Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAACAAGTGAAGGATCTTCACAAGGATTGCACTTTCAACCAAAGCAGGAGTCAGTGTGCAAGGAGAAAGCATCTCAAAATGATTCTAAGATTGGGGATAATCTAAAAGTTGCCCCTTCCATCTCAACCACTAAAGACACATCATACAAGTTCCAATTTAAGCCAAAGCTTGTGTATGCCAAAAAGGAAATTGCAGCCCAAAATGATGTGAAGATTGAGAAAGACGCAGTGAATAATGTAAACAACAAGGCAGAAGCTTCACAAAAGCTGCAGCAGTACAATCAGAAGCTAAAAAATGTACAAAAGGAAACAACAAGCTCAAGTGATTCAAAAGCGAAGAAGGATAAGATGAAAGACTCTGTTAAGTTATCAGAAGCTGGAGAGCCATCACAACAGCTGCTAACTGAACAGAAAAAGCTAAAACAAAAGGATGTGAAAGGTGATAAGGGTAAACAGAAAGTGGCAGATCAGAAGTTCATAGCCAAGCAGTACTGGAAAAAGGTAACAGAAAATGATATGAAATCCAACTTTCAAGAGCATTTAGCATATGGAGGATTTCAGTAG
mRNA sequence
ATGTCAACAAGTGAAGGATCTTCACAAGGATTGCACTTTCAACCAAAGCAGGAGTCAGTGTGCAAGGAGAAAGCATCTCAAAATGATTCTAAGATTGGGGATAATCTAAAAGTTGCCCCTTCCATCTCAACCACTAAAGACACATCATACAAGTTCCAATTTAAGCCAAAGCTTGTGTATGCCAAAAAGGAAATTGCAGCCCAAAATGATGTGAAGATTGAGAAAGACGCAGTGAATAATGTAAACAACAAGGCAGAAGCTTCACAAAAGCTGCAGCAGTACAATCAGAAGCTAAAAAATGTACAAAAGGAAACAACAAGCTCAAGTGATTCAAAAGCGAAGAAGGATAAGATGAAAGACTCTGTTAAGTTATCAGAAGCTGGAGAGCCATCACAACAGCTGCTAACTGAACAGAAAAAGCTAAAACAAAAGGATGTGAAAGGTGATAAGGGTAAACAGAAAGTGGCAGATCAGAAGTTCATAGCCAAGCAGTACTGGAAAAAGGTAACAGAAAATGATATGAAATCCAACTTTCAAGAGCATTTAGCATATGGAGGATTTCAGTAG
Coding sequence (CDS)
ATGTCAACAAGTGAAGGATCTTCACAAGGATTGCACTTTCAACCAAAGCAGGAGTCAGTGTGCAAGGAGAAAGCATCTCAAAATGATTCTAAGATTGGGGATAATCTAAAAGTTGCCCCTTCCATCTCAACCACTAAAGACACATCATACAAGTTCCAATTTAAGCCAAAGCTTGTGTATGCCAAAAAGGAAATTGCAGCCCAAAATGATGTGAAGATTGAGAAAGACGCAGTGAATAATGTAAACAACAAGGCAGAAGCTTCACAAAAGCTGCAGCAGTACAATCAGAAGCTAAAAAATGTACAAAAGGAAACAACAAGCTCAAGTGATTCAAAAGCGAAGAAGGATAAGATGAAAGACTCTGTTAAGTTATCAGAAGCTGGAGAGCCATCACAACAGCTGCTAACTGAACAGAAAAAGCTAAAACAAAAGGATGTGAAAGGTGATAAGGGTAAACAGAAAGTGGCAGATCAGAAGTTCATAGCCAAGCAGTACTGGAAAAAGGTAACAGAAAATGATATGAAATCCAACTTTCAAGAGCATTTAGCATATGGAGGATTTCAGTAG
Protein sequence
MSTSEGSSQGLHFQPKQESVCKEKASQNDSKIGDNLKVAPSISTTKDTSYKFQFKPKLVYAKKEIAAQNDVKIEKDAVNNVNNKAEASQKLQQYNQKLKNVQKETTSSSDSKAKKDKMKDSVKLSEAGEPSQQLLTEQKKLKQKDVKGDKGKQKVADQKFIAKQYWKKVTENDMKSNFQEHLAYGGFQ
Homology
BLAST of Lsi11G000310 vs. ExPASy TrEMBL
Match:
A0A0A0KQV9 (AAA_12 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G266850 PE=4 SV=1)
HSP 1 Score: 220.7 bits (561), Expect = 5.2e-54
Identity = 134/184 (72.83%), Postives = 148/184 (80.43%), Query Frame = 0
Query: 1 MSTSEGSSQGLHFQPKQESVCKEKASQNDSKIGDNLKVAPSISTTKDTSYKFQFKPKLVY 60
MSTSE SS GL FQ QES+C EK SQNDSKI DNL VAP IS+ KDTSYK QFKPK VY
