAGAGACTTCATAAATTGCTTGGCAGTTGAATCAACCACCTTCCTTTGAATTGTATTTCAATATTTTATGCCATTCATGTACGTAATGCTTACATGGAAGCGTGTGTTGAGATGTTTAGTGATCTAATATTCTATGTTCTTGGTATGCAGGAAGCTGGAAGCATGTCTGATTATCACGAGAAATTTCCTATTGGATCAAAAGTTCAAGCCGTTTGGAGTGAGGACGGGGAGTGGTGAGTAAAAAAATGGAGAAAATTTACAACCCTACTTAAACAGAACAGGTTGTACAGCTGTGCCCTTGGGTTCTAAAAAAGGAATTTTATCCTCCAACTTATTCTCTTTTTAATTAGAAAAGAGACGTTGAAGATAAATGGTGTTTGAAAGAGATGTGTGCTTGAAAGTTTACGAATTACTGGGGCATGTACTTGAGAGTATTGAAAGGACTCTAGTGCCAAAATTATCTGTGAGCATGGAGGGGTTGTGTTTTTTGTTTTTGTTTTCATTGAGATTTTGACTATCCAATATAAGAAGCTGTGACATTTCCATAAAGTTAGTTTTGCAAAATGGATGTTAATGAAAATCAGGTTATTGTTCTACTATGACAGCAGCTAAGCTGCCTCAAAATTGGCCAAACTTTGTAAATTTATTTCATTAATTCCTCTTAAAGAAAAACCTTAGCGTCTTTGTAGAGAAAAATGGGATGAAAAAACATGTAAATTTAGAGTTTGTTTAAACCAATTTGATACCACCATGACTATAATAGCCATTCCCTTTGTGAAAATTATGAACCTAAACTCGTCTTCATCTCTCTCCTCCAGTTTTCAGTTCATTGTGTCTGTTCAGTAAGGAGGGTTGGTCCCTAGTCAGGTTTAATGCGTCTCTTTGACCTTTAATTACTGAAGAGTTGTATAACGTTTCGCGCGATCTTACTTTTTAGATTAGAGCCCCTTTCTGCATAGCTGGTTCTTTGAGGTTCCCTTTCTCGGGCCATTTTTTATATGCCGCTCTTGTTCTTTCATGTTTCTTAATGTAACCATTTTTTATTGTAAAAAGATTTTCTGTTCAGCTATCTTGTTTTGAGCCTTCGAAGTAACACCTTCACCTGGTCTCTTATCAAAATGAATGATAAGTCTATGAGAATAAGTCTTAGTCCGTTGAAGCTGATTTTAGTTTCTAGGTCTCCAAGCATATACTAATTTTGTTGATGGACGCATTTTTTTACTTCTCTTAGCTTCAATGTTTTCTGCCATCTTCTTTGAAGCTTTGGTTTTTTTCCCTTTTTGTTTAACTACTTTTCCTTCGACTGTTTTTCTAATAGAAACAAAAATTTTCCCTTGATTGTGTTCAATTGTATGAATACTCAGGTACGATGCTACAATTGAAGCCCACACTGTAAATGGTTTCTATGTTAGTTTTGATGGTTGGGGAAACAAGGAAGAGGTAAGGTTTCTACACCTGCAGTTTGCATGACTGTTTTGATTATTTTTAAGAGTGTTATCTTTTATCAAGGAAAAAAAAGAGTATTCTAGTATTTCTTCAAAAAGATCTGGGGCTGATTCTCTCTAAATTAACTAGAAATGTGAGGAATTGGTTCTTGGTTTGTAAATACGGGACATTTCCCTTTGGATGGGTTCAATCCGTAGGATTTAGGACTAAAATCGTATGTAATAATTCTTGGAAGGCCATCTTCGTTGGTTTTGTTTGTTGGATTAGCTGGTATAAATACCACGGTTTCCTCTTTGTAAGACTTGATTGAAGATTACTAAAATTTTTGCATTTTGGTTTACTCTAGTTTGCCTAGAAAACTCATAGGTATCTTGAACTCATTTTCTCTAAACTCTTTGTTATTTATATTGGCCCTAATTATTACTAGGCCAATAACTAATAAGGTATTGTTTCTTTTTGAAAAGAAAAAAGGGGGAGGCAACTGCAAGTACAAGAAGAGTAAGCATGAGGGAGAGCTCAATGAAGTTTAGGAGTTCGAATCATAATATACATATTTATGAAGTTTAGGAGTTCTATACACACACACATACGTATTACGCACTTTACGTACATACACACATATACCTTTTAAATGGAACTATTGGCCTTTTTCTTAAGTAGTGAGTCAGTTGCACCAATTGTCAACAGTTATGATATCTACTAATTTTAGGTGGACCCTGCAAATGTAAGAACAATCCAACTGGAAGTTAATGCTTTGCTTGAAGCAGAAAGAATGGCTGAAGCTACAAAGCAGGCTATCAAGCGCAAGATTGCTCAAGCTGCTTCTGTTGACTTCCAATCACGAAATTTACCATCAAAGCTTCGAATTGAACCTGATGATCCTGAGGACGTAGTAAGTAGTTAATAATCTTAATATTTCATGACCACTAATTTATTAATCTAGTAATTAGTTTGGTATTTAAGACATTTATAAGTGCATTTGTTTTGTATCTCTGGTGTTTGTATAGAAAGCCACCAAACGCAAGAAAATACATGCTTTCAAGTCAAAGATGCGGGTAGAACAGCTTGAAGTTACCCAAAATAAACGGCAGAATGCTTGGCAGCAGTTTCAATCAGCAAAAGGCAAGTCTAAGAAGGTAAGTCTTGTGGAATCTAGCATTTTGTTGAATATTCATGTGTTTTATAAAGAGGCCCTACAGGTATAAGGGAAAACCCCAAGGCCAAAGGATGTTTTTGAAAAGTACTTCAATTTACATTAATCAAAACAGAATAATAATAGCTAGAAGGGTTTAAGAGGAGATATCCTTGCAATTGCATTTTTCCTCTTCGGCACCATCTGATGACGATTAATAAATATGAATTCTCAGATTGGTTTCTTCTCTGGGCGAAAGAGGGAGAGCATTTTCAAGTCTCCGGATGATCCGAATGGCAAGGTTGGTGTGACTGGAAGTGGGAAGGGTTTAACCGAGTTTCAGAAGAGGGAAAAACACTTGCATCTCAAGGGTGCAACCGTGGAGATGGATGACTAAAGTGAGGTTAGATTTTGTAGGTTGCTGCTTTCTTTGTATGTAACTTCATTTAGTATCCAATCCATTTGATGCATCTGTGTGGTTAGATTCATATAAATGTGGTTTATACCCGTACTAAAAGTGTAGGTGGGGGGATTCCCTCCCGGTAACATAGTGTTTTCTTATGAGAATGGTTACGAAACCTAGCCATGACAGGATCATATTTTTTTTTTCCTTTGACGTTTTTATGTTTACTTGTTCTATTTCCTTAAAAGTAATGGGATGTGCACATTTATGTGAAAAAACCAATCGATTTTGTTCGAATTTCTACTCCCACTCCCACTCCCACTCCCACTACCAACTTTCTTTAGGAATGATCCTAGGTTGTTTAAGGGAGCTTACTTTATAATATAGCATGTGGAGGGGAG

