Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGAAAGCCGCCAAGAAGAAACTTAAATTCTGGTCCAAGAACAAGAAGCCAAAGAAAACCCACAATCACTACCATTTCCCTCCGCCGCCCTGCCATTGCTGCACTTGCAATTGCTCCTCCGCGACCCAGCCCTCAGCTCCACCACTTCCGCCATGGCTAGACGATCGGACCTTTCTGCCGCCTTCAACGGAATCGGAACAGCTGGACAGAGCCGAAATCACCGCGCCGCTTGTGGCCAGTCAGTCGTACCAGCAATACTTGGCGCCGGAGCCGGTGTACGGAGTTCCGATCATTGTGCAAACAGAAAGCAGAAGAGAGAAATGGAGAAGCTTCAGGGTTTCCGGATGCATTGGTGATTTGGGGATAAAGTTAATTGGATGCTTCTGCCCCTGTTTTCGCATTCCACAACCATACTACATACCAAAGTAA
mRNA sequence
ATGCTGAAAGCCGCCAAGAAGAAACTTAAATTCTGGTCCAAGAACAAGAAGCCAAAGAAAACCCACAATCACTACCATTTCCCTCCGCCGCCCTGCCATTGCTGCACTTGCAATTGCTCCTCCGCGACCCAGCCCTCAGCTCCACCACTTCCGCCATGGCTAGACGATCGGACCTTTCTGCCGCCTTCAACGGAATCGGAACAGCTGGACAGAGCCGAAATCACCGCGCCGCTTGTGGCCAGTCAGTCGTACCAGCAATACTTGGCGCCGGAGCCGGTGTACGGAGTTCCGATCATTGTGCAAACAGAAAGCAGAAGAGAGAAATGGAGAAGCTTCAGGGTTTCCGGATGCATTGGTGATTTGGGGATAAAGTTAATTGGATGCTTCTGCCCCTGTTTTCGCATTCCACAACCATACTACATACCAAAGTAA
Coding sequence (CDS)
ATGCTGAAAGCCGCCAAGAAGAAACTTAAATTCTGGTCCAAGAACAAGAAGCCAAAGAAAACCCACAATCACTACCATTTCCCTCCGCCGCCCTGCCATTGCTGCACTTGCAATTGCTCCTCCGCGACCCAGCCCTCAGCTCCACCACTTCCGCCATGGCTAGACGATCGGACCTTTCTGCCGCCTTCAACGGAATCGGAACAGCTGGACAGAGCCGAAATCACCGCGCCGCTTGTGGCCAGTCAGTCGTACCAGCAATACTTGGCGCCGGAGCCGGTGTACGGAGTTCCGATCATTGTGCAAACAGAAAGCAGAAGAGAGAAATGGAGAAGCTTCAGGGTTTCCGGATGCATTGGTGATTTGGGGATAAAGTTAATTGGATGCTTCTGCCCCTGTTTTCGCATTCCACAACCATACTACATACCAAAGTAA
Protein sequence
MLKAAKKKLKFWSKNKKPKKTHNHYHFPPPPCHCCTCNCSSATQPSAPPLPPWLDDRTFLPPSTESEQLDRAEITAPLVASQSYQQYLAPEPVYGVPIIVQTESRREKWRSFRVSGCIGDLGIKLIGCFCPCFRIPQPYYIPK
Homology
BLAST of Lsi11G000950 vs. ExPASy TrEMBL
Match:
A0A6J1EYP6 (uncharacterized protein LOC111439771 OS=Cucurbita moschata OX=3662 GN=LOC111439771 PE=4 SV=1)
HSP 1 Score: 194.9 bits (494), Expect = 2.3e-46
Identity = 97/139 (69.78%), Postives = 111/139 (79.86%), Query Frame = 0
Query: 1 MLKAAKKKLKFWSKNKKPKKTHNHYHFPPPPCHCCTCNCSSATQPSAPPLPPWLDDRTFL 60
MLKAAKKKLKFWS++KK KK N F PPPCHCCTC+CSSA QPSAPPLPPWLDDR F
Sbjct: 1 MLKAAKKKLKFWSRSKKRKKIPNPNDF-PPPCHCCTCHCSSAIQPSAPPLPPWLDDRIFP 60
Query: 61 PPSTESEQLDRAEITAPLVASQSYQQYLAPEPVYGVPIIVQTESRREKWRS--FRVSGCI 120
P SE + AEI APLVA+ YQ Y+ P+PVYGVPIIVQT+SRR+ RS F VSGC+
Sbjct: 61 P----SEHPEEAEIAAPLVAAPLYQHYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCV 120