Sbjct: 1470 MSTSEWSSHGLQFQSNQESLCMEKTSQNDSKIEDNLTVAPFISSPKDTSYKLQFKPKSVY 1529
Query: 61 AKKEIAAQNDVKIEKDAVNNVNNKAEASQKLQQY-NQKLKNVQKETTSSSDSKAKKDKMK 120
AK+ IAAQND+K+EKD VN V NKAEASQ+LQQ NQK++N KETTSS DSKAKKDKMK
Sbjct: 1530 AKEVIAAQNDLKMEKDEVNIV-NKAEASQRLQQQCNQKVRNAHKETTSSIDSKAKKDKMK 1589
Query: 121 DSVKLSEAGEPS---QQLLTEQKKLKQKDVKGDKGKQKVADQKFIAKQYWKKVTENDMKS 180
+SV LSE G+ S QQL EQKKLK K+V G+KGKQKV D KFIAKQYW+KVTEN MK
Sbjct: 1590 NSVNLSEFGDSSQQLQQLQIEQKKLKNKNVDGEKGKQKVTDHKFIAKQYWRKVTENGMKF 1649
BLAST of Lsi11G000310 vs. ExPASy TrEMBL
Match:
A0A6J1GWV9 (uncharacterized protein LOC111458260 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458260 PE=4 SV=1)
HSP 1 Score: 143.3 bits (360), Expect = 1.0e-30
Identity = 98/155 (63.23%), Postives = 112/155 (72.26%), Query Frame = 0
Query: 1 MSTSEGSSQGLHFQPKQESVCKEKASQNDSKIGDNLKVA--PSISTTKDTSYKFQFKPKL 60
MST++GSSQGLHFQPK ++VCKEKASQN+ K GD +KVA +ST K +S KFQFKPK+
Sbjct: 3708 MSTAKGSSQGLHFQPKNDAVCKEKASQNNLKTGDKMKVAHVHGMSTAKGSSNKFQFKPKV 3767
Query: 61 V-YAKKEIAAQNDVKIEKDAVNNVNNKAEASQKLQQYNQKLKNVQKETTSSSDSKAKKDK 120
V AKKEIA QND K EKD NV NKAE+ QKLQ Q LK QKET+ S KKDK
Sbjct: 3768 VSAAKKEIATQNDGKTEKD-TKNVVNKAESGQKLQG-KQNLKYEQKETSLSDSKVKKKDK 3827
Query: 121 MKDSVKLSEAGEPSQQLLTEQKKLKQKDVKGDKGK 153
MK LSEA E SQ L EQKKLKQ+D+K +KGK
Sbjct: 3828 MKLFNNLSEAKESSQPLQLEQKKLKQRDIKAEKGK 3860
BLAST of Lsi11G000310 vs. ExPASy TrEMBL
Match:
A0A6J1GWN5 (uncharacterized protein LOC111458260 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458260 PE=4 SV=1)
HSP 1 Score: 143.3 bits (360), Expect = 1.0e-30
Identity = 98/155 (63.23%), Postives = 112/155 (72.26%), Query Frame = 0
Query: 1 MSTSEGSSQGLHFQPKQESVCKEKASQNDSKIGDNLKVA--PSISTTKDTSYKFQFKPKL 60
MST++GSSQGLHFQPK ++VCKEKASQN+ K GD +KVA +ST K +S KFQFKPK+
Sbjct: 3669 MSTAKGSSQGLHFQPKNDAVCKEKASQNNLKTGDKMKVAHVHGMSTAKGSSNKFQFKPKV 3728
Query: 61 V-YAKKEIAAQNDVKIEKDAVNNVNNKAEASQKLQQYNQKLKNVQKETTSSSDSKAKKDK 120
V AKKEIA QND K EKD NV NKAE+ QKLQ Q LK QKET+ S KKDK
Sbjct: 3729 VSAAKKEIATQNDGKTEKD-TKNVVNKAESGQKLQG-KQNLKYEQKETSLSDSKVKKKDK 3788
Query: 121 MKDSVKLSEAGEPSQQLLTEQKKLKQKDVKGDKGK 153
MK LSEA E SQ L EQKKLKQ+D+K +KGK
Sbjct: 3789 MKLFNNLSEAKESSQPLQLEQKKLKQRDIKAEKGK 3821
BLAST of Lsi11G000310 vs. ExPASy TrEMBL
Match:
A0A6J1DWW3 (uncharacterized protein LOC111023887 OS=Momordica charantia OX=3673 GN=LOC111023887 PE=4 SV=1)
HSP 1 Score: 135.6 bits (340), Expect = 2.2e-28