mRNA sequence

TAGTTGTAGGCTTATAGCCCCCCTCCCTAGTCCCCTACTTTGGGCCGACCCAGATTCCATAGCCCGAACACTGAGCCTCAAAAAGGGCTGCGTTCTTAATCGCGGGGAAGGTGGCGTTGTGTGTGCCTTCTCCATCATCCTCTGATTCTCGTTCTGATTTTTCCAATTTTACGCTCTTTTTCTTCCTTCTCCTCCTCTGTTCATCCTTCCAAGATATTCTCCCACATAATTCTGTAGTTTCAACTTTTGAATTCATCTTCTGCCAAAATGCAAGGAGGAGAAGATGTAAGCATTGAAGAGTTGGCTAATAATCTCTCCACCTACAAAGACCAGCTTCAGCAGGTCAGACAGCTGTTAGATGATGATCCTAGCAACTCTGAATACATCGATATGGAAAAGGAGCTTGAAGAGAAACATTGGACTTGGGCTAAAGTTGCAGTAATGCAGGTTATCGCTTTGACGGAAGAACTTCTTTCAACAGCAAAGCAAAATGAGATTTCTGGATCAAATGTAGAAACAGGTGATGACAGCGCATCAATTAGTTTCCAGCAGCCTAAAGAAAATGAGATGTTTGCGCGCACCTCGACTAGTCTCACCCTCGCTCTTCAACATGTTGGCACCAAGGAAACTCATAGGATATTTAGTTCTAGGTACGATGCTACAATTGAAGCCCACACTGTAAATGGTTTCTATGTTAGTTTTGATGGTTGGGGAAACAAGGAAGAGGTGGACCCTGCAAATGTAAGAACAATCCAACTGGAAGTTAATGCTTTGCTTGAAGCAGAAAGAATGGCTGAAGCTACAAAGCAGGCTATCAAGCGCAAGATTGCTCAAGCTGCTTCTGTTGACTTCCAATCACGAAATTTACCATCAAAGCTTCGAATTGAACCTGATGATCCTGAGGACGTAAAAGCCACCAAACGCAAGAAAATACATGCTTTCAAGTCAAAGATGCGGGTAGAACAGCTTGAAGTTACCCAAAATAAACGGCAGAATGCTTGGCAGCAGTTTCAATCAGCAAAAGGCAAGTCTAAGAAGATTGGTTTCTTCTCTGGGCGAAAGAGGGAGAGCATTTTCAAGTCTCCGGATGATCCGAATGGCAAGGTTGGTGTGACTGGAAGTGGGAAGGGTTTAACCGAGTTTCAGAAGAGGGAAAAACACTTGCATCTCAAGGGTGCAACCGTGGAGATGGATGACTAAAGTGAGGTTAGATTTTGTAGGTTGCTGCTTTCTTTGTATGTAACTTCATTTAGTATCCAATCCATTTGATGCATCTGTGTGGTTAGATTCATATAAATGTGGTTTATACCCGTACTAAAAGTGTAGGTGGGGGGATTCCCTCCCGGTAACATAGTGTTTTCTTATGAGAATGGTTACGAAACCTAGCCATGACAGGATCATATTTTTTTTTTCCTTTGACGTTTTTATGTTTACTTGTTCTATTTCCTTAAAAGTAATGGGATGTGCACATTTATGTGAAAAAACCAATCGATTTTGTTCGAATTTCTACTCCCACTCCCACTCCCACTCCCACTACCAACTTTCTTTAGGAATGATCCTAGGTTGTTTAAGGGAGCTTACTTTATAATATAGCATGTGGAGGGGAG

Coding sequence (CDS)

ATGCAAGGAGGAGAAGATGTAAGCATTGAAGAGTTGGCTAATAATCTCTCCACCTACAAAGACCAGCTTCAGCAGGTCAGACAGCTGTTAGATGATGATCCTAGCAACTCTGAATACATCGATATGGAAAAGGAGCTTGAAGAGAAACATTGGACTTGGGCTAAAGTTGCAGTAATGCAGGTTATCGCTTTGACGGAAGAACTTCTTTCAACAGCAAAGCAAAATGAGATTTCTGGATCAAATGTAGAAACAGGTGATGACAGCGCATCAATTAGTTTCCAGCAGCCTAAAGAAAATGAGATGTTTGCGCGCACCTCGACTAGTCTCACCCTCGCTCTTCAACATGTTGGCACCAAGGAAACTCATAGGATATTTAGTTCTAGGTACGATGCTACAATTGAAGCCCACACTGTAAATGGTTTCTATGTTAGTTTTGATGGTTGGGGAAACAAGGAAGAGGTGGACCCTGCAAATGTAAGAACAATCCAACTGGAAGTTAATGCTTTGCTTGAAGCAGAAAGAATGGCTGAAGCTACAAAGCAGGCTATCAAGCGCAAGATTGCTCAAGCTGCTTCTGTTGACTTCCAATCACGAAATTTACCATCAAAGCTTCGAATTGAACCTGATGATCCTGAGGACGTAAAAGCCACCAAACGCAAGAAAATACATGCTTTCAAGTCAAAGATGCGGGTAGAACAGCTTGAAGTTACCCAAAATAAACGGCAGAATGCTTGGCAGCAGTTTCAATCAGCAAAAGGCAAGTCTAAGAAGATTGGTTTCTTCTCTGGGCGAAAGAGGGAGAGCATTTTCAAGTCTCCGGATGATCCGAATGGCAAGGTTGGTGTGACTGGAAGTGGGAAGGGTTTAACCGAGTTTCAGAAGAGGGAAAAACACTTGCATCTCAAGGGTGCAACCGTGGAGATGGATGACTAA

Protein sequence

MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQVIALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKETHRIFSSRYDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREKHLHLKGATVEMDD

Homology

[Close]

BLAST of Lsi11G000990 vs. ExPASy Swiss-Prot
Match: Q7ZV80 (Survival of motor neuron-related-splicing factor 30 OS=Danio rerio OX=7955 GN=smndc1 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.6e-07
Identity = 79/300 (26.33%), Postives = 122/300 (40.67%), Query Frame = 0


Query: 10  EELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQVIALTEELL 69
           EEL   LS YK QLQQV   L  DP N + + ++K+L+E            VI LT++LL
Sbjct: 3   EELMKQLSNYKAQLQQVEAALSIDPDNEDLLKLQKDLQE------------VIELTKDLL 62

Query: 70  STAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKETHRIFSSRY 129
           ++                       QP E      T +S T+A  H      H + +   
Sbjct: 63  TS-----------------------QPAEGT--TSTKSSETVAPSHSWRVGDHCMATWSQ 122

Query: 130 DATI------EAHTVNG-FYVSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAEATKQA 189
           D  +      E    NG   ++F G+GN                         AE     
Sbjct: 123 DGQVYEAEIEEIDNENGTAAITFAGYGN-------------------------AEVMPLH 182

Query: 190 IKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEVTQNKRQ 249
           + +K+ +    D       SK  ++ +  E  K   +KK+       R+++LE  +  ++
Sbjct: 183 MLKKVEEGRIRDEIDGKPKSKKELQAEQREYKKKKAQKKV------QRMKELEQEREDQK 229

Query: 250 NAWQQFQS-AKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSG---KGLTEFQKREKH 299
           + WQQF + A  K+KK     G+ + SIF SP+  NGKVGV   G   K +T++    K+
Sbjct: 243 SKWQQFNNKAYSKNKK-----GQVKRSIFASPESVNGKVGVGTCGIADKPMTQYNDTSKY 229

[Close]

BLAST of Lsi11G000990 vs. ExPASy Swiss-Prot
Match: Q6DEY1 (Survival of motor neuron-related-splicing factor 30 OS=Xenopus tropicalis OX=8364 GN=smndc1 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.6e-07
Identity = 83/296 (28.04%), Postives = 127/296 (42.91%), Query Frame = 0


Query: 10  EELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQVIALTEELL 69
           E+LA  L+ YK QLQQV   L  +  N + + ++K+L+E            VI LT++LL
Sbjct: 3   EDLAKQLAGYKAQLQQVESALTANGENEDLLKLKKDLQE------------VIELTKDLL 62

Query: 70  STAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKETHRIFSSRY 129
           S+           ET DD+          ++M A  S S  +  + +            Y
Sbjct: 63  SSQPS--------ETADDAC---------DDMSASGSQSWKVGEKCMAVWSDD---GQWY 122

Query: 130 DATI-EAHTVNG-FYVSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAEATKQAIKRKI 189
           +A I E    NG   ++F G+GN E     N+R ++       E  +  E          
Sbjct: 123 EAEIEEIDEENGTAAITFAGYGNAEVTSLLNLRPVE-------EGRKAKE---------- 182

Query: 190 AQAASVDFQSRNLPSKLRIEPDDPEDVKATKR-KKIHAFKSKMRVEQLEVTQNKRQNAWQ 249
                    S NLP   +      E + A +  KK  A K   R+++LE  +  ++  WQ
Sbjct: 183 --------DSGNLPMSKK------EMIAAQREYKKKKALKKAQRIKELEQEREDQKVKWQ 230

Query: 250 QFQS-AKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSG---KGLTEFQKREKH 299
           QF + A  K+KK     G+ + SIF SP+   GKVGV   G   K +T++Q   K+
Sbjct: 243 QFNNKAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKY 230

[Close]

BLAST of Lsi11G000990 vs. ExPASy Swiss-Prot
Match: Q5R591 (Survival of motor neuron-related-splicing factor 30 OS=Pongo abelii OX=9601 GN=SMNDC1 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.7e-07
Identity = 84/298 (28.19%), Postives = 128/298 (42.95%), Query Frame = 0


Query: 10  EELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQVIALTEELL 69
           E+LA  L++YK QLQQV   L  +  N + + ++K+L+E            VI LT++LL
Sbjct: 3   EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQE------------VIELTKDLL 62

Query: 70  STAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKETHRIFSSR- 129
           ST     ++ S+        S +  QP  +                VG K    I+S   
Sbjct: 63  STQPSETLASSD--------SFASTQPTHS--------------WKVGDK-CMAIWSEDG 122

Query: 130 --YDATI-EAHTVNG-FYVSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAEATKQAIK 189
             Y+A I E    NG   ++F G+GN              EV  LL  + + E  K    
Sbjct: 123 QCYEAEIEEIDEENGTAAITFAGYGN-------------AEVTPLLNLKPVEEGRK---- 182

Query: 190 RKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEVTQNKRQNA 249
                 A  D  ++ +  K  I        +  + KK  A K   R+++LE  +  ++  
Sbjct: 183 ------AKEDSGNKPMSKKEMI-------AQQREYKKKKALKKAQRIKELEQEREDQKVK 230

Query: 250 WQQFQS-AKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSG---KGLTEFQKREKH 299
           WQQF + A  K+KK     G+ + SIF SP+   GKVGV   G   K +T++Q   K+
Sbjct: 243 WQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKY 230

[Close]

BLAST of Lsi11G000990 vs. ExPASy Swiss-Prot
Match: O75940 (Survival of motor neuron-related-splicing factor 30 OS=Homo sapiens OX=9606 GN=SMNDC1 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.5e-07
Identity = 83/298 (27.85%), Postives = 128/298 (42.95%), Query Frame = 0


Query: 10  EELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQVIALTEELL 69
           E+LA  L++YK QLQQV   L  +  N + + ++K+L+E            VI LT++LL
Sbjct: 3   EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQE------------VIELTKDLL 62