Query: 121 GDLGIKLIGCFCPCFRIPQ 138
G+LGI++IGCFCPCFR P+
Sbjct: 121 GELGIRIIGCFCPCFRTPE 134
BLAST of Lsi11G000950 vs. ExPASy TrEMBL
Match:
A0A5A7UIP5 (AUX/IAA protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00680 PE=4 SV=1)
HSP 1 Score: 128.6 bits (322), Expect = 2.0e-26
Identity = 86/155 (55.48%), Postives = 101/155 (65.16%), Query Frame = 0
Query: 1 MLKAAKKKLK-FWS--KNKKPKKTHNHYHFPPPPCHCCTCNCSSAT----QPSAPPLPPW 60
MLKA KKKLK WS K KKP KT + + +CC+C+CSS++ QPSAPPLPPW
Sbjct: 1 MLKATKKKLKGLWSKMKKKKPNKTQTNCY-----QYCCSCHCSSSSHLHHQPSAPPLPPW 60
Query: 61 L-DDRTFLPPSTES--EQLDRAEITAPLVASQ-SYQQYLAPEPVYGVPIIVQTESRR-EK 120
L +D TFLPP T+S E DRA+ +V +Q SYQQYL EPVYGVPIIV+TESRR +K
Sbjct: 61 LNEDPTFLPPPTQSQFEHPDRAD---GMVTNQWSYQQYLVAEPVYGVPIIVKTESRRDQK 120
Query: 121 WRSFRVSGCIGDLGIKLIGCFCPCFRIPQP-YYIP 143
W+ IKL CFCPCF I Q YYIP
Sbjct: 121 WKRL----------IKLFDCFCPCFGITQQLYYIP 137
BLAST of Lsi11G000950 vs. ExPASy TrEMBL
Match:
A0A0A0KJG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G077760 PE=4 SV=1)
HSP 1 Score: 125.2 bits (313), Expect = 2.2e-25
Identity = 88/163 (53.99%), Postives = 100/163 (61.35%), Query Frame = 0
Query: 1 MLKAAKKKLK-FWS------KNKKPKKTH-NHYHFPPPPCHCCTCNCSSAT------QPS 60
MLKA KKKLK WS K KKP +T N Y + CC C+CSS+T QPS
Sbjct: 24 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQY------CCICHCSSSTHQHNQQQPS 83
Query: 61 APPLPPWLDDR-TFLPPSTES--EQLDRA-EITAPLVASQ-SYQQYLAPEPVYGVPIIVQ 120
APPLP WL+D TFLPPST+S E D A E+ PLVA+Q SYQQYL EPVYGVPIIV+
Sbjct: 84 APPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVE 143
Query: 121 TES-RREKWRSFRVSGCIGDLGIKLIGCFCPCFRIPQP-YYIP 143
TES R +KW+ IKL C CPCF I Q YY+P
Sbjct: 144 TESGRGQKWKRL----------IKLFECLCPCFGITQQLYYVP 170
BLAST of Lsi11G000950 vs. ExPASy TrEMBL
Match:
A0A5N6QN08 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004447 PE=4 SV=1)
HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 70/162 (43.21%), Postives = 91/162 (56.17%), Query Frame = 0
Query: 1 MLKAAKKKLKFWSKNKKPKKTHNHYHFPPPPCHCCTCNCSSATQPSAPPLPPWLD----- 60
M+KA KKLKFWS+ K+ KKT + Y+ PPPPCHC +C S TQPSAPPLPPWLD
Sbjct: 3 MMKAV-KKLKFWSRKKRKKKTQDPYYLPPPPCHCYH-SCYS-TQPSAPPLPPWLDLEQTH 62
Query: 61 DRTFLPPS----------------------TESEQLDRAEITAPLVASQSYQQYLAPEPV 120
D+ P+ TE+ + + V++ SYQQY+AP PV
Sbjct: 63 DQAIPEPALQPVPDLSYPNQARVPSIQEVVTETSPIMYPTLPDAAVSTPSYQQYMAPNPV 122