Identity = 84/131 (64.12%), Postives = 97/131 (74.05%), Query Frame = 0
Query: 1 MSTSEGSSQGLHFQPKQESVCKEKASQNDSKIGDNLKVAPSISTTKDTSYKFQFKPKLVY 60
M T +GSSQGL FQPKQES KEKAS+N++K GD +KV P +ST KD+S+KFQFKPK
Sbjct: 3791 MLTDKGSSQGLQFQPKQESTHKEKASENNTKTGDKMKVTPIMSTAKDSSHKFQFKPKPGV 3850
Query: 61 AKKEIAAQNDVKIEKDAVNNVNNKAEASQKLQQYNQKLKNVQKETTSSSDSKAKKDKMKD 120
AK E AQN+VK EKD N NNKAE++QKL Q QKLK VQKETT S SK KKD+MK
Sbjct: 3851 AKNETTAQNNVKNEKDTTNIDNNKAESTQKL-QCKQKLKYVQKETTGSRGSKVKKDEMKI 3910
Query: 121 SVKLSEAGEPS 132
+ SEA EPS
Sbjct: 3911 ADNSSEAQEPS 3920
BLAST of Lsi11G000310 vs. ExPASy TrEMBL
Match:
A0A5A7T398 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G001350 PE=4 SV=1)
HSP 1 Score: 132.5 bits (332), Expect = 1.8e-27
Identity = 96/165 (58.18%), Postives = 117/165 (70.91%), Query Frame = 0
Query: 1 MSTSEGSSQGLHFQPKQESVCKEKASQNDSKIGDNLKVA--PSISTTKDTSYKFQFKPKL 60
M T++GSSQGL QPK E + EKASQNDSKI D +KV+ +ST K++S K Q K KL
Sbjct: 4121 MPTAKGSSQGLQVQPKHEPMW-EKASQNDSKIVDKMKVSHVHVVSTAKESSNKSQCKSKL 4180
Query: 61 VYAKKEIAAQNDVKIEKDAVNNVNNKAEASQKLQQYNQKLKNVQKETTSSSDSKAKKDKM 120
V A+KE AA+N VK E A N VN + E++QKLQ K+VQKET+SSS++K KKDK
Sbjct: 4181 VSARKETAAKNVVKTENSATNIVNKEGESAQKLQN-RPNPKHVQKETSSSSNTKVKKDKT 4240
Query: 121 KDSVKLSEAGEPSQQLLTEQKKLKQKDVKGDKGKQKVADQKFIAK 164
K SEA +PSQQL EQ+KLKQKDVK +KGKQKVA+ K AK
Sbjct: 4241 K---VFSEAKKPSQQLQLEQRKLKQKDVKAEKGKQKVANHKPKAK 4280
BLAST of Lsi11G000310 vs. NCBI nr
Match:
XP_031741284.1 (uncharacterized protein LOC101212224 [Cucumis sativus] >XP_031741290.1 uncharacterized protein LOC116403818 [Cucumis sativus])
HSP 1 Score: 220.7 bits (561), Expect = 1.1e-53
Identity = 134/184 (72.83%), Postives = 148/184 (80.43%), Query Frame = 0
Query: 1 MSTSEGSSQGLHFQPKQESVCKEKASQNDSKIGDNLKVAPSISTTKDTSYKFQFKPKLVY 60
MSTSE SS GL FQ QES+C EK SQNDSKI DNL VAP IS+ KDTSYK QFKPK VY
Sbjct: 2207 MSTSEWSSHGLQFQSNQESLCMEKTSQNDSKIEDNLTVAPFISSPKDTSYKLQFKPKSVY 2266
Query: 61 AKKEIAAQNDVKIEKDAVNNVNNKAEASQKLQQY-NQKLKNVQKETTSSSDSKAKKDKMK 120
AK+ IAAQND+K+EKD VN V NKAEASQ+LQQ NQK++N KETTSS DSKAKKDKMK
Sbjct: 2267 AKEVIAAQNDLKMEKDEVNIV-NKAEASQRLQQQCNQKVRNAHKETTSSIDSKAKKDKMK 2326
Query: 121 DSVKLSEAGEPS---QQLLTEQKKLKQKDVKGDKGKQKVADQKFIAKQYWKKVTENDMKS 180
+SV LSE G+ S QQL EQKKLK K+V G+KGKQKV D KFIAKQYW+KVTEN MK
Sbjct: 2327 NSVNLSEFGDSSQQLQQLQIEQKKLKNKNVDGEKGKQKVTDHKFIAKQYWRKVTENGMKF 2386
BLAST of Lsi11G000310 vs. NCBI nr
Match:
KAE8648072.1 (hypothetical protein Csa_018863 [Cucumis sativus])
