Lsi11G000540 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi11G000540
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCytochrome c
Locationchr11: 625140 .. 629319 (+)
RNA-Seq ExpressionLsi11G000540
SyntenyLsi11G000540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTATATAAAAAAGCAAAATACAAAGAATAGCTTCTCCATCCTTCTACAAACACTGCGAACCCTAGCCCTCAGATCTGAACGCCACCTCATTCTTACGCCATGGCGAGCTTTAACGAAGCCCCTCCCGGCAATTCCAAAGCTGGAGAGAAGATCTTCAAGACCAAATGCGCTCAGTGCCACACTGTCGACAAAGGGGCTGGTCACAAGCAAGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTAGCATTTCTTATTCATATCTCTGAATTTCTTGCGATTGGATATCATACCCTAGAGATCTTTCCGTTTCTGTTTGTAATCTGAACGTATTCGATCGTCTTCGGGGATTGTGATGCTGATTTAATCTAGGGCTGAACCGATCTGATTGTTCTCTATCTCTTTTCCCCAACGGACTTTAGGAAGCTAATCGTTGGTATCGGCCTTGATGAAAATTTGCCGTGGATTCCTTGCCCTTTTGTGAGAAGGAAACCCCCCTAAAGGCATACGTTATTGTTTTTTTTTTTGGGGGGGGAATTTTGATTTGATCAAATGATTTCTGAAAAATAGTTACAAATATATACTATTATAGATGTAATTTAAAAATATATCATATTTTTTCAACATAAAATCAAATAAAAATTAGAACTTGTTAATGGTAAGGCAGTATATTTTTGTTTGATGTGATTGGCATTTGTCAAAATTGCGATTGAGGTTAACAATTAAATGTACATGAATCTTTTTTTTTTGGGTATCTTTGCTATTGTTTTTCAGCTGCTATTTTTGTGCTATTTTACCTAGGATAGGCAGGATTTGCAGTTGCTCATATTTAAGTAGACACTAAGACGAGCATCTTGACTTGGAATCTTGCAGGTCCCAATTTGAATGGGCTATTTGGACGGCAATCTGGTACAACTCCTGGATACTCTTACTCTGCTGCTAACAAGAATATGGCTGTGATATGGGAAGAAAAGACGTTGTATGATTACTTGCTTAACCCCAAGAAGGTAAATACTCTTTATTTCTTAACACGTGTGAACTTATGGTATTTGATCTGCAGTTAATTTATTCCCCTGAGTTGTTCTCCAGTTGTTCTAATTGTGAATTAAGTGATATTAATAGTAAACACACACCTAGTAGGCATTGTCCTGTTCTGTAATTTTAATCAGTAGCCTTGTTCTTCATAATACATCTCCAACTGAGCGACAACTAATGAAATATTTTGGGCACTTTGACCGACACGTTCATCTTTTACACCATCTTCCCCACTAGATCCACTTATCTATTCTCTATTCTTTCTTTCTTCTTCTTTTTTTTTTTTTGAACATTTCAAGTAGTCTTGCTTTAACAAAAAGTCTGTGGAGTCGTGCACCTTTTTCTACTTTGATAATATAAAAGCCAAAAGTTTGGAAGAATAGGCAACCACTTCTTGTATCACAATCCTCCATTCACTTGGAGTTTCAATCTGGATTTAAGATAGAATAGAACCCACAAAAATTGCCTCTTATATATGAATATACTTCAGCAGTCTAGCTGTTAGACTAGTAGTTGGGAAAATATTAGGATTATTAAAATTATTATTATATTAGTACATAGCTGGTAAGATTGTTAGGGCTTTTAGTTACAAAAAGAGGGAGTGGGGTTGGGAGAAAGGTTTGAAGAATTTTTTGGGATTTCGTTTGAGAAATTTGGGAGAGACTGAAGAGTAGCCTTCTCGAAAGGCTATGGCACATTGTAGTTTCTTCATTGATATTGCAATATATATTTCTATCTCTTAGTGTTTTCTTTATTCTTTGTTGTTCTTGAGTGTTCTTGTTAGGAGGTATCCTAATACTGTTATGTCAATAGTTTATTTATTTGGCACATTGAGTTCCCTCCTCAATTTCTTCCCAAGTCTCCTTTTGTGTTCTTGTTAGGAGGTATCCTAACACTATTATGTCAATGCTTTTTAAGTCTTCTGCCACTCCTTTCATGGACATAACTACAAAGGAAGTTTGGAAAATTCCTCTGTTCTCAGTTTGGCATTAAAGACATTCAAAGTTTTCGAAGTGAAACTCTCTCAGTGGAACTTCTGAGCGAAAGTATGTAACACTCACAGTATCATTAGAAAAGGTGTCATTAGAGCTGTATTTCACTGTGTTGGTGTTCTGTGTGTATAAAAGCTCAGAATCCCTAGATAATCTCCTGTTGTTGGTATTTGTGACCCCACTACTGCTCAGATGTGGATTGTTCTTGACCACCCTCAGCACTACAACCCCTTTTTCTTTATGTCTTAGAAGGTCGTGCTTTTAAAAGTGTGAAGGTTTCTTGTTTTCAATGTGACGGTTTCTTTCTGGCTTTTATGGCGGCTCAAAAGGAAAGGAACAAAGTGTTGTTTATAACCACATTGTTTGTAGTGCCCATAAGAAATCGCGAAGCCACCCATTAATAGTAATAGAACTCTGCGCAAAGTTTCCTCCCTATAGTCCTACCGTTATTCCTTTTTCTTCTTCATTTGTCTGCGGAAACTTCGCAAACTAACGTTGTGGCATTCTTTAAAGTTCTAATTCTTTAGAGGACCGTGGTTTGAATCCTTCCATCTCTATTGTGCTAATTTTTTTTTACTGACACATCTCATGTTACAGATCTTTACTAGCTCCGCAACTCTTATGATTACTATGGTTTTGATGAATACAAAGTTATTTGTCAATTTTGAGGAGCATGATATGAAAAATGTTCTCGAACTGGACATATGAATTTTGTTGGATATGTTTTACGAATGATCAGTTGTTTTTCTTCTGAACTCTACCTTTTAGTTGCATAATAAAATATTGACAAATTTTTTGTCTATCATGATACAGTATATTCCCGGAACAAAGATGGTTTTCCCTGGGCTGAAGAAACCGCAGGAACGTGCCGACCTTATTGCTTATCTGAAGGAATCAACTGCTTAAATGAGACATATATGATGCATCTGCCCATCTAGAATTTTTTGAGACTTTTCCCCTCATTAAATAAGAACATTGAGGAAAATTAGATGAAAATTTGGAGGTAACATACAAAGTAATTTGTGTCAGAAAGACTTGTCTTGTGAAAACCACAAGAATTCCTTTTCTTTTCATTAATTTCTTATTTTGCAGAGATAATATCCATTTGTAGCTTTACATTATTATTGTGTGAACATAACTGCTACAATTTTTTTGGCGAAGCCGGTTATGGCAATTTATTTTTCATAATAAATATCACACTTGTTACAGCCTACCAATTTATCTATCCTTGCGCAAGAATAGGTTTATTGACAATATATAAATTTCTCTATTGAAGAATGATATAAATTCATGTGTTTTGTCGGTATTTTTCAAATATGGTCTGAACTTCTTGATTTTGTGTTTGAGGGAGTTGGTGCGACGAAGTAGGTGCGGGTGACCAAGAATAAAGTATTTAATGCATAAGCCAGGGTAAGATTACAAATCCATATCAAACATATTACACTACAGTTCATACTAATATATTTGTTGGGTCGTATAGAGTCATCTAAATGCAAAAGGACTCAAAAACAAATCTTTCCCTCACTGTGATGAGTTCAGATCGCACCGAATGATGGCGAGGACTAGGGGTAGATGTGCATTGGGAGGATGGGAGGACCCCAAGAATATTATGACCCAATTTCTCCTGTGTTCAACACTACAACCAAAGCATATGAGGAAGAATAGTTGGGTACACCAACCAATAGGTCGACTACAGTAGTAACAACGTTTACACATTATGTACGACATGAAGATGCAAACGACCAACTTGAGAGGATTACATCTTGGTCTCGATCAAAGTTTGTTGAGTCGAACAATGCATCACAGGCATTCTCTCAAATATAAGAGTTATCGATCTAAGACAGGTCATGCTCATGGAAATCATATTCACCACTGTACATAAGACCAACAATTCTGTCCCAATGGAGTTCAAGATGAGTTGTTGCATGCCCCTCTTGAGAAGAGATGAATAACCTTACCTTGTTACCACTATTTTTGTGAGAACAAGACTATTGTCAAAATGTCTTCAAATATTTATTTTCATTTTAATTAAAATTTATATTGAAAGAAATTTGTAAAATATACATAAAATAATAGAAACAAAAAGATCTCAATCTTATAATTTATGGAAACAATTTCTTAATAAAGAATAATTTAACAGTTGTA