Query: 121 YGVPIIVQTESRREKWRSFRVSGCIGDLGIKLIGCFCPCFRI 136
YG+P++V +RRE+ F GC+ + GI L CFCPC I
Sbjct: 123 YGIPVVVGETARRERRAGF--FGCVVNFGIHLFRCFCPCLSI 159
BLAST of Lsi11G000950 vs. ExPASy TrEMBL
Match:
A0A6P6GE81 (formin-like protein 5 OS=Ziziphus jujuba OX=326968 GN=LOC112492589 PE=4 SV=1)
HSP 1 Score: 116.7 bits (291), Expect = 8.0e-23
Identity = 80/170 (47.06%), Postives = 97/170 (57.06%), Query Frame = 0
Query: 1 MLKAAKKKLKFWSKNKKPKKTHNHYHFPPPP-----------CHCCTCNC-SSATQPSAP 60
M+KA KKLKFWS+ K+ KKTH Y+ PPPP HCC C+C SS+TQPSAP
Sbjct: 28 MIKAV-KKLKFWSRKKRKKKTHQSYYSPPPPPYPPPPPPPPRSHCC-CSCYSSSTQPSAP 87
Query: 61 PLPP-WLDD----RTFL-----PPSTES--------EQLDRAEITAPLV-----ASQSYQ 120
PLPP W D TFL PP+ ES E++ T PL ++ SYQ
Sbjct: 88 PLPPSWFDSDLTHDTFLGPGVHPPAPESSFPNPNQPEEIVLDSTTTPLYPTLPESNSSYQ 147
Query: 121 QYLAPEPVYGVPIIVQTESRREKWRSFRVSGCIGDLGIKLIGCFCPCFRI 136
QY+ P PVYG+P V SRREK S + GC+ + GI LI CF PC+RI
Sbjct: 148 QYMVPNPVYGIP--VSQTSRREK--SGGIFGCVVNFGIHLIRCFVPCYRI 191
BLAST of Lsi11G000950 vs. NCBI nr
Match:
KAG6601672.1 (hypothetical protein SDJN03_06905, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 198.4 bits (503), Expect = 4.3e-47
Identity = 99/142 (69.72%), Postives = 113/142 (79.58%), Query Frame = 0
Query: 1 MLKAAKKKLKFWSKNKKPKKTHNHYHF---PPPPCHCCTCNCSSATQPSAPPLPPWLDDR 60
MLKAAKKKLKFWS++KK KK + F PPPPCHCCTC+CSSA QPSAPPLPPWLDDR
Sbjct: 1 MLKAAKKKLKFWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSSAIQPSAPPLPPWLDDR 60
Query: 61 TFLPPSTESEQLDRAEITAPLVASQSYQQYLAPEPVYGVPIIVQTESRREKWRS--FRVS 120
F PP E + AEI APLVA+ YQQY+ P+PVYGVPIIVQT+SRR+ RS F VS
Sbjct: 61 IFPPP----EHPEEAEIAAPLVAAPLYQQYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVS 120
Query: 121 GCIGDLGIKLIGCFCPCFRIPQ 138
GC+GDLGI++IGCFCPCFR P+
Sbjct: 121 GCVGDLGIRIIGCFCPCFRTPK 138
BLAST of Lsi11G000950 vs. NCBI nr
Match:
XP_022933064.1 (uncharacterized protein LOC111439771 [Cucurbita moschata])
HSP 1 Score: 194.9 bits (494), Expect = 4.8e-46
Identity = 97/139 (69.78%), Postives = 111/139 (79.86%), Query Frame = 0
Query: 1 MLKAAKKKLKFWSKNKKPKKTHNHYHFPPPPCHCCTCNCSSATQPSAPPLPPWLDDRTFL 60
MLKAAKKKLKFWS++KK KK N F PPPCHCCTC+CSSA QPSAPPLPPWLDDR F
Sbjct: 1 MLKAAKKKLKFWSRSKKRKKIPNPNDF-PPPCHCCTCHCSSAIQPSAPPLPPWLDDRIFP 60
Query: 61 PPSTESEQLDRAEITAPLVASQSYQQYLAPEPVYGVPIIVQTESRREKWRS--FRVSGCI 120
P SE + AEI APLVA+ YQ Y+ P+PVYGVPIIVQT+SRR+ RS F VSGC+
Sbjct: 61 P----SEHPEEAEIAAPLVAAPLYQHYMDPDPVYGVPIIVQTDSRRDGSRSRRFAVSGCV 120
Query: 121 GDLGIKLIGCFCPCFRIPQ 138
G+LGI++IGCFCPCFR P+
Sbjct: 121 GELGIRIIGCFCPCFRTPE 134
BLAST of Lsi11G000950 vs. NCBI nr
Match:
XP_022155153.1 (uncharacterized protein LOC111022295 [Momordica charantia])
HSP 1 Score: 129.8 bits (325), Expect = 1.9e-26
Identity = 76/147 (51.70%), Postives = 93/147 (63.27%), Query Frame = 0
Query: 1 MLKAAKKKLKFWSKNKKPKKTHNHYHFPPPPCHCCTCNCS-SATQPSAPPLPPWLDDRTF 60
MLKAA KKLKFWSK+KK +KT + + PPPP C+C+CS SA +PSAPPLPPWLDDRT
Sbjct: 1 MLKAA-KKLKFWSKDKKRRKTRDSSYLPPPPPPYCSCSCSYSAIRPSAPPLPPWLDDRTL 60
Query: 61 L----PPSTESEQLDRAEITAPLVASQSYQQYLAPEPVYGVPIIVQTESRREKWRSFRVS 120
L PP+ + A+ SYQQY AP PVYG+P IV+ S R + RS
Sbjct: 61 LLQSEPPAATGVE-----------AAASYQQYTAPNPVYGLP-IVEMGSIRTRERSL--- 120
Query: 121 GCIGDLGIKLIGCFCPCFRIPQPYYIP 143
DLG +LI CFCPC + + YY+P
Sbjct: 121 --FTDLGARLIRCFCPCLHVREAYYLP 129
BLAST of Lsi11G000950 vs. NCBI nr
Match:
KAA0054146.1 (AUX/IAA protein [Cucumis melo var. makuwa])
HSP 1 Score: 128.6 bits (322), Expect = 4.2e-26
Identity = 86/155 (55.48%), Postives = 101/155 (65.16%), Query Frame = 0
Query: 1 MLKAAKKKLK-FWS--KNKKPKKTHNHYHFPPPPCHCCTCNCSSAT----QPSAPPLPPW 60
MLKA KKKLK WS K KKP KT + + +CC+C+CSS++ QPSAPPLPPW
Sbjct: 1 MLKATKKKLKGLWSKMKKKKPNKTQTNCY-----QYCCSCHCSSSSHLHHQPSAPPLPPW 60
Query: 61 L-DDRTFLPPSTES--EQLDRAEITAPLVASQ-SYQQYLAPEPVYGVPIIVQTESRR-EK 120
L +D TFLPP T+S E DRA+ +V +Q SYQQYL EPVYGVPIIV+TESRR +K
Sbjct: 61 LNEDPTFLPPPTQSQFEHPDRAD---GMVTNQWSYQQYLVAEPVYGVPIIVKTESRRDQK 120
Query: 121 WRSFRVSGCIGDLGIKLIGCFCPCFRIPQP-YYIP 143
W+ IKL CFCPCF I Q YYIP
Sbjct: 121 WKRL----------IKLFDCFCPCFGITQQLYYIP 137
BLAST of Lsi11G000950 vs. NCBI nr
Match:
KGN49708.1 (hypothetical protein Csa_018344 [Cucumis sativus])
HSP 1 Score: 125.2 bits (313), Expect = 4.6e-25
Identity = 88/163 (53.99%), Postives = 100/163 (61.35%), Query Frame = 0
Query: 1 MLKAAKKKLK-FWS------KNKKPKKTH-NHYHFPPPPCHCCTCNCSSAT------QPS 60
MLKA KKKLK WS K KKP +T N Y + CC C+CSS+T QPS
Sbjct: 24 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQY------CCICHCSSSTHQHNQQQPS 83
Query: 61 APPLPPWLDDR-TFLPPSTES--EQLDRA-EITAPLVASQ-SYQQYLAPEPVYGVPIIVQ 120