HSP 1 Score: 211.5 bits (537), Expect = 6.5e-51
Identity = 129/176 (73.30%), Postives = 142/176 (80.68%), Query Frame = 0
Query: 1 MSTSEGSSQGLHFQPKQESVCKEKASQNDSKIGDNLKVAPSISTTKDTSYKFQFKPKLVY 60
MSTSE SS GL FQ QES+C EK SQNDSKI DNL VAP IS+ KDTSYK QFKPK VY
Sbjct: 2161 MSTSEWSSHGLQFQSNQESLCMEKTSQNDSKIEDNLTVAPFISSPKDTSYKLQFKPKSVY 2220
Query: 61 AKKEIAAQNDVKIEKDAVNNVNNKAEASQKLQQY-NQKLKNVQKETTSSSDSKAKKDKMK 120
AK+ IAAQND+K+EKD VN V NKAEASQ+LQQ NQK++N KETTSS DSKAKKDKMK
Sbjct: 2221 AKEVIAAQNDLKMEKDEVNIV-NKAEASQRLQQQCNQKVRNAHKETTSSIDSKAKKDKMK 2280
Query: 121 DSVKLSEAGEPS---QQLLTEQKKLKQKDVKGDKGKQKVADQKFIAKQYWKKVTEN 173
+SV LSE G+ S QQL EQKKLK K+V G+KGKQKV D KFIAKQYW+KVTEN
Sbjct: 2281 NSVNLSEFGDSSQQLQQLQIEQKKLKNKNVDGEKGKQKVTDHKFIAKQYWRKVTEN 2335
BLAST of Lsi11G000310 vs. NCBI nr
Match:
XP_038876924.1 (uncharacterized protein LOC120069278 [Benincasa hispida] >XP_038876925.1 uncharacterized protein LOC120069278 [Benincasa hispida])
HSP 1 Score: 162.9 bits (411), Expect = 2.6e-36
Identity = 105/165 (63.64%), Postives = 123/165 (74.55%), Query Frame = 0
Query: 1 MSTSEGSSQGLHFQPKQESVCKEKASQNDSKIGDNLKVA--PSISTTKDTSYKFQFKPKL 60
MST++GSS GL Q K E +CKEKASQND K GD +KV+ S+ST K +S K QFKPKL
Sbjct: 3705 MSTAKGSSDGLQVQAKLEPLCKEKASQNDPKRGDKMKVSHVDSVSTAKASSNKLQFKPKL 3764
Query: 61 VYAKKEIAAQNDVKIEKDAVNNVNNKAEASQKLQQYNQKLKNVQKETTSSSDSKAKKDKM 120
+Y+KKEIAAQN VK EK+ +N VN KAE++QKL Q Q LK+V KETTS S+ + KKDK
Sbjct: 3765 MYSKKEIAAQNVVKTEKETMNIVNKKAESAQKL-QCKQSLKHVPKETTSWSNVEMKKDKQ 3824
Query: 121 KDSVKLSEAGEPSQQLLTEQKKLKQKDVKGDKGKQKVADQKFIAK 164
K S SEA EPSQQL EQKKLK+KDVK +KGKQKV D K AK
Sbjct: 3825 KISNNFSEAKEPSQQLQLEQKKLKKKDVKAEKGKQKVEDHKSTAK 3868
BLAST of Lsi11G000310 vs. NCBI nr
Match:
XP_023515720.1 (uncharacterized protein LOC111779783 isoform X3 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 145.2 bits (365), Expect = 5.7e-31
Identity = 101/155 (65.16%), Postives = 114/155 (73.55%), Query Frame = 0
Query: 1 MSTSEGSSQGLHFQPKQESVCKEKASQNDSKIGDNLKVA--PSISTTKDTSYKFQFKPKL 60
MST++GSSQGL FQPK E+VCK+KASQN+ K GD +KVA + T K +S K QFKPK+
Sbjct: 3669 MSTAKGSSQGLQFQPKNEAVCKKKASQNE-KTGDKMKVAHVHGMPTAKGSSNKLQFKPKV 3728
Query: 61 VYAKKEIAAQNDVKIEKDAVNNVNNKAEASQKLQQYNQKLKNVQKETTSSSDSKAKK-DK 120
V AKKEIA QNDVK EKD NV NKAE+ QKLQ Q L+ VQKETT SDSK KK DK
Sbjct: 3729 VSAKKEIATQNDVKTEKD-TKNVVNKAESGQKLQG-KQNLRYVQKETTCLSDSKVKKEDK 3788
Query: 121 MKDSVKLSEAGEPSQQLLTEQKKLKQKDVKGDKGK 153
MK LSEA E SQ L EQKKLKQKD+K +KGK
Sbjct: 3789 MKLFNNLSEAKESSQPLQLEQKKLKQKDIKAEKGK 3820
BLAST of Lsi11G000310 vs. NCBI nr
Match:
XP_023515693.1 (uncharacterized protein LOC111779783 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023515702.1 uncharacterized protein LOC111779783 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023515711.1 uncharacterized protein LOC111779783 isoform X1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 145.2 bits (365), Expect = 5.7e-31
Identity = 101/155 (65.16%), Postives = 114/155 (73.55%), Query Frame = 0
Query: 1 MSTSEGSSQGLHFQPKQESVCKEKASQNDSKIGDNLKVA--PSISTTKDTSYKFQFKPKL 60
MST++GSSQGL FQPK E+VCK+KASQN+ K GD +KVA + T K +S K QFKPK+
Sbjct: 3708 MSTAKGSSQGLQFQPKNEAVCKKKASQNE-KTGDKMKVAHVHGMPTAKGSSNKLQFKPKV 3767
Query: 61 VYAKKEIAAQNDVKIEKDAVNNVNNKAEASQKLQQYNQKLKNVQKETTSSSDSKAKK-DK 120
V AKKEIA QNDVK EKD NV NKAE+ QKLQ Q L+ VQKETT SDSK KK DK
Sbjct: 3768 VSAKKEIATQNDVKTEKD-TKNVVNKAESGQKLQG-KQNLRYVQKETTCLSDSKVKKEDK 3827
Query: 121 MKDSVKLSEAGEPSQQLLTEQKKLKQKDVKGDKGK 153
MK LSEA E SQ L EQKKLKQKD+K +KGK
Sbjct: 3828 MKLFNNLSEAKESSQPLQLEQKKLKQKDIKAEKGK 3859
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KQV9 | 5.2e-54 | 72.83 | AAA_12 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G266850 PE=4... | [more] |
A0A6J1GWV9 | 1.0e-30 | 63.23 | uncharacterized protein LOC111458260 isoform X1 OS=Cucurbita moschata OX=3662 GN... | [more] |
A0A6J1GWN5 | 1.0e-30 | 63.23 | uncharacterized protein LOC111458260 isoform X2 OS=Cucurbita moschata OX=3662 GN... | [more] |
A0A6J1DWW3 | 2.2e-28 | 64.12 | uncharacterized protein LOC111023887 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A5A7T398 | 1.8e-27 | 58.18 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
XP_031741284.1 | 1.1e-53 | 72.83 | uncharacterized protein LOC101212224 [Cucumis sativus] >XP_031741290.1 uncharact... | [more] |
KAE8648072.1 | 6.5e-51 | 73.30 | hypothetical protein Csa_018863 [Cucumis sativus] | [more] |
XP_038876924.1 | 2.6e-36 | 63.64 | uncharacterized protein LOC120069278 [Benincasa hispida] >XP_038876925.1 unchara... | [more] |
XP_023515720.1 | 5.7e-31 | 65.16 | uncharacterized protein LOC111779783 isoform X3 [Cucurbita pepo subsp. pepo] | [more] |
XP_023515693.1 | 5.7e-31 | 65.16 | uncharacterized protein LOC111779783 isoform X1 [Cucurbita pepo subsp. pepo] >XP... | [more] |
Match Name | E-value | Identity | Description | |