Query: 70  STAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKETHRIFSSR- 129
           ST     ++ S+        S +  QP  +                VG K    ++S   
Sbjct: 63  STQPSETLASSD--------SFASTQPTHS--------------WKVGDK-CMAVWSEDG 122

Query: 130 --YDATI-EAHTVNG-FYVSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAEATKQAIK 189
             Y+A I E    NG   ++F G+GN              EV  LL  + + E  K    
Sbjct: 123 QCYEAEIEEIDEENGTAAITFAGYGN-------------AEVTPLLNLKPVEEGRK---- 182

Query: 190 RKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEVTQNKRQNA 249
                 A  D  ++ +  K  I        +  + KK  A K   R+++LE  +  ++  
Sbjct: 183 ------AKEDSGNKPMSKKEMI-------AQQREYKKKKALKKAQRIKELEQEREDQKVK 230

Query: 250 WQQFQS-AKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSG---KGLTEFQKREKH 299
           WQQF + A  K+KK     G+ + SIF SP+   GKVGV   G   K +T++Q   K+
Sbjct: 243 WQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKY 230

[Close]

BLAST of Lsi11G000990 vs. ExPASy Swiss-Prot
Match: Q3T045 (Survival of motor neuron-related-splicing factor 30 OS=Bos taurus OX=9913 GN=SMNDC1 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-06
Identity = 86/298 (28.86%), Postives = 129/298 (43.29%), Query Frame = 0


Query: 10  EELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQVIALTEELL 69
           E+LA  L++YK QLQQV   L  +  N + + ++K+L+E            VI LT++LL
Sbjct: 3   EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQE------------VIELTKDLL 62

Query: 70  STAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKETHRIFSSR- 129
           ST     ++ S     D+ AS    QP  +                VG K    I+S   
Sbjct: 63  STQPSETLASS-----DNFAS---TQPTHS--------------WKVGDK-CMAIWSEDG 122

Query: 130 --YDATI-EAHTVNG-FYVSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAEATKQAIK 189
             Y+A I E    NG   ++F G+GN              EV  LL  + + E  K    
Sbjct: 123 QCYEAEIEEIDEENGTAAITFAGYGN-------------AEVTPLLNLKPVEEGRK---- 182

Query: 190 RKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEVTQNKRQNA 249
                 A  D  ++ +  K  I        +  + KK  A K   R+++LE  +  ++  
Sbjct: 183 ------AKEDSGNKPMSKKEMI-------AQQREYKKKKALKKAQRIKELEQEREDQKVK 230

Query: 250 WQQFQS-AKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSG---KGLTEFQKREKH 299
           WQQF + A  K+KK     G+ + SIF SP+   GKVGV   G   K +T++Q   K+
Sbjct: 243 WQQFNNRAYSKNKK-----GQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKY 230

[Close]

BLAST of Lsi11G000990 vs. ExPASy TrEMBL
Match: A0A6J1K7R2 (survival of motor neuron-related-splicing factor 30 OS=Cucurbita maxima OX=3661 GN=LOC111493029 PE=4 SV=1)

HSP 1 Score: 482.6 bits (1241), Expect = 1.2e-132
Identity = 264/313 (84.35%), Postives = 277/313 (88.50%), Query Frame = 0


Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
           MQGGEDVS+EELA NLSTYKDQLQQVR+LLDDDP NSEYIDMEKELEE            
Sbjct: 1   MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE------------ 60

Query: 61  VIALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKE 120
           VIALTEELLSTAKQNEISGSNVETGDDSASISFQQ K N+M A + +        +GTK 
Sbjct: 61  VIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFP-IGTK- 120

Query: 121 THRIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAE 180
              ++S     YDATIEAHTVNGFYVS+DGWGNKEEVDPANVRTIQLEVNALLEAERMAE
Sbjct: 121 VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAE 180

Query: 181 ATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEVT 240
           ATKQAIKRKIAQAASVDFQSRNLPS+LRIEPDDPEDVKATKRKKIHAFKSKMR+EQLEVT
Sbjct: 181 ATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 240

Query: 241 QNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 300
           QNKRQNAWQQFQSAKGKSKKIGFFSGRK+ESIFKSPDDPNGKVGVTGSGKGLTEFQKREK
Sbjct: 241 QNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 299

Query: 301 HLHLKGATVEMDD 311
           HLHLKGA+VEMDD
Sbjct: 301 HLHLKGASVEMDD 299

[Close]

BLAST of Lsi11G000990 vs. ExPASy TrEMBL
Match: A0A6J1EY48 (survival of motor neuron-related-splicing factor 30 OS=Cucurbita moschata OX=3662 GN=LOC111439780 PE=4 SV=1)

HSP 1 Score: 482.6 bits (1241), Expect = 1.2e-132
Identity = 264/313 (84.35%), Postives = 277/313 (88.50%), Query Frame = 0


Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
           MQGGEDVS+EELA NLSTYKDQLQQVR+LLDDDP NSEYIDMEKELEE            
Sbjct: 1   MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE------------ 60

Query: 61  VIALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKE 120
           VIALTEELLSTAKQNEISGSNVETGDDSASISFQQ K N+M A + +        +GTK 
Sbjct: 61  VIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFP-IGTK- 120

Query: 121 THRIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAE 180
              ++S     YDATIEAHTVNGFYVS+DGWGNKEEVDPANVRTIQLEVNALLEAERMAE
Sbjct: 121 VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAE 180

Query: 181 ATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEVT 240
           ATKQAIKRKIAQAASVDFQSRNLPS+LRIEPDDPEDVKATKRKKIHAFKSKMR+EQLEVT
Sbjct: 181 ATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 240

Query: 241 QNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 300
           QNKRQNAWQQFQSAKGKSKKIGFFSGRK+ESIFKSPDDPNGKVGVTGSGKGLTEFQKREK
Sbjct: 241 QNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 299

Query: 301 HLHLKGATVEMDD 311
           HLHLKGA+VEMDD
Sbjct: 301 HLHLKGASVEMDD 299

[Close]

BLAST of Lsi11G000990 vs. ExPASy TrEMBL
Match: A0A6J1DPE2 (survival of motor neuron-related-splicing factor 30 OS=Momordica charantia OX=3673 GN=LOC111022290 PE=4 SV=1)