APPLP WL+D TFLPPST+S E D A E+ PLVA+Q SYQQYL EPVYGVPIIV+
Sbjct: 84 APPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVE 143
Query: 121 TES-RREKWRSFRVSGCIGDLGIKLIGCFCPCFRIPQP-YYIP 143
TES R +KW+ IKL C CPCF I Q YY+P
Sbjct: 144 TESGRGQKWKRL----------IKLFECLCPCFGITQQLYYVP 170
BLAST of Lsi11G000950 vs. TAIR 10
Match:
AT4G24265.1 (unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 64.7 bits (156), Expect = 6.9e-11
Identity = 48/148 (32.43%), Postives = 68/148 (45.95%), Query Frame = 0
Query: 7 KKLKFWSKNKKPKKTHNHYHFPPPPCHCCTCNCSSA-----TQPSAPPLPPWLDD-RTFL 66
KKL FWS+ K+ +K P H C+C SS +P+APPLP W D+ R+
Sbjct: 2 KKLTFWSRKKRKRK-----QACPSQPHHCSCEYSSTAVAVLVEPTAPPLPYWFDETRSLC 61
Query: 67 PPSTES----------EQLDRAEITAPLVAS-------QSYQQYLAPEPVYGVPIIVQTE 126
PP T S +Q + PL++ QSYQQY+ P P V +
Sbjct: 62 PPETSSFPWTTHHLPHQQEETIVEATPLLSQVSDLRIYQSYQQYMVPNPTSNVHFVEPAT 121
Query: 127 SRREKWRSFRVSGCIGDLGIKLIGCFCP 132
++ RS + GC+ +L L+ CF P
Sbjct: 122 AK----RSVGIFGCVIELSSSLVRCFIP 140
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1EYP6 | 2.3e-46 | 69.78 | uncharacterized protein LOC111439771 OS=Cucurbita moschata OX=3662 GN=LOC1114397... | [more] |
A0A5A7UIP5 | 2.0e-26 | 55.48 | AUX/IAA protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G0068... | [more] |
A0A0A0KJG0 | 2.2e-25 | 53.99 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G077760 PE=4 SV=1 | [more] |
A0A5N6QN08 | 1.6e-23 | 43.21 | Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004447 PE=4 SV=1 | [more] |
A0A6P6GE81 | 8.0e-23 | 47.06 | formin-like protein 5 OS=Ziziphus jujuba OX=326968 GN=LOC112492589 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAG6601672.1 | 4.3e-47 | 69.72 | hypothetical protein SDJN03_06905, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022933064.1 | 4.8e-46 | 69.78 | uncharacterized protein LOC111439771 [Cucurbita moschata] | [more] |
XP_022155153.1 | 1.9e-26 | 51.70 | uncharacterized protein LOC111022295 [Momordica charantia] | [more] |
KAA0054146.1 | 4.2e-26 | 55.48 | AUX/IAA protein [Cucumis melo var. makuwa] | [more] |
KGN49708.1 | 4.6e-25 | 53.99 | hypothetical protein Csa_018344 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
AT4G24265.1 | 6.9e-11 | 32.43 | unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacter... | [more] |