Lsi10G015960 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi10G015960
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLoricrin-like
Locationchr10: 20454511 .. 20454744 (+)
RNA-Seq ExpressionLsi10G015960
SyntenyLsi10G015960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGGCCAATTCTTGGTGCCGGCGGCGCTAGCTTCGGAGATGTCAACTTGGTGAGCTCCGGCGGCCTATTTTTGCTATCTGTCATCTTACTATCCATCTCTCTCATATCAATGGTCATATTTGCTTGTGGCGACTCCGGTGACCCTCAAAAGAAAAGATATAATGGCGGCGGTGGAGGTTGCGGCGGCGGAGGTTGTGGCGGCGGTGGCTGTGGTGGCTGTGGAGGTTGA

mRNA sequence

ATGGGAAGGCCAATTCTTGGTGCCGGCGGCGCTAGCTTCGGAGATGTCAACTTGGTGAGCTCCGGCGGCCTATTTTTGCTATCTGTCATCTTACTATCCATCTCTCTCATATCAATGGTCATATTTGCTTGTGGCGACTCCGGTGACCCTCAAAAGAAAAGATATAATGGCGGCGGTGGAGGTTGCGGCGGCGGAGGTTGTGGCGGCGGTGGCTGTGGTGGCTGTGGAGGTTGA

Coding sequence (CDS)

ATGGGAAGGCCAATTCTTGGTGCCGGCGGCGCTAGCTTCGGAGATGTCAACTTGGTGAGCTCCGGCGGCCTATTTTTGCTATCTGTCATCTTACTATCCATCTCTCTCATATCAATGGTCATATTTGCTTGTGGCGACTCCGGTGACCCTCAAAAGAAAAGATATAATGGCGGCGGTGGAGGTTGCGGCGGCGGAGGTTGTGGCGGCGGTGGCTGTGGTGGCTGTGGAGGTTGA

Protein sequence

MGRPILGAGGASFGDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNGGGGGCGGGGCGGGGCGGCGG
Homology
BLAST of Lsi10G015960 vs. ExPASy TrEMBL
Match: A0A6J5WYX6 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20264 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.7e-08
Identity = 48/78 (61.54%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 5  ILGAGGASFGDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNGGGGGC-- 64
          +LG G A    +   +SGG+FLL +IL+S+SLISMVIFACGD     KKRY GGGGG   
Sbjct: 8  VLGGGHAEELGIMQDNSGGIFLLCMILMSLSLISMVIFACGDDEGSSKKRYGGGGGGAAA 67

Query: 65 ---GGGGCGGGGCGGCGG 78
             GGGGCGGGG GGCGG
Sbjct: 68 AAGGGGGCGGGGGGGCGG 85

BLAST of Lsi10G015960 vs. ExPASy TrEMBL
Match: A0A5N5GBC1 (Loricrin-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_034934 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.6e-07
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 0

Query: 1  MGRPILGAGGASFGDVNLV----SSGGLFLLSVILLSISLISMVIFACGDSGDPQKKR-- 60
          M R  +G GG   G V+++    +SGGL LL +IL+S+SL+SMVIFACGD  D +++R  
Sbjct: 1  MARTYVGPGGGHAGGVDIMMPDHNSGGLLLLCMILMSLSLVSMVIFACGDGSDEKRRRPG 60

Query: 61 -----YNGGGGGCG---GGGCGGGGCGGCGG 78
                 GGGGGCG   GGGCG GG GGCGG
Sbjct: 61 RPGGVVGGGGGGCGGGSGGGCGDGGGGGCGG 91

BLAST of Lsi10G015960 vs. ExPASy TrEMBL
Match: A0A498JL81 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_016148 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 49/84 (58.33%), Postives = 58/84 (69.05%), Query Frame = 0

Query: 1  MGRPILGAGGASFGDVNLV----SSGGLFLLSVILLSISLISMVIFACGDSGDPQKKR-- 60
          M R  +G GG   G+V ++    +SGGL LL +IL+S+SLISMVIFACGDS    + R  
Sbjct: 1  MARTYVGLGGGHAGEVAIMMPDHNSGGLLLLCMILMSLSLISMVIFACGDSSGKPRPRGG 60

Query: 61 -YNGGGGGCGGGGCGGGGCGGCGG 78
           Y GG GGCGGGG GGGGCGG GG
Sbjct: 61 GYTGGAGGCGGGG-GGGGCGGGGG 83

BLAST of Lsi10G015960 vs. ExPASy TrEMBL
Match: A0A540MXA9 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_010997 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-06
Identity = 48/82 (58.54%), Postives = 57/82 (69.51%), Query Frame = 0

Query: 1  MGRPILGAGGASFGDVNLV----SSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYN 60
          M R  +G GG   G+V ++    +SGGL LL +IL+S+SLISMVIFACGDS    + R  
Sbjct: 1  MARTYVGLGGGHAGEVAIMMPDHNSGGLLLLCMILMSLSLISMVIFACGDSSGSPRPRPG 60

Query: 61 GGGGGCGGGGC-GGGGCGGCGG 78
          GGG G GGGGC GGGG GGCGG
Sbjct: 61 GGGWGGGGGGCGGGGGGGGCGG 82

BLAST of Lsi10G015960 vs. ExPASy TrEMBL
Match: A0A314XHT1 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_41258 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.6e-06
Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 0

Query: 5  ILGAGGASFGDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRY-NGGGGGCG 64
          +LG G A    +   +SGG+ LL +IL+S+SLISMVIFACGD     KKRY  GGGGGCG
Sbjct: 8  VLGGGHAEELGIMQDNSGGILLLCMILMSLSLISMVIFACGDDEGSSKKRYGGGGGGGCG 67

Query: 65 GGGCGGGGCG 74
          GGG GGGG G
Sbjct: 68 GGGGGGGGGG 77

BLAST of Lsi10G015960 vs. NCBI nr
Match: KAG6604774.1 (hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.6 bits (205), Expect = 8.3e-13
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 0

Query: 1  MGRPILGA--GGASFGDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNGG 60
          MGRPIL A  GG  F DV LVSSGGLFLLS ILLSISL+SM+IFACG+S DP++K   GG
Sbjct: 1  MGRPILAAAGGGGGFQDVTLVSSGGLFLLSAILLSISLVSMIIFACGNSNDPKRKDGGGG 60

Query: 61 -GGGCGGGGCG-GGGCGGCGG 78
           GGG GGGG G GGGCGGCGG
Sbjct: 61 CGGGDGGGGGGCGGGCGGCGG 81

BLAST of Lsi10G015960 vs. NCBI nr
Match: KAG6603229.1 (hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.4 bits (189), Expect = 6.0e-11
Identity = 50/77 (64.94%), Postives = 57/77 (74.03%), Query Frame = 0

Query: 1  MGRPILGAGGASFGDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNGGGG 60
          MGRPI  A G   GDV L SSGGL LL+ IL+S+SL+SM+IFACGDS    K++ NGGG 
Sbjct: 1  MGRPIPAADGGGLGDVTLFSSGGLLLLATILMSLSLVSMIIFACGDSSRKNKRKRNGGG- 60

Query: 61 GCGGGGCGGGGCGGCGG 78
            GG GCGGGGCGG GG
Sbjct: 61 --GGAGCGGGGCGGGGG 74

BLAST of Lsi10G015960 vs. NCBI nr
Match: KAG6603228.1 (hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.3 bits (181), Expect = 5.0e-10
Identity = 52/80 (65.00%), Postives = 59/80 (73.75%), Query Frame = 0

Query: 1  MGRPILGAGGASFGDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNGGG- 60
          MGR I  A G   GDV L SSGGL LL+ +LLS+SL+SM+IFACGDS    K++ NGGG 
Sbjct: 1  MGRSIPAADGGGLGDVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRNGGGC 60

Query: 61 GGCGGGGCGG--GGCGGCGG 78
          GG GGGGCGG  GG GGCGG
Sbjct: 61 GGGGGGGCGGDVGGGGGCGG 80

BLAST of Lsi10G015960 vs. NCBI nr
Match: CAB4273122.1 (unnamed protein product [Prunus armeniaca] >CAB4303638.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-07
Identity = 48/78 (61.54%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 5  ILGAGGASFGDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNGGGGGC-- 64
          +LG G A    +   +SGG+FLL +IL+S+SLISMVIFACGD     KKRY GGGGG   
Sbjct: 8  VLGGGHAEELGIMQDNSGGIFLLCMILMSLSLISMVIFACGDDEGSSKKRYGGGGGGAAA 67

Query: 65 ---GGGGCGGGGCGGCGG 78
             GGGGCGGGG GGCGG
Sbjct: 68 AAGGGGGCGGGGGGGCGG 85

BLAST of Lsi10G015960 vs. NCBI nr
Match: KAB2612618.1 (loricrin-like [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-06
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 0

Query: 1  MGRPILGAGGASFGDVNLV----SSGGLFLLSVILLSISLISMVIFACGDSGDPQKKR-- 60
          M R  +G GG   G V+++    +SGGL LL +IL+S+SL+SMVIFACGD  D +++R  
Sbjct: 1  MARTYVGPGGGHAGGVDIMMPDHNSGGLLLLCMILMSLSLVSMVIFACGDGSDEKRRRPG 60

Query: 61 -----YNGGGGGCG---GGGCGGGGCGGCGG 78
                 GGGGGCG   GGGCG GG GGCGG
Sbjct: 61 RPGGVVGGGGGGCGGGSGGGCGDGGGGGCGG 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J5WYX66.7e-0861.54Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20264 PE=4 S... [more]
A0A5N5GBC19.6e-0752.75Loricrin-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_034934 P... [more]
A0A498JL811.3e-0658.33Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_016148 PE=4 SV=1[more]
A0A540MXA91.6e-0658.54Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_010997 PE=4 SV=1[more]
A0A314XHT13.6e-0661.43Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_412... [more]
Match NameE-valueIdentityDescription
KAG6604774.18.3e-1374.07hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603229.16.0e-1164.94hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603228.15.0e-1065.00hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sorori... [more]
CAB4273122.11.4e-0761.54unnamed protein product [Prunus armeniaca] >CAB4303638.1 unnamed protein product... [more]
KAB2612618.12.0e-0652.75loricrin-like [Pyrus ussuriensis x Pyrus communis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35420OS02G0198500 PROTEINcoord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G015960.1Lsi10G015960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane