Lsi10G015550 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G015550
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Transcription elongation factor B polypeptide 3 isoform X2
Location	chr10: 19979210 .. 19982959 (-)
RNA-Seq Expression	Lsi10G015550
Synteny	Lsi10G015550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACATAGGGTATTTCTTGTCAATAAACTAATTTTTGGCGTCGGGAATTGTAACTTTTATCGCCAATTTCAGCCGTTGCAAGATCAATTTTTTCAAAGAGCTTTTTTGCGTCAGATTTTTACAACGAGGCTTTCCCAACAACTTGCCGACGGTAAAAAAAAAGCTTCCTCGATGTTTTTTTTTTGAATTTTTCCAAAAGAAGTATAATTTCTTGTAGTGACATTGTTAGAATAATCTATTTTATATTGATATTTTACATTAATTCTTGCATTTAAAAAGTCCTCCACACATGGGAATACCACAAAATTCAAAAGGATAGTGTAAATTGGTTCCCAATTTAGGTTTTAAATCGATAAGATTATTATTTCAATTATAAATTTCAGAAAAAAAAAATTAAAATACGAAATCGTTACTAACCTATTTATTTATTTATCTATCTTAGAAAAGAAAATAGTTATTTTTGTTAAGAAAAAAAACAAAAAAAATAGTTATTAAACAAAGCTGTAGTAGTTATTTATTTTATTTTATTGATGAGACTTATTTAACGAAAAATTTTTACATATAGAAAGAATGTCAAATTATTTACAGAGAAAAGAAAACACAGATAGACATTAATATACTTCTATCAGCATCAGACTTCTATTATCTATCACAACTATCTAAAAATTTTACTATAAATACTTTTTCTTATTTTTTTATTTTTAAAAACTTCCCTTAACCAGCGGCGCAATATAGCCAGTTGGGAAAGAATATCGCAAATTATGAGAAGGTAATCAGATGAGGATTGCAGGCCAATTCGTTCATTTCTAGTTCAACGATCGTTCTCCTCCTTCAACGATTCTCGTCTTCCTCTTCTCAGACTGTCGGTAAGGTCCCCAATATCTCAATTTATCGATCTCCCTCAGTTCATTTTCAATAGAAATTGTTGAATCGATTTCTTGATTTCGTTTTTTCTTTTCTTTTCAATTTTTCCTTTATGTTTAGGACGATCGAATACGATATCTATAATAATCATATTTTTATGAATCAGATCTGTTTATTTCTTGCGTTGATTATCTATTGAATGAATTTAGGATCGTTTGCATTGATGATAAAAAAAAGAATCATATTTTTAGGATCGTTTTTCCTGAAGTTGTTGAACTCGATTCTCATATCTAAATGTTCTGAATTACGAAATTGCTTAGCTGAGCAGAAAAGGTTTGGAATTATTGGGTTTTTTTACACTCGTTTTGCTTGCTTGATCGCCGAGTTATTTTGCTGTCTGTCTTATATTCTGATTGGTTGCTTAAAGCTAAGAGCTATTTAAGATGCTGTATATTCAGGTACTTCTTTGTGAAGCGTATGGAATTTAGTTAATTAAGGGTCAATTTTACAGCTTGATTTTTTTTCTTGTAGTGGAGTTGGTTACCTGTTACCAGCTATGTTTACCGGTGTATTTATTAAATCAGTATTTTGTCTACTTATGTAAATTGATTGGTATGTTTCTTTCTTGTTCTTAGCTTGGCAACCTGAGAAAGAAGAGATGTATCGAGTAAGAAAAATTCCATCGTTGGTTGATCTTTGTGTTAACAAAGCTATAGATAATCTAAGGTTCCTTGGGGATGTTGGTGAAACTGATATACATCTTCTAGACCGTATTTTGCCACATTGCACAGTTGACCAATTAATGCATGTGGAGAAGAGTTCAGAAGTAAGATCGGATGAATTTGCTTCTTGTTTTTAACTATCTAGTTTTGTTTTAGTATGTATTCTCAATTGAGTATGGACTTCTTACAGGGAAGAGATCTGACTCCAATAACTGATAAATTGTGGAAAAAATTCTATGAAAGACAGTTTGGTAAAGAAAGTACTACTACTGTAATTGAGAGGATGCGGCAAAAAAGAGTGGCATTTAGATGGATTCAATTGTATGAGGTAACTTTCCTTTTACTTCTCTTCTCATGCGATTTACTTTGATATTTGAGTATTGAATGACGGTTAGCATGATAAGTGATTCCTCTGAGAAGCCATTAAAATGAAGCTATCTATTTTCAGGCGAAGATGAAGGACATTGAAAAGAATGAGAGCAAAGCTGCAGATCGAATAAAACAAAGCTACCAAAAGGAAAATGCCCGTATGTTCTATAACATATTTGCACTCTCTAATGTATTTCCTCATAATTTTAAATTTGAACTAACAATTAGCTAGAGCATACTATGAATGTTATCTGGAAATTGTTTCCACTCGCAACTGTCCTATATAAGAGGTATACTACTGGTTCATCTATGAATAGATATTATTGATTTTTACATGTATTTTAGGAATCGTTAGTGTTTTTGTTCAGGGGATATTTTCTTAACATATGAGATTTTAAAGATTACCATGAACATTTTAGGAAAACAAAGTCGTCAAATACAGATTTGCAGTAAGGTCCCCCCCTCGAGCAATAAGAGAAGCTTTGGAGGTAAACTTTATTTAGTAGATTCTAGCTTTGGCAAGGCTGCAGCTGACACTTGCAAAGAAAAAAAAAAATTTACATGTTATTTTTTTCTCTTGATTTGTCGTAGGAATTGGATATGGCTACAATGTGGCAAACACTAAGAACAAGATACTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGGTAAAACTATTAAACTGATACTGAGAGTGAAAATAATTTGCATAACTATGATTAAAAAATGATCGTACAGTTTATAGCCTGATGCTTGCTTAGAGGCATTGCCTAAAATCTAATATGCCTTACAGAAAATTAAGCATGCAAGCACCTAAAATTTGATCCATCTTGGCTTAGGATCTGATAAATCGGCAGATCAAATTAATGATATGGCTTGGCTTTTTTCATCTATATTAAAGCTTTTATACCAAAATAATTCTTGAGCGGTAGCTTTTTGCAAGCTTCATAACAGATAATGGTTCCTATAACTGGGTGATTCGTAATTTAATCATGGAAGAATGTCTATGTAGATCCTTGATCACATCTCCGAAGCCCAATCTGACTAAATCCTAGAATCAATAGCTCTCATTTATAAACTGTGCTTACCCCTCCACGCTTGAAGCAAAGCCCTATTTCATAACTGTTAATGAAAAGTTATCCAATCCTGATACCTTCTTATCTTTGGACAGTCAAGAGATGAAAAATATAAAAGCCTGGCGGAGAAATGCGGTGCAGAAGAGTTCCGAGTAAGTTGCAATTGTTTGTACTATCATTCTCAATGCTTTCGAAGCCTCCTAAAACTCAATGATGACGTTCACTTTGCCCCTTTGATTTTGCAGTATTTCCACAAAGAAGCCAATGTTTTCTGGAAGGGAATCCGCTTCAACTTCAAATACTTCCAGTCATATGACCAGAAGATGGTAGCACTTTCATTAGCTTTGCTTTTTTCTTTTTATTCTTTTTTTACCAAATGCAAGGATCTGTTCTCTCACTCAGCCCCAAGGCTGTATCTTATCTTCAATTTAGTTATTTGATGGTTTGATAATTGCTCCTTTCCCCTCCTTCACTGGACACTTCTGAATGCCATGCCCTGTGTATAACCTTATAATTCGTAGCCCTCTCTTATAGTGCAATGTGTAGCTTTCTCTTATAGTGCAATGTTGTTTATTTTACATGAACTTTCTCGCAGTATTTTTTTTAAGGTTTAATTATAAATTTGGTCCCTATGATTTGGAAAAAGTTAGAATTTAGTCTCAATAGTTTTAAAAGTTAGAGTTTAGTCTTTATGGTTTGATAAAATTCTCATACATAGTCC

mRNA sequence

GACATAGGGTATTTCTTGTCAATAAACTAATTTTTGGCGTCGGGAATTGTAACTTTTATCGCCAATTTCAGCCGTTGCAAGATCAATTTTTTCAAAGAGCTTTTTTGCGTCAGATTTTTACAACGAGGCTTTCCCAACAACTTGCCGACGCGGCGCAATATAGCCAGTTGGGAAAGAATATCGCAAATTATGAGAAGGTAATCAGATGAGGATTGCAGGCCAATTCGTTCATTTCTAGTTCAACGATCGTTCTCCTCCTTCAACGATTCTCGTCTTCCTCTTCTCAGACTGTCGCTTGGCAACCTGAGAAAGAAGAGATGTATCGAGTAAGAAAAATTCCATCGTTGGTTGATCTTTGTGTTAACAAAGCTATAGATAATCTAAGGTTCCTTGGGGATGTTGGTGAAACTGATATACATCTTCTAGACCGTATTTTGCCACATTGCACAGTTGACCAATTAATGCATGTGGAGAAGAGTTCAGAAGGAAGAGATCTGACTCCAATAACTGATAAATTGTGGAAAAAATTCTATGAAAGACAGTTTGGTAAAGAAAGTACTACTACTGTAATTGAGAGGATGCGGCAAAAAAGAGTGGCATTTAGATGGATTCAATTGTATGAGGCGAAGATGAAGGACATTGAAAAGAATGAGAGCAAAGCTGCAGATCGAATAAAACAAAGCTACCAAAAGGAAAATGCCCGAATTGGATATGGCTACAATGTGGCAAACACTAAGAACAAGATACTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGTCAAGAGATGAAAAATATAAAAGCCTGGCGGAGAAATGCGGTGCAGAAGAGTTCCGATATTTCCACAAAGAAGCCAATGTTTTCTGGAAGGGAATCCGCTTCAACTTCAAATACTTCCAGTCATATGACCAGAAGATGGTAGCACTTTCATTAGCTTTGCTTTTTTCTTTTTATTCTTTTTTTACCAAATGCAAGGATCTGTTCTCTCACTCAGCCCCAAGGCTGTATCTTATCTTCAATTTAGTTATTTGATGGTTTGATAATTGCTCCTTTCCCCTCCTTCACTGGACACTTCTGAATGCCATGCCCTGTGTATAACCTTATAATTCGTAGCCCTCTCTTATAGTGCAATGTGTAGCTTTCTCTTATAGTGCAATGTTGTTTATTTTACATGAACTTTCTCGCAGTATTTTTTTTAAGGTTTAATTATAAATTTGGTCCCTATGATTTGGAAAAAGTTAGAATTTAGTCTCAATAGTTTTAAAAGTTAGAGTTTAGTCTTTATGGTTTGATAAAATTCTCATACATAGTCC

Coding sequence (CDS)

ATGTATCGAGTAAGAAAAATTCCATCGTTGGTTGATCTTTGTGTTAACAAAGCTATAGATAATCTAAGGTTCCTTGGGGATGTTGGTGAAACTGATATACATCTTCTAGACCGTATTTTGCCACATTGCACAGTTGACCAATTAATGCATGTGGAGAAGAGTTCAGAAGGAAGAGATCTGACTCCAATAACTGATAAATTGTGGAAAAAATTCTATGAAAGACAGTTTGGTAAAGAAAGTACTACTACTGTAATTGAGAGGATGCGGCAAAAAAGAGTGGCATTTAGATGGATTCAATTGTATGAGGCGAAGATGAAGGACATTGAAAAGAATGAGAGCAAAGCTGCAGATCGAATAAAACAAAGCTACCAAAAGGAAAATGCCCGAATTGGATATGGCTACAATGTGGCAAACACTAAGAACAAGATACTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGTCAAGAGATGAAAAATATAAAAGCCTGGCGGAGAAATGCGGTGCAGAAGAGTTCCGATATTTCCACAAAGAAGCCAATGTTTTCTGGAAGGGAATCCGCTTCAACTTCAAATACTTCCAGTCATATGACCAGAAGATGGTAG

Protein sequence

MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIKQSYQKENARIGYGYNVANTKNKILKKAKIEVLQSQEMKNIKAWRRNAVQKSSDISTKKPMFSGRESASTSNTSSHMTRRW

Homology

[Close]

BLAST of Lsi10G015550 vs. ExPASy TrEMBL
Match: A0A5D3BGR1 (Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00180 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.4e-94
Identity = 190/225 (84.44%), Postives = 196/225 (87.11%), Query Frame = 0


Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TP+TDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QSYQKENAR-----------------------IGYGYNVANTKNKILKKAKIEVLQSQEM 180
           QSY KENAR                        GYGYNVANTKNKILKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKSSDI-STKKPMFSGRESASTS-NTSSHMTRRW 201
           KNIKAWRRNAVQKSSDI STKKPMF GRESASTS NTS+HM +RW
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKNTSTHMAKRW 225

[Close]

BLAST of Lsi10G015550 vs. ExPASy TrEMBL
Match: A0A1S4E1U0 (transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.6e-93
Identity = 189/224 (84.38%), Postives = 195/224 (87.05%), Query Frame = 0


Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TP+TDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QSYQKENAR-----------------------IGYGYNVANTKNKILKKAKIEVLQSQEM 180
           QSY KENAR                        GYGYNVANTKNKILKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKSSDI-STKKPMFSGRESASTS-NTSSHMTRR 200
           KNIKAWRRNAVQKSSDI STKKPMF GRESASTS NTS+HM +R
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKNTSTHMAKR 224

[Close]

BLAST of Lsi10G015550 vs. ExPASy TrEMBL
Match: A0A1S3C4D6 (transcription elongation factor B polypeptide 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.6e-93
Identity = 189/224 (84.38%), Postives = 195/224 (87.05%), Query Frame = 0


Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TP+TDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QSYQKENAR-----------------------IGYGYNVANTKNKILKKAKIEVLQSQEM 180
           QSY KENAR                        GYGYNVANTKNKILKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKSSDI-STKKPMFSGRESASTS-NTSSHMTRR 200
           KNIKAWRRNAVQKSSDI STKKPMF GRESASTS NTS+HM +R
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKNTSTHMAKR 224

[Close]

BLAST of Lsi10G015550 vs. ExPASy TrEMBL
Match: A0A6J1I4W9 (transcription elongation factor B polypeptide 3 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469662 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 2.1e-85
Identity = 172/224 (76.79%), Postives = 189/224 (84.38%), Query Frame = 0


Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MY VRK+PSLVDLCV KAIDNLRFLGDVGETD+HLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TP+TDKLWKKFYERQFG+EST  V ERM++K+VAFRWIQLYEAKMKDIEKNES+AADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGRESTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120

Query: 121 QSYQKENAR----------------------IGYGYNVANTKNKILKKAKIEVLQSQEMK 180
           QSY KENAR                       GYG NV NTKNK+LKK+KIEVLQSQEMK
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGAGYGSNVTNTKNKLLKKSKIEVLQSQEMK 180

Query: 181 NIKAWRRNAVQKSSDI-STKKPMFSGRESASTS-NTSSHMTRRW 201
           NIKAWRRNAVQK+ DI STKKPMFSGR+SASTS +T++HM R+W
Sbjct: 181 NIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 224

[Close]

BLAST of Lsi10G015550 vs. ExPASy TrEMBL
Match: A0A6J1I1I3 (transcription elongation factor B polypeptide 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469662 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.7e-85
Identity = 172/225 (76.44%), Postives = 189/225 (84.00%), Query Frame = 0


Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MY VRK+PSLVDLCV KAIDNLRFLGDVGETD+HLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TP+TDKLWKKFYERQFG+EST  V ERM++K+VAFRWIQLYEAKMKDIEKNES+AADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGRESTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120

Query: 121 QSYQKENAR-----------------------IGYGYNVANTKNKILKKAKIEVLQSQEM 180
           QSY KENAR                        GYG NV NTKNK+LKK+KIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGAAGYGSNVTNTKNKLLKKSKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKSSDI-STKKPMFSGRESASTS-NTSSHMTRRW 201
           KNIKAWRRNAVQK+ DI STKKPMFSGR+SASTS +T++HM R+W
Sbjct: 181 KNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARKW 225

[Close]

BLAST of Lsi10G015550 vs. NCBI nr
Match: XP_004143189.1 (transcription elongation factor B polypeptide 3 isoform X1 [Cucumis sativus] >KAE8646931.1 hypothetical protein Csa_021040 [Cucumis sativus])

HSP 1 Score: 359.0 bits (920), Expect = 2.7e-95
Identity = 193/225 (85.78%), Postives = 197/225 (87.56%), Query Frame = 0


Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TP+TDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK 120

Query: 121 QSYQKENAR-----------------------IGYGYNVANTKNKILKKAKIEVLQSQEM 180
           QSY KENAR                        GYGYNVANTKNKILKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKSSDI-STKKPMFSGRESASTS-NTSSHMTRRW 201
           KNIKAWRRNAVQKSSDI STKKPMFSGRESASTS NTS+HM +RW
Sbjct: 181 KNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKRW 225

[Close]

BLAST of Lsi10G015550 vs. NCBI nr
Match: XP_038900478.1 (transcription elongation factor B polypeptide 3-like isoform X1 [Benincasa hispida] >XP_038900479.1 transcription elongation factor B polypeptide 3-like isoform X1 [Benincasa hispida] >XP_038900480.1 transcription elongation factor B polypeptide 3-like isoform X1 [Benincasa hispida])

HSP 1 Score: 357.1 bits (915), Expect = 1.0e-94
Identity = 194/225 (86.22%), Postives = 196/225 (87.11%), Query Frame = 0


Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK
Sbjct: 61  TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120

Query: 121 QSYQKENAR-----------------------IGYGYNVANTKNKILKKAKIEVLQSQEM 180
           QSYQKENAR                         YGYNVANTKNKILKKAKIEVLQSQEM
Sbjct: 121 QSYQKENARKQSRQIQICSKVPPSSNKRSFGGSVYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKSSDI-STKKPMFSGRESASTS-NTSSHMTRRW 201
           KNIKAWRRNAVQKSSDI STKKPMFSGRESASTS NTS+ M +RW
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFSGRESASTSKNTSTQMAKRW 225

[Close]

BLAST of Lsi10G015550 vs. NCBI nr
Match: TYJ98274.1 (transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 354.8 bits (909), Expect = 5.0e-94
Identity = 190/225 (84.44%), Postives = 196/225 (87.11%), Query Frame = 0


Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TP+TDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QSYQKENAR-----------------------IGYGYNVANTKNKILKKAKIEVLQSQEM 180
           QSY KENAR                        GYGYNVANTKNKILKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKSSDI-STKKPMFSGRESASTS-NTSSHMTRRW 201
           KNIKAWRRNAVQKSSDI STKKPMF GRESASTS NTS+HM +RW
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKNTSTHMAKRW 225

[Close]

BLAST of Lsi10G015550 vs. NCBI nr
Match: XP_016901950.1 (PREDICTED: transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo])

HSP 1 Score: 350.5 bits (898), Expect = 9.5e-93
Identity = 189/224 (84.38%), Postives = 195/224 (87.05%), Query Frame = 0


Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TP+TDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QSYQKENAR-----------------------IGYGYNVANTKNKILKKAKIEVLQSQEM 180
           QSY KENAR                        GYGYNVANTKNKILKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKSSDI-STKKPMFSGRESASTS-NTSSHMTRR 200
           KNIKAWRRNAVQKSSDI STKKPMF GRESASTS NTS+HM +R
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKNTSTHMAKR 224

[Close]

BLAST of Lsi10G015550 vs. NCBI nr
Match: XP_008456387.2 (PREDICTED: transcription elongation factor B polypeptide 3 isoform X1 [Cucumis melo])

HSP 1 Score: 350.5 bits (898), Expect = 9.5e-93
Identity = 189/224 (84.38%), Postives = 195/224 (87.05%), Query Frame = 0


Query: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLL+RILPHCTVDQLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 61  TPITDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 120
           TP+TDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 121 QSYQKENAR-----------------------IGYGYNVANTKNKILKKAKIEVLQSQEM 180
           QSY KENAR                        GYGYNVANTKNKILKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 181 KNIKAWRRNAVQKSSDI-STKKPMFSGRESASTS-NTSSHMTRR 200
           KNIKAWRRNAVQKSSDI STKKPMF GRESASTS NTS+HM +R
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKNTSTHMAKR 224

[Close]

BLAST of Lsi10G015550 vs. TAIR 10
Match: AT2G42780.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). )

HSP 1 Score: 161.8 bits (408), Expect = 5.8e-40
Identity = 88/211 (41.71%), Postives = 130/211 (61.61%), Query Frame = 0


Query: 5   RKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPIT 64
           +K PSLVDLCV KAIDN++++G VG  D  LL++IL HCT++QL H+E +++  DL+PIT
Sbjct: 8   KKPPSLVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPIT 67

Query: 65  DKLWKKFYERQFGKESTTTVIERMRQKRV-AFRWIQLYEAKMKDIEKNESKAADRIKQSY 124
           DK WK FY++ +G+E    +IE +   +V  F+W  LYE K+  +++ E +   R+K+ Y
Sbjct: 68  DKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERY 127

Query: 125 QKENAR----------------------IGYGYNVANTKNKILKKAKIEVLQSQEMKNIK 184
           + EN R                         GYN+ + K+ I+KKAKI++L+SQE+KN+ 
Sbjct: 128 KDENERKQSRQTKVCSKAPPSKRPFWGNSASGYNLGHVKSNIMKKAKIDLLKSQEVKNLT 187

Query: 185 AWRRNAVQKSSDISTKKPMFSGRESASTSNT 193
           A +RN +QKS  IST K       S STS +
Sbjct: 188 AIKRNTIQKSFSISTPKKTGLSANSPSTSRS 218

[Close]

BLAST of Lsi10G015550 vs. TAIR 10
Match: AT2G42780.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684). )

HSP 1 Score: 158.3 bits (399), Expect = 6.4e-39
Identity = 86/211 (40.76%), Postives = 129/211 (61.14%), Query Frame = 0


Query: 5   RKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDLTPIT 64
           +K PSLVDLCV KAIDN++++G VG  D  LL++IL HCT++QL H+E +++  DL+PIT
Sbjct: 8   KKPPSLVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPIT 67

Query: 65  DKLWKKFYERQFGKESTTTVIERMRQKRV-AFRWIQLYEAKMKDIEKNESKAADRIKQSY 124
           DK WK FY++ +G+E    +IE +   +V  F+W  LYE K+  +++ E +   R+K+ Y
Sbjct: 68  DKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERY 127

Query: 125 QKENAR----------------------IGYGYNVANTKNKILKKAKIEVLQSQEMKNIK 184
           + EN R                         GYN+ + K+ I+KKAKI++L+SQE+KN+ 
Sbjct: 128 KDENERKQSRQTKVCSKAPPSKRPFWGNSASGYNLGHVKSNIMKKAKIDLLKSQEVKNLT 187

Query: 185 AWRRNAVQKSSDISTKKPMFSGRESASTSNT 193
           A +RN +QKS  IS  K       + STS +
Sbjct: 188 AIKRNTIQKSFSISAPKRTGLSANAPSTSRS 218

The following BLAST results are available for this feature:

BLAST of Lsi10G015550 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi10G015550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BGR1	2.4e-94	84.44	Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. ...	[more]
A0A1S4E1U0	4.6e-93	84.38	transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=36...	[more]
A0A1S3C4D6	4.6e-93	84.38	transcription elongation factor B polypeptide 3 isoform X1 OS=Cucumis melo OX=36...	[more]
A0A6J1I4W9	2.1e-85	76.79	transcription elongation factor B polypeptide 3 isoform X2 OS=Cucurbita maxima O...	[more]
A0A6J1I1I3	2.7e-85	76.44	transcription elongation factor B polypeptide 3 isoform X1 OS=Cucurbita maxima O...	[more]

BLAST of Lsi10G015550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143189.1	2.7e-95	85.78	transcription elongation factor B polypeptide 3 isoform X1 [Cucumis sativus] >KA...	[more]
XP_038900478.1	1.0e-94	86.22	transcription elongation factor B polypeptide 3-like isoform X1 [Benincasa hispi...	[more]
TYJ98274.1	5.0e-94	84.44	transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. ma...	[more]
XP_016901950.1	9.5e-93	84.38	PREDICTED: transcription elongation factor B polypeptide 3 isoform X2 [Cucumis m...	[more]
XP_008456387.2	9.5e-93	84.38	PREDICTED: transcription elongation factor B polypeptide 3 isoform X1 [Cucumis m...	[more]

BLAST of Lsi10G015550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42780.1	5.8e-40	41.71	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]
AT2G42780.2	6.4e-39	40.76	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 98..118
None	No IPR available	GENE3D	6.10.250.3180		coord: 21..127 e-value: 2.1E-21 score: 77.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..200
None	No IPR available	PANTHER	PTHR47543	OS08G0169600 PROTEIN	coord: 132..197 coord: 3..129
IPR010684	RNA polymerase II transcription factor SIII, subunit A	PFAM	PF06881	Elongin_A	coord: 26..128 e-value: 7.6E-25 score: 87.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G015550.1	Lsi10G015550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
biological_process	GO:0006414	translational elongation
cellular_component	GO:0070449	elongin complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003746	translation elongation factor activity