mRNA sequence

GGTATATAAAAAAGCAAAATACAAAGAATAGCTTCTCCATCCTTCTACAAACACTGCGAACCCTAGCCCTCAGATCTGAACGCCACCTCATTCTTACGCCATGGCGAGCTTTAACGAAGCCCCTCCCGGCAATTCCAAAGCTGGAGAGAAGATCTTCAAGACCAAATGCGCTCAGTGCCACACTGTCGACAAAGGGGCTGGTCACAAGCAAGGTCCCAATTTGAATGGGCTATTTGGACGGCAATCTGGTACAACTCCTGGATACTCTTACTCTGCTGCTAACAAGAATATGGCTGTGATATGGGAAGAAAAGACGTTGTATGATTACTTGCTTAACCCCAAGAAGTATATTCCCGGAACAAAGATGGTTTTCCCTGGGCTGAAGAAACCGCAGGAACGTGCCGACCTTATTGCTTATCTGAAGGAATCAACTGCTTAAATGAGACATATATGATGCATCTGCCCATCTAGAATTTTTTGAGACTTTTCCCCTCATTAAATAAGAACATTGAGGAAAATTAGATGAAAATTTGGAGGGAGTTGGTGCGACGAAGTAGGTGCGGGTGACCAAGAATAAAGTATTTAATGCATAAGCCAGGATCGCACCGAATGATGGCGAGGACTAGGGGTAGATGTGCATTGGGAGGATGGGAGGACCCCAAGAATATTATGACCCAATTTCTCCTGTGTTCAACACTACAACCAAAGCATATGAGGAAGAATAGTTGGGTACACCAACCAATAGGTCGACTACAGTAGTAACAACGTTTACACATTATGTACGACATGAAGATGCAAACGACCAACTTGAGAGGATTACATCTTGGTCTCGATCAAAGTTTGTTGAGTCGAACAATGCATCACAGGCATTCTCTCAAATATAAGAGTTATCGATCTAAGACAGGTCATGCTCATGGAAATCATATTCACCACTGTACATAAGACCAACAATTCTGTCCCAATGGAGTTCAAGATGAGTTGTTGCATGCCCCTCTTGAGAAGAGATGAATAACCTTACCTTGTTACCACTATTTTTGTGAGAACAAGACTATTGTCAAAATGTCTTCAAATATTTATTTTCATTTTAATTAAAATTTATATTGAAAGAAATTTGTAAAATATACATAAAATAATAGAAACAAAAAGATCTCAATCTTATAATTTATGGAAACAATTTCTTAATAAAGAATAATTTAACAGTTGTA

Coding sequence (CDS)

ATGGCGAGCTTTAACGAAGCCCCTCCCGGCAATTCCAAAGCTGGAGAGAAGATCTTCAAGACCAAATGCGCTCAGTGCCACACTGTCGACAAAGGGGCTGGTCACAAGCAAGGTCCCAATTTGAATGGGCTATTTGGACGGCAATCTGGTACAACTCCTGGATACTCTTACTCTGCTGCTAACAAGAATATGGCTGTGATATGGGAAGAAAAGACGTTGTATGATTACTTGCTTAACCCCAAGAAGTATATTCCCGGAACAAAGATGGTTTTCCCTGGGCTGAAGAAACCGCAGGAACGTGCCGACCTTATTGCTTATCTGAAGGAATCAACTGCTTAA

Protein sequence

MASFNEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA
Homology
[Close]
BLAST of Lsi11G000540 vs. ExPASy Swiss-Prot
Match: P00051 (Cytochrome c OS=Cucurbita maxima OX=3661 PE=1 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 6.8e-59
Identity = 107/111 (96.40%), Postives = 110/111 (99.10%), Query Frame = 0 

Query: 2   ASFNEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 61
           ASF+EAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN
Sbjct: 1   ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 60

Query: 62  KNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 113
           KN AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLKE+TA
Sbjct: 61  KNRAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111

[Close]
BLAST of Lsi11G000540 vs. ExPASy Swiss-Prot
Match: A2Y4S9 (Cytochrome c OS=Oryza sativa subsp. indica OX=39946 GN=CC-1 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 2.6e-58
Identity = 105/112 (93.75%), Postives = 109/112 (97.32%), Query Frame = 0 

Query: 1   MASFNEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF+EAPPGN KAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYS A
Sbjct: 1   MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 113
           NKNMAVIWEE TLYDYLLNPKKYIPGTKMVFPGLKKPQERADLI+YLKE+T+
Sbjct: 61  NKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS 112

[Close]
BLAST of Lsi11G000540 vs. ExPASy Swiss-Prot
Match: Q0DI31 (Cytochrome c OS=Oryza sativa subsp. japonica OX=39947 GN=CC-1 PE=1 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 2.6e-58
Identity = 105/112 (93.75%), Postives = 109/112 (97.32%), Query Frame = 0 

Query: 1   MASFNEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF+EAPPGN KAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYS A
Sbjct: 1   MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 113
           NKNMAVIWEE TLYDYLLNPKKYIPGTKMVFPGLKKPQERADLI+YLKE+T+
Sbjct: 61  NKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS 112

[Close]
BLAST of Lsi11G000540 vs. ExPASy Swiss-Prot
Match: P00052 (Cytochrome c OS=Vigna radiata var. radiata OX=3916 PE=1 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 3.4e-58
Identity = 106/111 (95.50%), Postives = 109/111 (98.20%), Query Frame = 0 

Query: 2   ASFNEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 61
           ASF+EAPPGNSK+GEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTT GYSYS AN
Sbjct: 1   ASFDEAPPGNSKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSTAN 60

Query: 62  KNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 113
           KNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLKESTA
Sbjct: 61  KNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 111

[Close]
BLAST of Lsi11G000540 vs. ExPASy Swiss-Prot
Match: P00054 (Cytochrome c OS=Sesamum indicum OX=4182 PE=1 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.7e-57
Identity = 103/111 (92.79%), Postives = 108/111 (97.30%), Query Frame = 0 

Query: 2   ASFNEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 61
           ASF++APPG+ K+GEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN
Sbjct: 1   ASFBZAPPGBVKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAAN 60

Query: 62  KNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 113
           KNMAVIW E TLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKE+TA
Sbjct: 61  KNMAVIWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKEATA 111

[Close]
BLAST of Lsi11G000540 vs. ExPASy TrEMBL
Match: A0A6J1JWC5 (cytochrome c OS=Cucurbita maxima OX=3661 GN=LOC111490272 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 4.6e-58
Identity = 110/112 (98.21%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MASFNEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF+EAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA
Sbjct: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 113
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLKESTA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112

[Close]
BLAST of Lsi11G000540 vs. ExPASy TrEMBL
Match: A0A6J1EPS9 (cytochrome c OS=Cucurbita moschata OX=3662 GN=LOC111436470 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 4.6e-58
Identity = 110/112 (98.21%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MASFNEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF+EAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA
Sbjct: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 113
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLKESTA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112

[Close]
BLAST of Lsi11G000540 vs. ExPASy TrEMBL
Match: A0A5D3DTP9 (Cytochrome c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2133G00240 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 6.0e-58
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MASFNEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF+EAPPGNSK GEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA
Sbjct: 1   MASFDEAPPGNSKTGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 113
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 112

[Close]
BLAST of Lsi11G000540 vs. ExPASy TrEMBL
Match: A0A1S3BUU3 (cytochrome c OS=Cucumis melo OX=3656 GN=LOC103493436 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 6.0e-58
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MASFNEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF+EAPPGNSK GEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA
Sbjct: 1   MASFDEAPPGNSKTGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 113
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 112

[Close]
BLAST of Lsi11G000540 vs. ExPASy TrEMBL
Match: A0A6J1AML9 (cytochrome c OS=Herrania umbratica OX=108875 GN=LOC110419388 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 7.8e-58
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MASFNEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF EAPPGNSKAGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTTPGYSYSAA
Sbjct: 1   MASFQEAPPGNSKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 113
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 112

[Close]
BLAST of Lsi11G000540 vs. NCBI nr
Match: XP_038893188.1 (cytochrome c [Benincasa hispida])

HSP 1 Score: 234.6 bits (597), Expect = 4.2e-58
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MASFNEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF+EAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA
Sbjct: 26  MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 85

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 113
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA
Sbjct: 86  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 137

[Close]
BLAST of Lsi11G000540 vs. NCBI nr
Match: XP_022930036.1 (cytochrome c [Cucurbita moschata] >XP_022994612.1 cytochrome c [Cucurbita maxima] >XP_023530772.1 cytochrome c [Cucurbita pepo subsp. pepo] >KAG6601704.1 hypothetical protein SDJN03_06937, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032456.1 hypothetical protein SDJN02_06504 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 233.4 bits (594), Expect = 9.4e-58
Identity = 110/112 (98.21%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MASFNEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF+EAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA
Sbjct: 1   MASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 113
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLKESTA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112

[Close]
BLAST of Lsi11G000540 vs. NCBI nr
Match: XP_008452381.1 (PREDICTED: cytochrome c [Cucumis melo] >KAA0058379.1 cytochrome c [Cucumis melo var. makuwa] >TYK26882.1 cytochrome c [Cucumis melo var. makuwa])

HSP 1 Score: 233.0 bits (593), Expect = 1.2e-57
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MASFNEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF+EAPPGNSK GEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA
Sbjct: 1   MASFDEAPPGNSKTGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 113
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 112

[Close]
BLAST of Lsi11G000540 vs. NCBI nr
Match: XP_021288081.1 (cytochrome c [Herrania umbratica])

HSP 1 Score: 232.6 bits (592), Expect = 1.6e-57
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0 

Query: 1   MASFNEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF EAPPGNSKAGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTTPGYSYSAA
Sbjct: 1   MASFQEAPPGNSKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 113
           NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA
Sbjct: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 112

[Close]
BLAST of Lsi11G000540 vs. NCBI nr
Match: XP_010542745.1 (PREDICTED: cytochrome c [Tarenaya hassleriana])

HSP 1 Score: 231.1 bits (588), Expect = 4.7e-57
Identity = 108/112 (96.43%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MASFNEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF+EAPPGNSKAGEKIF+TKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA
Sbjct: 1   MASFDEAPPGNSKAGEKIFRTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 113
           NKNMAV+WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKE+TA
Sbjct: 61  NKNMAVMWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKEATA 112

[Close]
BLAST of Lsi11G000540 vs. TAIR 10
Match: AT4G10040.1 (cytochrome c-2 )

HSP 1 Score: 222.6 bits (566), Expect = 1.6e-58
Identity = 104/112 (92.86%), Postives = 109/112 (97.32%), Query Frame = 0 

Query: 1   MASFNEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF+EAPPGN KAGEKIF+TKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTTPGYSYSAA
Sbjct: 1   MASFDEAPPGNPKAGEKIFRTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 113
           NK+MAV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLKE TA
Sbjct: 61  NKSMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEGTA 112

[Close]
BLAST of Lsi11G000540 vs. TAIR 10
Match: AT1G22840.1 (CYTOCHROME C-1 )

HSP 1 Score: 217.2 bits (552), Expect = 6.5e-57
Identity = 102/112 (91.07%), Postives = 107/112 (95.54%), Query Frame = 0 

Query: 1   MASFNEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
           MASF+EAPPGN+KAGEKIF+TKCAQCHTV+ GAGHKQGPNLNGLFGRQSGTT GYSYSAA
Sbjct: 1   MASFDEAPPGNAKAGEKIFRTKCAQCHTVEAGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60

Query: 61  NKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKESTA 113
           NKN AV WEEK LYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLKESTA
Sbjct: 61  NKNKAVEWEEKALYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112

[Close]
BLAST of Lsi11G000540 vs. TAIR 10
Match: AT1G22840.2 (CYTOCHROME C-1 )

HSP 1 Score: 159.1 bits (401), Expect = 2.1e-39
Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = 0 

Query: 1  MASFNEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAA 60
          MASF+EAPPGN+KAGEKIF+TKCAQCHTV+ GAGHKQGPNLNGLFGRQSGTT GYSYSAA
Sbjct: 1  MASFDEAPPGNAKAGEKIFRTKCAQCHTVEAGAGHKQGPNLNGLFGRQSGTTAGYSYSAA 60

Query: 61 NKNMAVIWEEKTLYDYLLNPKKYI 85
          NKN AV WEEK LYDYLLNPKK +
Sbjct: 61 NKNKAVEWEEKALYDYLLNPKKVL 84

The following BLAST results are available for this feature:
BLAST of Lsi11G000540 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P000516.8e-5996.40Cytochrome c OS=Cucurbita maxima OX=3661 PE=1 SV=1[more]
A2Y4S92.6e-5893.75Cytochrome c OS=Oryza sativa subsp. indica OX=39946 GN=CC-1 PE=3 SV=1[more]
Q0DI312.6e-5893.75Cytochrome c OS=Oryza sativa subsp. japonica OX=39947 GN=CC-1 PE=1 SV=1[more]
P000523.4e-5895.50Cytochrome c OS=Vigna radiata var. radiata OX=3916 PE=1 SV=1[more]
P000541.7e-5792.79Cytochrome c OS=Sesamum indicum OX=4182 PE=1 SV=1[more]
BLAST of Lsi11G000540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JWC54.6e-5898.21cytochrome c OS=Cucurbita maxima OX=3661 GN=LOC111490272 PE=3 SV=1[more]
A0A6J1EPS94.6e-5898.21cytochrome c OS=Cucurbita moschata OX=3662 GN=LOC111436470 PE=3 SV=1[more]
A0A5D3DTP96.0e-5898.21Cytochrome c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2133G00240 ... [more]
A0A1S3BUU36.0e-5898.21cytochrome c OS=Cucumis melo OX=3656 GN=LOC103493436 PE=3 SV=1[more]
A0A6J1AML97.8e-5898.21cytochrome c OS=Herrania umbratica OX=108875 GN=LOC110419388 PE=3 SV=1[more]
BLAST of Lsi11G000540 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038893188.14.2e-5899.11cytochrome c [Benincasa hispida][more]
XP_022930036.19.4e-5898.21cytochrome c [Cucurbita moschata] >XP_022994612.1 cytochrome c [Cucurbita maxima... [more]
XP_008452381.11.2e-5798.21PREDICTED: cytochrome c [Cucumis melo] >KAA0058379.1 cytochrome c [Cucumis melo ... [more]
XP_021288081.11.6e-5798.21cytochrome c [Herrania umbratica][more]
XP_010542745.14.7e-5796.43PREDICTED: cytochrome c [Tarenaya hassleriana][more]
BLAST of Lsi11G000540 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G10040.11.6e-5892.86cytochrome c-2 [more]
AT1G22840.16.5e-5791.07CYTOCHROME C-1 [more]
AT1G22840.22.1e-3986.90CYTOCHROME C-1 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002327Cytochrome c, class IA/ IBPRINTSPR00604CYTCHRMECIABcoord: 101..109
score: 78.4
coord: 84..94
score: 81.56
coord: 22..29
score: 83.53
coord: 65..81
score: 58.88
coord: 35..50
score: 75.76
coord: 51..61
score: 61.26
IPR002327Cytochrome c, class IA/ IBPANTHERPTHR11961CYTOCHROME Ccoord: 1..112
IPR009056Cytochrome c-like domainPFAMPF00034Cytochrom_Ccoord: 13..109
e-value: 9.6E-14
score: 52.3
IPR009056Cytochrome c-like domainPROSITEPS51007CYTCcoord: 10..111
score: 15.863592
IPR036909Cytochrome c-like domain superfamilyGENE3D1.10.760.10coord: 1..112
e-value: 3.0E-45
score: 155.2
IPR036909Cytochrome c-like domain superfamilySUPERFAMILY46626Cytochrome ccoord: 9..108
NoneNo IPR availablePANTHERPTHR11961:SF36CYTOCHROME Ccoord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G000540.1Lsi11G000540.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010336 gibberellic acid homeostasis
biological_process GO:0006123 mitochondrial electron transport, cytochrome c to oxygen
biological_process GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
cellular_component GO:0005758 mitochondrial intermembrane space
cellular_component GO:0070469 respirasome
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0020037 heme binding
molecular_function GO:0046872 metal ion binding