HSP 1 Score: 473.4 bits (1217), Expect = 7.3e-130
Identity = 263/317 (82.97%), Postives = 276/317 (87.07%), Query Frame = 0


Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
           MQGGEDVSIEELA+NLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEE            
Sbjct: 1   MQGGEDVSIEELASNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEE------------ 60

Query: 61  VIALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQH----V 120
           VI+LTEELL+TAKQNEISGSNVETGD+SASISF Q KE +M A      +L+  H    +
Sbjct: 61  VISLTEELLATAKQNEISGSNVETGDNSASISFLQSKETKMEAE-----SLSDHHEKFPI 120

Query: 121 GTKETHRIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLEVNALLEAE 180
           G+K    ++S     YDATIEAHTVNGFYVS+D WGNKEEVDPANVR IQ EVNALLEAE
Sbjct: 121 GSK-VQAVWSEDGEWYDATIEAHTVNGFYVSYDSWGNKEEVDPANVREIQQEVNALLEAE 180

Query: 181 RMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQ 240
           RMAEATKQAIKRKIAQAASVDFQSRNLP KLRIEPDDPEDVKATKRKKIHAFKSKMR+EQ
Sbjct: 181 RMAEATKQAIKRKIAQAASVDFQSRNLPPKLRIEPDDPEDVKATKRKKIHAFKSKMRIEQ 240

Query: 241 LEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQ 300
           LEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQ
Sbjct: 241 LEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQ 299

Query: 301 KREKHLHLKGATVEMDD 311
           KREKHLHLKGATVEMDD
Sbjct: 301 KREKHLHLKGATVEMDD 299

[Close]

BLAST of Lsi11G000990 vs. ExPASy TrEMBL
Match: A0A1S3CD96 (survival of motor neuron-related-splicing factor 30 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499374 PE=4 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 3.1e-120
Identity = 235/265 (88.68%), Postives = 244/265 (92.08%), Query Frame = 0


Query: 49  KHWTWAKVAVMQVIALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTS 108
           KHWTWAKVAVMQVIALTEELLSTAKQNE+SGSNVETGDDSASI FQQPKENEM A + + 
Sbjct: 12  KHWTWAKVAVMQVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQPKENEMEAGSMSD 71

Query: 109 LTLALQHVGTKETHRIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLE 168
                  +GTK    ++S     YDATIEAHTVNGFYVS+DGWGNKEEVDPANVRTIQLE
Sbjct: 72  YHEKFP-IGTK-VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLE 131

Query: 169 VNALLEAERMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAF 228
           VNALLEAERMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAF
Sbjct: 132 VNALLEAERMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAF 191

Query: 229 KSKMRVEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGS 288
           KSKMR+EQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGS
Sbjct: 192 KSKMRIEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGS 251

Query: 289 GKGLTEFQKREKHLHLKGATVEMDD 311
           GKGLTEFQKREKHLHLKGATVEMD+
Sbjct: 252 GKGLTEFQKREKHLHLKGATVEMDE 274

[Close]

BLAST of Lsi11G000990 vs. ExPASy TrEMBL
Match: A0A1S3CE07 (survival of motor neuron-related-splicing factor 30 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499374 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 2.3e-112
Identity = 224/259 (86.49%), Postives = 235/259 (90.73%), Query Frame = 0


Query: 55  KVAVMQVIALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQ 114
           K  + +VIALTEELLSTAKQNE+SGSNVETGDDSASI FQQPKENEM A + +       
Sbjct: 13  KKELEEVIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQPKENEMEAGSMSDYHEKFP 72

Query: 115 HVGTKETHRIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLEVNALLE 174
            +GTK    ++S     YDATIEAHTVNGFYVS+DGWGNKEEVDPANVRTIQLEVNALLE
Sbjct: 73  -IGTK-VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLE 132

Query: 175 AERMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRV 234
           AERMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMR+
Sbjct: 133 AERMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRI 192

Query: 235 EQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTE 294
           EQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTE
Sbjct: 193 EQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTE 252

Query: 295 FQKREKHLHLKGATVEMDD 311
           FQKREKHLHLKGATVEMD+
Sbjct: 253 FQKREKHLHLKGATVEMDE 269

[Close]

BLAST of Lsi11G000990 vs. NCBI nr
Match: KAG7032438.1 (Survival of motor neuron-related-splicing factor 30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 502.7 bits (1293), Expect = 2.3e-138
Identity = 274/325 (84.31%), Postives = 286/325 (88.00%), Query Frame = 0


Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEE------------ 60
           MQGGEDVS+EELA NLSTYKDQLQQVR+LLDDDP NSEYIDMEKELEE            
Sbjct: 1   MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEEVVYFCPPRYILT 60

Query: 61  KHWTWAKVAVMQVIALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTS 120
             WTWAKVAVMQVIALTEELLSTAKQNEISGSNVETGDDSASISFQQ K N+M A +   
Sbjct: 61  ATWTWAKVAVMQVIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMCD 120

Query: 121 LTLALQHVGTKETHRIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLE 180
                  +GTK    ++S     YDATIEAHTVNGFYVS+DGWGNKEEVDPANVRTIQLE
Sbjct: 121 YHEKFP-IGTK-VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLE 180

Query: 181 VNALLEAERMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAF 240
           VNALLEAERMAEATKQAIKRKIAQAASVDFQSRNLPS+LRIEPDDPEDVKATKRKKIHAF
Sbjct: 181 VNALLEAERMAEATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAF 240

Query: 241 KSKMRVEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGS 300
           KSKMR+EQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRK+ESIFKSPDDPNGKVGVTGS
Sbjct: 241 KSKMRIEQLEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGS 300

Query: 301 GKGLTEFQKREKHLHLKGATVEMDD 311
           GKGLTEFQKREKHLHLKGA+VEMDD
Sbjct: 301 GKGLTEFQKREKHLHLKGASVEMDD 323

[Close]

BLAST of Lsi11G000990 vs. NCBI nr
Match: XP_038876515.1 (survival of motor neuron-related-splicing factor 30 [Benincasa hispida])

HSP 1 Score: 487.3 bits (1253), Expect = 1.0e-133
Identity = 267/313 (85.30%), Postives = 277/313 (88.50%), Query Frame = 0


Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
           MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDP NSEYIDMEKELEE            
Sbjct: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPGNSEYIDMEKELEE------------ 60

Query: 61  VIALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKE 120
           VIALTEELLSTAKQNEI GSNVETGDDSASISF QPKENEM A + +        +G+K 
Sbjct: 61  VIALTEELLSTAKQNEIPGSNVETGDDSASISFHQPKENEMEAGSMSDYHEKFP-IGSK- 120

Query: 121 THRIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAE 180
              ++S     YDATIEAHTVNGFYVS+DGWGNKEEVDPANVR IQLEVNALLEAER+AE
Sbjct: 121 VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRAIQLEVNALLEAERVAE 180

Query: 181 ATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEVT 240
           ATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMR+EQLEVT
Sbjct: 181 ATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 240

Query: 241 QNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 300
           QNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREK
Sbjct: 241 QNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 299

Query: 301 HLHLKGATVEMDD 311
           HLHLKGATVEMD+
Sbjct: 301 HLHLKGATVEMDE 299

[Close]

BLAST of Lsi11G000990 vs. NCBI nr
Match: XP_004142808.1 (survival of motor neuron-related-splicing factor 30 isoform X1 [Cucumis sativus] >KGN51867.2 hypothetical protein Csa_008126 [Cucumis sativus])

HSP 1 Score: 484.6 bits (1246), Expect = 6.5e-133
Identity = 265/313 (84.66%), Postives = 276/313 (88.18%), Query Frame = 0


Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
           MQGGEDVSIEELANNLSTYKDQL QVRQLLDDDP NSEYIDMEKELEE            
Sbjct: 1   MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEE------------ 60

Query: 61  VIALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKE 120
           VIALTEELLSTAKQNE+SGSNVETGDDSASI FQQ KENEM A + +        +GTK 
Sbjct: 61  VIALTEELLSTAKQNEVSGSNVETGDDSASIGFQQSKENEMEAGSMSDYHEKFP-IGTK- 120

Query: 121 THRIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAE 180
              ++S     YDATIEAHTVNGFYVS+DGWGNKEEVDPANVRTIQLEVN LLEAER+AE
Sbjct: 121 VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNPLLEAERVAE 180

Query: 181 ATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEVT 240
           ATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMR+EQLEVT
Sbjct: 181 ATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 240

Query: 241 QNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 300
           QNKRQNAWQQFQ+AKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREK
Sbjct: 241 QNKRQNAWQQFQTAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 299

Query: 301 HLHLKGATVEMDD 311
           HLHLKGATVEMD+
Sbjct: 301 HLHLKGATVEMDE 299

[Close]

BLAST of Lsi11G000990 vs. NCBI nr
Match: XP_022933076.1 (survival of motor neuron-related-splicing factor 30 [Cucurbita moschata] >XP_022998367.1 survival of motor neuron-related-splicing factor 30 [Cucurbita maxima] >XP_023530530.1 survival of motor neuron-related-splicing factor 30 [Cucurbita pepo subsp. pepo] >KAG6601669.1 Survival of motor neuron-related-splicing factor 30, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 482.6 bits (1241), Expect = 2.5e-132
Identity = 264/313 (84.35%), Postives = 277/313 (88.50%), Query Frame = 0


Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
           MQGGEDVS+EELA NLSTYKDQLQQVR+LLDDDP NSEYIDMEKELEE            
Sbjct: 1   MQGGEDVSMEELATNLSTYKDQLQQVRELLDDDPGNSEYIDMEKELEE------------ 60

Query: 61  VIALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKE 120
           VIALTEELLSTAKQNEISGSNVETGDDSASISFQQ K N+M A + +        +GTK 
Sbjct: 61  VIALTEELLSTAKQNEISGSNVETGDDSASISFQQTKGNKMEAESMSDYHEKFP-IGTK- 120

Query: 121 THRIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAE 180
              ++S     YDATIEAHTVNGFYVS+DGWGNKEEVDPANVRTIQLEVNALLEAERMAE
Sbjct: 121 VQAVWSEDGEWYDATIEAHTVNGFYVSYDGWGNKEEVDPANVRTIQLEVNALLEAERMAE 180

Query: 181 ATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEVT 240
           ATKQAIKRKIAQAASVDFQSRNLPS+LRIEPDDPEDVKATKRKKIHAFKSKMR+EQLEVT
Sbjct: 181 ATKQAIKRKIAQAASVDFQSRNLPSRLRIEPDDPEDVKATKRKKIHAFKSKMRIEQLEVT 240

Query: 241 QNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 300
           QNKRQNAWQQFQSAKGKSKKIGFFSGRK+ESIFKSPDDPNGKVGVTGSGKGLTEFQKREK
Sbjct: 241 QNKRQNAWQQFQSAKGKSKKIGFFSGRKKESIFKSPDDPNGKVGVTGSGKGLTEFQKREK 299

Query: 301 HLHLKGATVEMDD 311
           HLHLKGA+VEMDD
Sbjct: 301 HLHLKGASVEMDD 299

[Close]

BLAST of Lsi11G000990 vs. NCBI nr
Match: XP_022155149.1 (survival of motor neuron-related-splicing factor 30 [Momordica charantia])

HSP 1 Score: 473.4 bits (1217), Expect = 1.5e-129
Identity = 263/317 (82.97%), Postives = 276/317 (87.07%), Query Frame = 0


Query: 1   MQGGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQ 60
           MQGGEDVSIEELA+NLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEE            
Sbjct: 1   MQGGEDVSIEELASNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEE------------ 60

Query: 61  VIALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQH----V 120
           VI+LTEELL+TAKQNEISGSNVETGD+SASISF Q KE +M A      +L+  H    +
Sbjct: 61  VISLTEELLATAKQNEISGSNVETGDNSASISFLQSKETKMEAE-----SLSDHHEKFPI 120

Query: 121 GTKETHRIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLEVNALLEAE 180
           G+K    ++S     YDATIEAHTVNGFYVS+D WGNKEEVDPANVR IQ EVNALLEAE
Sbjct: 121 GSK-VQAVWSEDGEWYDATIEAHTVNGFYVSYDSWGNKEEVDPANVREIQQEVNALLEAE 180

Query: 181 RMAEATKQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQ 240
           RMAEATKQAIKRKIAQAASVDFQSRNLP KLRIEPDDPEDVKATKRKKIHAFKSKMR+EQ
Sbjct: 181 RMAEATKQAIKRKIAQAASVDFQSRNLPPKLRIEPDDPEDVKATKRKKIHAFKSKMRIEQ 240

Query: 241 LEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQ 300
           LEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQ
Sbjct: 241 LEVTQNKRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQ 299

Query: 301 KREKHLHLKGATVEMDD 311
           KREKHLHLKGATVEMDD
Sbjct: 301 KREKHLHLKGATVEMDD 299

[Close]

BLAST of Lsi11G000990 vs. TAIR 10
Match: AT2G02570.1 (nucleic acid binding;RNA binding )

HSP 1 Score: 334.3 bits (856), Expect = 1.0e-91
Identity = 188/311 (60.45%), Postives = 231/311 (74.28%), Query Frame = 0


Query: 3   GGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQVI 62
           G E++SIE+LA+++STYK+QL+QVRQLL +DP NSEY DMEKEL+E            VI
Sbjct: 4   GVEELSIEQLASSISTYKEQLEQVRQLLSEDPRNSEYADMEKELKE------------VI 63

Query: 63  ALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKETH 122
           ALTEE+L+TAKQNEIS S+     ++   S       E     +  +      VGTK   
Sbjct: 64  ALTEEVLATAKQNEISLSDAGVSAEATPGSPDLEGAWEKTGLRNDPIHEGKFPVGTK-VQ 123

Query: 123 RIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAEAT 182
            +FS     YDATIEAHT NG++V++D WGNKEEVDP NVR I  E NA++EAER+A+AT
Sbjct: 124 AVFSDDGEWYDATIEAHTANGYFVAYDEWGNKEEVDPDNVRPI--EQNAIVEAERLAQAT 183

Query: 183 KQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEVTQN 242
           K A+KRKI +AAS D+Q++ LP+KL+I+P+DPEDVK  KRKKIHAFKSK R EQLEV QN
Sbjct: 184 KNALKRKIEKAASSDYQTKTLPAKLKIDPNDPEDVKIAKRKKIHAFKSKARFEQLEVVQN 243

Query: 243 KRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREKHL 302
           K+QN WQQFQ+ K K+KK+GFF+GRK+ESIFKSP+DP GKVGVTGSGKGLT+FQKREKHL
Sbjct: 244 KKQNDWQQFQTTKAKTKKVGFFTGRKKESIFKSPEDPFGKVGVTGSGKGLTDFQKREKHL 299

Query: 303 HLKGATVEMDD 311
           HLK    E  D
Sbjct: 304 HLKSGNAEGTD 299

[Close]

BLAST of Lsi11G000990 vs. TAIR 10
Match: AT2G02570.2 (nucleic acid binding;RNA binding )

HSP 1 Score: 334.3 bits (856), Expect = 1.0e-91
Identity = 188/311 (60.45%), Postives = 231/311 (74.28%), Query Frame = 0


Query: 3   GGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQVI 62
           G E++SIE+LA+++STYK+QL+QVRQLL +DP NSEY DMEKEL+E            VI
Sbjct: 4   GVEELSIEQLASSISTYKEQLEQVRQLLSEDPRNSEYADMEKELKE------------VI 63

Query: 63  ALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKETH 122
           ALTEE+L+TAKQNEIS S+     ++   S       E     +  +      VGTK   
Sbjct: 64  ALTEEVLATAKQNEISLSDAGVSAEATPGSPDLEGAWEKTGLRNDPIHEGKFPVGTK-VQ 123

Query: 123 RIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAEAT 182
            +FS     YDATIEAHT NG++V++D WGNKEEVDP NVR I  E NA++EAER+A+AT
Sbjct: 124 AVFSDDGEWYDATIEAHTANGYFVAYDEWGNKEEVDPDNVRPI--EQNAIVEAERLAQAT 183

Query: 183 KQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEVTQN 242
           K A+KRKI +AAS D+Q++ LP+KL+I+P+DPEDVK  KRKKIHAFKSK R EQLEV QN
Sbjct: 184 KNALKRKIEKAASSDYQTKTLPAKLKIDPNDPEDVKIAKRKKIHAFKSKARFEQLEVVQN 243

Query: 243 KRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREKHL 302
           K+QN WQQFQ+ K K+KK+GFF+GRK+ESIFKSP+DP GKVGVTGSGKGLT+FQKREKHL
Sbjct: 244 KKQNDWQQFQTTKAKTKKVGFFTGRKKESIFKSPEDPFGKVGVTGSGKGLTDFQKREKHL 299

Query: 303 HLKGATVEMDD 311
           HLK    E  D
Sbjct: 304 HLKSGNAEGTD 299

[Close]

BLAST of Lsi11G000990 vs. TAIR 10
Match: AT2G02570.4 (nucleic acid binding;RNA binding )

HSP 1 Score: 334.3 bits (856), Expect = 1.0e-91
Identity = 188/311 (60.45%), Postives = 231/311 (74.28%), Query Frame = 0


Query: 3   GGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQVI 62
           G E++SIE+LA+++STYK+QL+QVRQLL +DP NSEY DMEKEL+E            VI
Sbjct: 4   GVEELSIEQLASSISTYKEQLEQVRQLLSEDPRNSEYADMEKELKE------------VI 63

Query: 63  ALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKETH 122
           ALTEE+L+TAKQNEIS S+     ++   S       E     +  +      VGTK   
Sbjct: 64  ALTEEVLATAKQNEISLSDAGVSAEATPGSPDLEGAWEKTGLRNDPIHEGKFPVGTK-VQ 123

Query: 123 RIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAEAT 182
            +FS     YDATIEAHT NG++V++D WGNKEEVDP NVR I  E NA++EAER+A+AT
Sbjct: 124 AVFSDDGEWYDATIEAHTANGYFVAYDEWGNKEEVDPDNVRPI--EQNAIVEAERLAQAT 183

Query: 183 KQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEVTQN 242
           K A+KRKI +AAS D+Q++ LP+KL+I+P+DPEDVK  KRKKIHAFKSK R EQLEV QN
Sbjct: 184 KNALKRKIEKAASSDYQTKTLPAKLKIDPNDPEDVKIAKRKKIHAFKSKARFEQLEVVQN 243

Query: 243 KRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREKHL 302
           K+QN WQQFQ+ K K+KK+GFF+GRK+ESIFKSP+DP GKVGVTGSGKGLT+FQKREKHL
Sbjct: 244 KKQNDWQQFQTTKAKTKKVGFFTGRKKESIFKSPEDPFGKVGVTGSGKGLTDFQKREKHL 299

Query: 303 HLKGATVEMDD 311
           HLK    E  D
Sbjct: 304 HLKSGNAEGTD 299

[Close]

BLAST of Lsi11G000990 vs. TAIR 10
Match: AT2G02570.3 (nucleic acid binding;RNA binding )

HSP 1 Score: 308.9 bits (790), Expect = 4.6e-84
Identity = 178/311 (57.23%), Postives = 221/311 (71.06%), Query Frame = 0


Query: 3   GGEDVSIEELANNLSTYKDQLQQVRQLLDDDPSNSEYIDMEKELEEKHWTWAKVAVMQVI 62
           G E++SIE+LA+++STYK+QL+QVRQLL +DP NSEY DMEKEL+E            VI
Sbjct: 4   GVEELSIEQLASSISTYKEQLEQVRQLLSEDPRNSEYADMEKELKE------------VI 63

Query: 63  ALTEELLSTAKQNEISGSNVETGDDSASISFQQPKENEMFARTSTSLTLALQHVGTKETH 122
           ALTEE+L+TAKQNEIS S+     ++   S       E     +  +      VGTK   
Sbjct: 64  ALTEEVLATAKQNEISLSDAGVSAEATPGSPDLEGAWEKTGLRNDPIHEGKFPVGTK-VQ 123

Query: 123 RIFSSR---YDATIEAHTVNGFYVSFDGWGNKEEVDPANVRTIQLEVNALLEAERMAEAT 182
            +FS     YDATIEAHT NG++V++D WGNKEEVDP NVR I  E NA++EAER+A+AT
Sbjct: 124 AVFSDDGEWYDATIEAHTANGYFVAYDEWGNKEEVDPDNVRPI--EQNAIVEAERLAQAT 183

Query: 183 KQAIKRKIAQAASVDFQSRNLPSKLRIEPDDPEDVKATKRKKIHAFKSKMRVEQLEVTQN 242
           K A+KRKI +AAS D+Q++ LP+KL+I+P+DPEDVK  KRKKIH            V QN
Sbjct: 184 KNALKRKIEKAASSDYQTKTLPAKLKIDPNDPEDVKIAKRKKIH------------VVQN 243

Query: 243 KRQNAWQQFQSAKGKSKKIGFFSGRKRESIFKSPDDPNGKVGVTGSGKGLTEFQKREKHL 302
           K+QN WQQFQ+ K K+KK+GFF+GRK+ESIFKSP+DP GKVGVTGSGKGLT+FQKREKHL
Sbjct: 244 KKQNDWQQFQTTKAKTKKVGFFTGRKKESIFKSPEDPFGKVGVTGSGKGLTDFQKREKHL 287

Query: 303 HLKGATVEMDD 311
           HLK    E  D
Sbjct: 304 HLKSGNAEGTD 287

The following BLAST results are available for this feature:

BLAST of Lsi11G000990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7ZV80	2.6e-07	26.33	Survival of motor neuron-related-splicing factor 30 OS=Danio rerio OX=7955 GN=sm...	[more]
Q6DEY1	2.6e-07	28.04	Survival of motor neuron-related-splicing factor 30 OS=Xenopus tropicalis OX=836...	[more]
Q5R591	5.7e-07	28.19	Survival of motor neuron-related-splicing factor 30 OS=Pongo abelii OX=9601 GN=S...	[more]
O75940	7.5e-07	27.85	Survival of motor neuron-related-splicing factor 30 OS=Homo sapiens OX=9606 GN=S...	[more]
Q3T045	1.7e-06	28.86	Survival of motor neuron-related-splicing factor 30 OS=Bos taurus OX=9913 GN=SMN...	[more]

BLAST of Lsi11G000990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K7R2	1.2e-132	84.35	survival of motor neuron-related-splicing factor 30 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1EY48	1.2e-132	84.35	survival of motor neuron-related-splicing factor 30 OS=Cucurbita moschata OX=366...	[more]
A0A6J1DPE2	7.3e-130	82.97	survival of motor neuron-related-splicing factor 30 OS=Momordica charantia OX=36...	[more]
A0A1S3CD96	3.1e-120	88.68	survival of motor neuron-related-splicing factor 30 isoform X1 OS=Cucumis melo O...	[more]
A0A1S3CE07	2.3e-112	86.49	survival of motor neuron-related-splicing factor 30 isoform X2 OS=Cucumis melo O...	[more]

BLAST of Lsi11G000990 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032438.1	2.3e-138	84.31	Survival of motor neuron-related-splicing factor 30 [Cucurbita argyrosperma subs...	[more]
XP_038876515.1	1.0e-133	85.30	survival of motor neuron-related-splicing factor 30 [Benincasa hispida]	[more]
XP_004142808.1	6.5e-133	84.66	survival of motor neuron-related-splicing factor 30 isoform X1 [Cucumis sativus]...	[more]
XP_022933076.1	2.5e-132	84.35	survival of motor neuron-related-splicing factor 30 [Cucurbita moschata] >XP_022...	[more]
XP_022155149.1	1.5e-129	82.97	survival of motor neuron-related-splicing factor 30 [Momordica charantia]	[more]

BLAST of Lsi11G000990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02570.1	1.0e-91	60.45	nucleic acid binding;RNA binding	[more]
AT2G02570.2	1.0e-91	60.45	nucleic acid binding;RNA binding	[more]
AT2G02570.4	1.0e-91	60.45	nucleic acid binding;RNA binding	[more]
AT2G02570.3	4.6e-84	57.23	nucleic acid binding;RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 169..189
None	No IPR available	COILS	Coil	Coil	coord: 9..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 267..287
None	No IPR available	PANTHER	PTHR13681:SF32	BNAA06G34090D PROTEIN	coord: 1..303
None	No IPR available	PANTHER	PTHR13681	SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED	coord: 1..303
IPR002999	Tudor domain	CDD	cd04508	TUDOR	coord: 129..160 e-value: 0.00452599 score: 32.57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G000990.1	Lsi11G000990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding