Lsi10G014370 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G014370
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	30S ribosomal protein S18
Location	chr10: 18451333 .. 18455767 (-)
RNA-Seq Expression	Lsi10G014370
Synteny	Lsi10G014370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGTACGTACTTTTTTTATATTTGAAAATAAATATTAAATCAAATAGGAAGTTTATGAATGTGTCAATATGAATATACTTCAAAGACGGGAAGTATATATCGCGGAATAGAGAAAGACGAGAAAGGAGAGAGATGAAGAAGAGGGGATGAAAATAAAAAAAAAGGCAAATTGCAAAAACTACTCTTGAAATATGGTGATAGTTGCAAGTAGACCCTCAAACTTTCAATTGTAAAAATCAGGCTTTCAAACTTCTACAAATGTTAAAATTGGACCCTCTAACTTATAAGAATTGTAGAAACTAGACTCTCAAATGATAAAAATTGAACCTCAAATTGATATAGTTGTTACCATTTATACAATTATGTAAACTCGAGGGTTTAATTTTAGTATTTATATAAATTTGAAGGCTCAATTTTTACAATTGAAAGTTTAAGGGTACAATTAGAACCATCACTATATTTTAGGAGTGGTTTTTGTAATCTGTAAAAAAAAAAAAAAAAAGAAAAAAAAAAGAAAAAAATAATCGCAGTGGCAGCTATGAGAGGGAGAAAGGAGAGAAAGTGGAAAAAAATATTCAAAAGTTTTTTCTTCTTCTAATCATTAAAAAAAAAAGGATTTTTTAGAAACAAAGAAGGGGTGTCACATCAATTTTCTATTAGAAATTAATAGAAAAATTGACGGAGAGGCCTAAGGTACTACCAAAAGCAAATTCAATAAAATTGTTAAATTTGACAATATAGAAACTCAAATACAACCTAAACCAGACTTTAATTATATAAAAAAAAATGTAATTTTATAATAAATAAGAAAATTAAAGTGTATAACAACATTTTAGGTTTTTGACAAGAACCGAATTAAAAAATTAGATGTAAATTTTCTTTTTGAAATATGTAGTCTGAATCTAATCTTCAATTTCAAAGTGTTATCTAATTTTTCGGATTTTTTCATGTTTTTCTACTAATTTTAATTTTCTAATGCTTTTTATACCTACTCTACCACAATTCCATTTAATCACATGGGCGAGCCCAAGATGGTCATTTGACTCGACTTTCGTACGTGGCGTTTGGGCCAACTGGGCCTAAGCCAAGGTGTCTTGTTGGGCCTTTCAAGGCCCATTTCCCTCCTTTCAGTTTCCCCTTTTACCTTTGCCGATTTCGCTCCCCTTCGTCTCGATCTTCTTATCTCCTTCACCACACCGCTTGCAACTTTGTTCCCTCACCGTCGATCTCCCCACGGCGGCTTTCTCATTCCACTCCATCGACCTCCCTCCGTCTCTCTTCGTCTACCTCATTGTCTTTCTCTGTTTAATCTCAGATCAGTGGCAGTGAGTCCAAACTCCAAACGCAAGTCTTCACTCTTCTCAGGCTCTGCTACTTCTTCGTTCTGTTGCGAAATGAGAACCGTTCAGGTTGCTTTGCGAACCCTTGGCGGTGGCCTATCGCGGAGATTAAAGCAACCTTCTGTGCTCAGAAACCTTTCCACAAACGCCGCTCGTGGTAATTTCCACTTGTTTTGTTGAATTTGAATCCATGAATTTATGATTTATACTGTGATTGCTGAAGTTCTTTTCGACTTGAGCGGAAATTCGTCAGGTTTATTCTGAGCTAATGTTGCTCAAATCTGTTTCCGTTTGGATATTGGTCTAGCAAAACCTCATGTTTGGTTGTATGAATGATAATGTGCTTCAGGGCATGTATTTTACAACTTTCGTGTTTAAAACTTTTAAACAGATAGTGTCTTTGATGGTGATAAGGGAAAACCTGATTCATTTGAGTCTGCTGATGACTTCGAACGTCGGATATTTGGGGGTGTTTCTTTGGGCGGTTCCGGAAATGATGCTTTCTTTGAGAAGCTTGATAGACTTGGCAAACCTCGTGAAAGAATAGGCTCGAGACTGAGTGGAGGAAACAATTTTCATACGTTGGATGGTCTTCAAGATAATATTAACACGCTGTCAGATGGGATGGATGGCAAGTTGAAGAAAGCTTCCACTTATTTTGAGTTTGATCCCGAGGAAATAGAAAAACCTGATTATGCTTTCAGAGCAGATATGTCTTTTAAGCCTAGATCAACATACGAAATCAAGGCATGTAGCTGAGCGACTATATTTTTTATTTCTAAACTTGTTAAGAACAGACATTTATCGTTCATTGCTTCTATTTTTTATTACACTGTCATTACATGATGCCAATCCGAGCATAGCTAGGCACATATTACCATAAAAAAAATTATAATTACATCACCTAAAAAATTACTTTTACTAGAGCCAATCCATGTTTCCTTCAAGAAGCATCCTAGGCGAGTTTTATGGCCAACTGTGTCTGGATGGTTACATTCAGATTGGATGATCTGTGATGGATATGAACTTCACTATATTATCATTTTGCACCTTCTGTAGATGATTTTTTGTTATATTACCATTATTCTAAGTAATTTAGAATGTATACAGGATCTGGATCTAACAAAGCCAGGTGTACGTAAGCCCCCCAAATGGGAAGAGTTTCAGGTGACAACGGAGGAGGCCTTACGAAAAGCTGATTTCAGGGTGAGCATTCCTGAATTTCATTTACCTTGCCATTATGGATAGCTAGGACTAGGACTAAAACATGGTCAGAATTAGTGGTATGGTAACATCCGTCTTGATCCGTTGCAATCTTCTCTCATAGCTACCCCTAGTTGATTATGGAATATCTTATGGTATGAACTTCTCATCTCTTAAGTATCATAGCTTATGAACTGAAAAAAACACAAGGGTCGTCATAGGTTTAAAAGGAAATCCTTGATTTTGAATCTAGTCAATTTGAGTAGTTTAGAAATTTTGAAGTACAAGAAGCGACAAGTTGGAATAGGATTGTTTACTGCTGGTTTTCTGCACAGTTCCATTTAAGAAGTCTGGCAGGGAGTATACATCTGTGTTTTTATTAAAACTGTCCAATCCTGGAACAGGAGGAGCCATCCCGTTTGAAGTTTGGTCTGTCATGATAGACATAGTGTAGTCATCAGTGTCCATGGACCATCAAATTTTTTATATAAATTGCAGTTAATCAATTTACGAGTTTCTGATCTGGACAGTGCGTGGTTGTATTTTTCAATCAAGAAAGTAAGATCATGCAACGGCCTCTAAGAGTTTCTAACAGTTGCTCGTTTGCAACATTATCTGGTCATGGAATTATTACTAATCATTTTCAGTGCTACCAAAAAATAGTCTGGCCATAAGTTTGTCTTTGAGGCCATTGAAATTTAGTCTTGTCCAAAGCTCTATTTAGGAAGTTTATTTACGATATAGATTTCCTGTCCAAGCAAATAAAATACGGGATGGGAGTTAAATCGTATTTTATGTCTCTTACCAGCTTTAGGCATATCTAACGAGTGAGTAGTTGTTTGCAGAATGTTAGGTTTCTGGCGAACTTTATAACTGAGGCCGGGATCATGAAGAAGAGGAGTATGGTAAACTTTTTGAACAAAAATCAGGTTTTGAACGAGTTGAGCCGTCATCCTTCATCTTATTTTATCACTTCATCCATTTGCAGACAGGTATTAGTGCCAAGGCACAGAGGAAAGTCGCACGCGAGATCAAAACTGCACGAGCATTTGGCTTAATGCCCTTCACAACAATGGGAACGAAATCATTTATTTTTGGCAAAACCATGGAGAATCTTGATAGCGACTATGAGTACGAAGTTTTTGACAATAATGCTGATGCAGATGGAGGACGCCCACTCAGATCCCAAAGACCACGCTTTTAGATGGTTGTGAATGTGAATTATTTCCCTCACCCTTATTATCTTTCTTCGAAGATAGTATGCATCTGCTGCCATTTGATCCAACCATTAGCTTAAGTATTACAGGGCTGAGCTTTGTTTGATTGCTTATTATCATCATACTTTCAAGCCCCCAGAATCCATCCTGCAAATCTGTTGCAAGTAGGAAGATATTGCAGAAACTTCGTAGTCATAGTCTTCTCATTCTGAGTTATTCTAAAATTTTGTTTCATATATTGATTTTCTGCTTAGAAGCCAATTACTCTAAAAGTTTTTCTTTTTGCCATATATTATGTAAAGGTGGGTTAACTCATCAGCCAGAACTTGGAGCAGGTTGTTAATTTTCCTCCAGAAACCAACCTTGGATGCCTATAATGGGTTAGTTACTCCATTGACATGTGTAGGCAGAATAAAATGAGGGCCATTGCGCCGAGTTATGAAGCACAATGGTTGCACCGTCGTTGGGAATCAACGACTATTAAGGAATATTTTAATTCAAATTTCCTCCAGGCATTGTTGAAAAATATTTTTCATAATTTCTCTCCAAATAGCTTCATTGTAATCATGGAGTGAAATTTCATAAACATCCCATGATTTAGAACCTATTATTTGTTTGTTCTTCTCTGAAGTATGCGGCTAACTAGCCATGTGAAAAAACTTGGGTGCAGC

mRNA sequence

ATGCTATCTGAATCTAATCTTCAATTTCAAATTTCCCCTTTTACCTTTGCCGATTTCGCTCCCCTTCGTCTCGATCTTCTTATCTCCTTCACCACACCGCTTGCAACTTTGTTCCCTCACCGTCGATCTCCCCACGGCGGCTTTCTCATTCCACTCCATCGACCTCCCTCCGTCTCTCTTCGTCTACCTCATTGTCTTTCTCTGTTTAATCTCAGATCAGTGGCAGTGAGTCCAAACTCCAAACGCAAGTCTTCACTCTTCTCAGGCTCTGCTACTTCTTCGTTCTGTTGCGAAATGAGAACCGTTCAGGTTGCTTTGCGAACCCTTGGCGGTGGCCTATCGCGGAGATTAAAGCAACCTTCTGTGCTCAGAAACCTTTCCACAAACGCCGCTCGTGATAGTGTCTTTGATGGTGATAAGGGAAAACCTGATTCATTTGAGTCTGCTGATGACTTCGAACGTCGGATATTTGGGGGTGTTTCTTTGGGCGGTTCCGGAAATGATGCTTTCTTTGAGAAGCTTGATAGACTTGGCAAACCTCGTGAAAGAATAGGCTCGAGACTGAGTGGAGGAAACAATTTTCATACGTTGGATGGTCTTCAAGATAATATTAACACGCTGTCAGATGGGATGGATGGCAAGTTGAAGAAAGCTTCCACTTATTTTGAGTTTGATCCCGAGGAAATAGAAAAACCTGATTATGCTTTCAGAGCAGATATTAATTTAGAATGTATACAGGATCTGGATCTAACAAAGCCAGGTGTACGTAAGCCCCCCAAATGGGAAGAGTTTCAGGTGACAACGGAGGAGGCCTTACGAAAAGCTGATTTCAGGTTAATCAATTTACGAGTTTCTGATCTGGACAGTGCGTGGTTGTATTTTTCAATCAAGAAAAATGTTAGGTTTCTGGCGAACTTTATAACTGAGGCCGGGATCATGAAGAAGAGGAGTATGACAGGTATTAGTGCCAAGGCACAGAGGAAAGTCGCACGCGAGATCAAAACTGCACGAGCATTTGGCTTAATGCCCTTCACAACAATGGGAACGAAATCATTTATTTTTGGCAAAACCATGGAGAATCTTGATAGCGACTATGAGTACGAAGTTTTTGACAATAATGCTGATGCAGATGGAGGACGCCCACTCAGATCCCAAAGACCACGCTTTTAGATGGTTGTGAATGTGAATTATTTCCCTCACCCTTATTATCTTTCTTCGAAGATAGTATGCATCTGCTGCCATTTGATCCAACCATTAGCTTAAGTATTACAGGGCTGAGCTTTGTTTGATTGCTTATTATCATCATACTTTCAAGCCCCCAGAATCCATCCTGCAAATCTGTTGCAAGTAGGAAGATATTGCAGAAACTTCGTAGTCATAGTCTTCTCATTCTGAGTTATTCTAAAATTTTGTTTCATATATTGATTTTCTGCTTAGAAGCCAATTACTCTAAAAGTTTTTCTTTTTGCCATATATTATGTAAAGGTGGGTTAACTCATCAGCCAGAACTTGGAGCAGGTTGTTAATTTTCCTCCAGAAACCAACCTTGGATGCCTATAATGGGTTAGTTACTCCATTGACATGTGTAGGCAGAATAAAATGAGGGCCATTGCGCCGAGTTATGAAGCACAATGGTTGCACCGTCGTTGGGAATCAACGACTATTAAGGAATATTTTAATTCAAATTTCCTCCAGGCATTGTTGAAAAATATTTTTCATAATTTCTCTCCAAATAGCTTCATTGTAATCATGGAGTGAAATTTCATAAACATCCCATGATTTAGAACCTATTATTTGTTTGTTCTTCTCTGAAGTATGCGGCTAACTAGCCATGTGAAAAAACTTGGGTGCAGC

Coding sequence (CDS)

ATGCTATCTGAATCTAATCTTCAATTTCAAATTTCCCCTTTTACCTTTGCCGATTTCGCTCCCCTTCGTCTCGATCTTCTTATCTCCTTCACCACACCGCTTGCAACTTTGTTCCCTCACCGTCGATCTCCCCACGGCGGCTTTCTCATTCCACTCCATCGACCTCCCTCCGTCTCTCTTCGTCTACCTCATTGTCTTTCTCTGTTTAATCTCAGATCAGTGGCAGTGAGTCCAAACTCCAAACGCAAGTCTTCACTCTTCTCAGGCTCTGCTACTTCTTCGTTCTGTTGCGAAATGAGAACCGTTCAGGTTGCTTTGCGAACCCTTGGCGGTGGCCTATCGCGGAGATTAAAGCAACCTTCTGTGCTCAGAAACCTTTCCACAAACGCCGCTCGTGATAGTGTCTTTGATGGTGATAAGGGAAAACCTGATTCATTTGAGTCTGCTGATGACTTCGAACGTCGGATATTTGGGGGTGTTTCTTTGGGCGGTTCCGGAAATGATGCTTTCTTTGAGAAGCTTGATAGACTTGGCAAACCTCGTGAAAGAATAGGCTCGAGACTGAGTGGAGGAAACAATTTTCATACGTTGGATGGTCTTCAAGATAATATTAACACGCTGTCAGATGGGATGGATGGCAAGTTGAAGAAAGCTTCCACTTATTTTGAGTTTGATCCCGAGGAAATAGAAAAACCTGATTATGCTTTCAGAGCAGATATTAATTTAGAATGTATACAGGATCTGGATCTAACAAAGCCAGGTGTACGTAAGCCCCCCAAATGGGAAGAGTTTCAGGTGACAACGGAGGAGGCCTTACGAAAAGCTGATTTCAGGTTAATCAATTTACGAGTTTCTGATCTGGACAGTGCGTGGTTGTATTTTTCAATCAAGAAAAATGTTAGGTTTCTGGCGAACTTTATAACTGAGGCCGGGATCATGAAGAAGAGGAGTATGACAGGTATTAGTGCCAAGGCACAGAGGAAAGTCGCACGCGAGATCAAAACTGCACGAGCATTTGGCTTAATGCCCTTCACAACAATGGGAACGAAATCATTTATTTTTGGCAAAACCATGGAGAATCTTGATAGCGACTATGAGTACGAAGTTTTTGACAATAATGCTGATGCAGATGGAGGACGCCCACTCAGATCCCAAAGACCACGCTTTTAG

Protein sequence

MLSESNLQFQISPFTFADFAPLRLDLLISFTTPLATLFPHRRSPHGGFLIPLHRPPSVSLRLPHCLSLFNLRSVAVSPNSKRKSSLFSGSATSSFCCEMRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFGGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLDGLQDNINTLSDGMDGKLKKASTYFEFDPEEIEKPDYAFRADINLECIQDLDLTKPGVRKPPKWEEFQVTTEEALRKADFRLINLRVSDLDSAWLYFSIKKNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDNNADADGGRPLRSQRPRF

Homology

[Close]

BLAST of Lsi10G014370 vs. ExPASy Swiss-Prot
Match: Q1GC35 (30S ribosomal protein S18 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081 / BCRC 10696 / JCM 1002 / NBRC 13953 / NCIMB 11778 / NCTC 12712 / WDCM 00102 / Lb 14) OX=390333 GN=rpsR PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 8.8e-05
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 298 KNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPF 345
           K+V  L +FI+E G +  RS+TG SAK QRKVA  IK AR  GL+PF
Sbjct: 28  KDVDLLKHFISERGKILPRSVTGTSAKNQRKVANAIKRARIMGLLPF 74

[Close]

BLAST of Lsi10G014370 vs. ExPASy Swiss-Prot
Match: O66476 (30S ribosomal protein S18 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rpsR PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.0e-04
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 298 KNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPF 345
           KN   L NF+TE G +K R  TG+ AK QR++A +IK AR  GL+P+
Sbjct: 23  KNYEELRNFLTERGRIKDRKQTGLCAKHQRRLAVQIKRARQLGLLPY 69

[Close]

BLAST of Lsi10G014370 vs. ExPASy Swiss-Prot
Match: Q04CW7 (30S ribosomal protein S18 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365 / Lb-18) OX=321956 GN=rpsR PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 3.3e-04
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 298 KNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPF 345
           K+V  L +FI+E G +  R +TG SAK QRKVA  IK AR  GL+PF
Sbjct: 28  KDVDLLKHFISERGKILPRRVTGTSAKNQRKVANAIKRARIMGLLPF 74

[Close]

BLAST of Lsi10G014370 vs. ExPASy Swiss-Prot
Match: Q5FN07 (30S ribosomal protein S18 OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) OX=272621 GN=rpsR PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 4.4e-04
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 298 KNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPF 345
           K+V  L  FI+E G +  R +TG SAK QRKVA  IK AR  GL+PF
Sbjct: 28  KDVDLLKRFISERGKILPRRVTGTSAKNQRKVANAIKRARIMGLLPF 74

[Close]

BLAST of Lsi10G014370 vs. ExPASy Swiss-Prot
Match: A8YW49 (30S ribosomal protein S18 OS=Lactobacillus helveticus (strain DPC 4571) OX=405566 GN=rpsR PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 4.4e-04
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 298 KNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKTARAFGLMPF 345
           K+V  L  FI+E G +  R +TG SAK QRKVA  IK AR  GL+PF
Sbjct: 27  KDVDLLKRFISERGKILPRRVTGTSAKNQRKVANAIKRARIMGLLPF 73

[Close]

BLAST of Lsi10G014370 vs. ExPASy TrEMBL
Match: A0A6J1JHF0 (uncharacterized protein LOC111484513 OS=Cucurbita maxima OX=3661 GN=LOC111484513 PE=4 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 1.2e-113
Identity = 229/291 (78.69%), Postives = 238/291 (81.79%), Query Frame = 0


Query: 99  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFG 158
           M TVQVALRTLGGGLSRR KQPSVLRNLSTNAARDS FD DKGKPDSFESADDFERRIFG
Sbjct: 1   MSTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFD-DKGKPDSFESADDFERRIFG 60

Query: 159 GVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLDGLQDNINTLSDGMDGKLKKA 218
           GVS G SGNDAFFEKLDRLGKPRERIGSRLSGGNNF  L GL DN+NTLSDGMDGKLKKA
Sbjct: 61  GVSAGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGLDDNLNTLSDGMDGKLKKA 120

Query: 219 STYFEFDPEEIEKPDYAFRADINLEC-----IQDLDLTKPGVRKPPKWEEFQVTTEEALR 278
           STYFEFD EEI K DY FRAD++ +      I+DLDLTKPGVRKPPK  EFQVTTEE LR
Sbjct: 121 STYFEFDTEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLR 180

Query: 279 KADFRLINLRVSDLDSAWLYFSIKKNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREI 338
           KADFR                    NVRFLANFIT+AGI+ KRS T ISAKAQRKVAREI
Sbjct: 181 KADFR--------------------NVRFLANFITDAGIIIKRSKTRISAKAQRKVAREI 240

Query: 339 KTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDNNADADGGRPLRS 385
           KTARAFGLMPFTTMGTKSF+FGKTME+LD DYEYEVFDNN   DGG PL S
Sbjct: 241 KTARAFGLMPFTTMGTKSFVFGKTMEDLDKDYEYEVFDNN---DGGHPLGS 267

[Close]

BLAST of Lsi10G014370 vs. ExPASy TrEMBL
Match: A0A6J1FYC1 (uncharacterized protein LOC111448465 OS=Cucurbita moschata OX=3662 GN=LOC111448465 PE=4 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 3.5e-113
Identity = 227/291 (78.01%), Postives = 239/291 (82.13%), Query Frame = 0


Query: 99  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFG 158
           MRTVQVALRTLGGGLSRR KQPSVLRNLSTNAARDS FD DKGKPDSFESADDFERRIFG
Sbjct: 1   MRTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFD-DKGKPDSFESADDFERRIFG 60

Query: 159 GVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLDGLQDNINTLSDGMDGKLKKA 218
           GVS G SGNDAFFEKLDR+GKPRERIGSRLSGGNNF +L GL DN+NTLSDGMDGKLKKA
Sbjct: 61  GVSTGDSGNDAFFEKLDRIGKPRERIGSRLSGGNNFQSLYGLDDNLNTLSDGMDGKLKKA 120

Query: 219 STYFEFDPEEIEKPDYAFRADINLEC-----IQDLDLTKPGVRKPPKWEEFQVTTEEALR 278
           STYFEFD EEI K DY FRAD++ +      ++DLDLTKPGVRKPPK  EFQVTTEE LR
Sbjct: 121 STYFEFDTEEIAKDDYTFRADMSFKPGSTYEVKDLDLTKPGVRKPPKRVEFQVTTEEVLR 180

Query: 279 KADFRLINLRVSDLDSAWLYFSIKKNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREI 338
           KADFR                    NVRFLANFIT+AGI+ KRS T ISAKAQRKVAREI
Sbjct: 181 KADFR--------------------NVRFLANFITDAGIIIKRSKTRISAKAQRKVAREI 240

Query: 339 KTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDNNADADGGRPLRS 385
           KTARAFGLMPFTTMGTKSF+FGKTME+LD DYEYEVFDNN   DG  PL S
Sbjct: 241 KTARAFGLMPFTTMGTKSFVFGKTMEDLDKDYEYEVFDNN---DGEHPLGS 267

[Close]

BLAST of Lsi10G014370 vs. ExPASy TrEMBL
Match: A0A5A7V7I3 (Putative Ribosomal protein S18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00800 PE=3 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 5.9e-113
Identity = 226/293 (77.13%), Postives = 241/293 (82.25%), Query Frame = 0


Query: 99  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGD-KGKPDSFESADDFERRIF 158
           MRTVQVALRTLGGGLSR LKQPSVLRNLSTNAAR S FD D KG PDSFE+ADDFERRIF
Sbjct: 1   MRTVQVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKGNPDSFETADDFERRIF 60

Query: 159 GGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLDGLQDNINTLSDGMDGKLKK 218
           GGVS+ GSGNDAFFEK DRLGKPRERIGS+LSGGNNF  L  L+DN +TLSDGMDGKLKK
Sbjct: 61  GGVSMAGSGNDAFFEKFDRLGKPRERIGSKLSGGNNFQALRDLEDNFDTLSDGMDGKLKK 120

Query: 219 ASTYFEFDPEEIEKPDYAFRADINLE-----CIQDLDLTKPGVRKPPKWEEFQVTTEEAL 278
           ASTYFE DP+EIEK DYAFRAD++        ++DLDLT+PGVRKPPK   FQVTTEEAL
Sbjct: 121 ASTYFEVDPDEIEKDDYAFRADMSFRPGSTYTVKDLDLTRPGVRKPPKRVGFQVTTEEAL 180

Query: 279 RKADFRLINLRVSDLDSAWLYFSIKKNVRFLANFITEAGIMKKRSMTGISAKAQRKVARE 338
           RKADFR                    NVRFLANFITEAGI+ KRS T ISAKAQRKVARE
Sbjct: 181 RKADFR--------------------NVRFLANFITEAGIINKRSNTRISAKAQRKVARE 240

Query: 339 IKTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDN-NADADGGRPLRS 385
           IKTARAFGLMPFTTMGTKSFIFGK+MENLD+D+EYEVFDN N DADGGR LRS
Sbjct: 241 IKTARAFGLMPFTTMGTKSFIFGKSMENLDTDFEYEVFDNDNTDADGGRMLRS 273

[Close]

BLAST of Lsi10G014370 vs. ExPASy TrEMBL
Match: A0A1S3CM21 (uncharacterized protein LOC103502018 OS=Cucumis melo OX=3656 GN=LOC103502018 PE=3 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 5.9e-113
Identity = 226/293 (77.13%), Postives = 241/293 (82.25%), Query Frame = 0


Query: 99  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGD-KGKPDSFESADDFERRIF 158
           MRTVQVALRTLGGGLSR LKQPSVLRNLSTNAAR S FD D KG PDSFE+ADDFERRIF
Sbjct: 1   MRTVQVALRTLGGGLSRGLKQPSVLRNLSTNAARGSGFDDDNKGNPDSFETADDFERRIF 60

Query: 159 GGVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLDGLQDNINTLSDGMDGKLKK 218
           GGVS+ GSGNDAFFEK DRLGKPRERIGS+LSGGNNF  L  L+DN +TLSDGMDGKLKK
Sbjct: 61  GGVSMAGSGNDAFFEKFDRLGKPRERIGSKLSGGNNFQALRDLEDNFDTLSDGMDGKLKK 120

Query: 219 ASTYFEFDPEEIEKPDYAFRADINLE-----CIQDLDLTKPGVRKPPKWEEFQVTTEEAL 278
           ASTYFE DP+EIEK DYAFRAD++        ++DLDLT+PGVRKPPK   FQVTTEEAL
Sbjct: 121 ASTYFEVDPDEIEKDDYAFRADMSFRPGSTYTVKDLDLTRPGVRKPPKRVGFQVTTEEAL 180

Query: 279 RKADFRLINLRVSDLDSAWLYFSIKKNVRFLANFITEAGIMKKRSMTGISAKAQRKVARE 338
           RKADFR                    NVRFLANFITEAGI+ KRS T ISAKAQRKVARE
Sbjct: 181 RKADFR--------------------NVRFLANFITEAGIINKRSNTRISAKAQRKVARE 240

Query: 339 IKTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDN-NADADGGRPLRS 385
           IKTARAFGLMPFTTMGTKSFIFGK+MENLD+D+EYEVFDN N DADGGR LRS
Sbjct: 241 IKTARAFGLMPFTTMGTKSFIFGKSMENLDTDFEYEVFDNDNTDADGGRMLRS 273

[Close]

BLAST of Lsi10G014370 vs. ExPASy TrEMBL
Match: A0A6J1G586 (uncharacterized protein LOC111451027 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451027 PE=3 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 7.8e-113
Identity = 220/288 (76.39%), Postives = 237/288 (82.29%), Query Frame = 0


Query: 99  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFG 158
           MR VQVA RT+GGG++R+ KQPS LRNLSTNAARD  FD D+GK +SFESADDFERRIFG
Sbjct: 1   MRNVQVAFRTIGGGITRKFKQPSALRNLSTNAARDCSFD-DEGKSNSFESADDFERRIFG 60

Query: 159 GVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLDGLQDNINTLSDGMDGKLKKA 218
           GVSLG SGNDAFFEKLDRLGKPRERIGSRLSGGNNF  L G++DN+NTLSDGMDGKLKKA
Sbjct: 61  GVSLGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGIEDNLNTLSDGMDGKLKKA 120

Query: 219 STYFEFDPEEIEKPDYAFRADINLEC-----IQDLDLTKPGVRKPPKWEEFQVTTEEALR 278
           STYFEFDPEEI K DY FRAD++ +      I+DLDLTKPGVRKPPK  EFQVTTEE LR
Sbjct: 121 STYFEFDPEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLR 180

Query: 279 KADFRLINLRVSDLDSAWLYFSIKKNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREI 338
           KADFR                    NVRFLANFIT+AGI+ KRS TGISAKAQRKVAREI
Sbjct: 181 KADFR--------------------NVRFLANFITDAGIINKRSKTGISAKAQRKVAREI 240

Query: 339 KTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDNNADADGGRP 382
           KTARAFGLMPFTTMGTKSF+FGKTME LD DYEYEVF+NN DAD GRP
Sbjct: 241 KTARAFGLMPFTTMGTKSFVFGKTMEYLDKDYEYEVFENNTDADRGRP 267

[Close]

BLAST of Lsi10G014370 vs. NCBI nr
Match: XP_038901583.1 (uncharacterized protein LOC120088393 [Benincasa hispida])

HSP 1 Score: 424.1 bits (1089), Expect = 1.3e-114
Identity = 224/290 (77.24%), Postives = 242/290 (83.45%), Query Frame = 0


Query: 99  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFG 158
           MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDS FD DKGKPDSFES DDFE RIFG
Sbjct: 1   MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSGFDNDKGKPDSFESIDDFEHRIFG 60

Query: 159 GVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLDGLQDNINTLSDGMDGKLKKA 218
           GVS+G SGNDAFFEKLDRLGKPRERIGSR SGGNNFH L GL+D++ TLSDGMDGKLKKA
Sbjct: 61  GVSMGDSGNDAFFEKLDRLGKPRERIGSRPSGGNNFHALHGLEDDLTTLSDGMDGKLKKA 120

Query: 219 STYFEFDPEEIEKPDYAFRADINLEC-----IQDLDLTKPGVRKPPKWEEFQVTTEEALR 278
           STYFE+DPEEI + +Y FRAD++ +      I+DLDLTKPGVRKP K  EFQVTTEEALR
Sbjct: 121 STYFEYDPEEIAQDNYTFRADMSFKPGSTYEIKDLDLTKPGVRKPSKRVEFQVTTEEALR 180

Query: 279 KADFRLINLRVSDLDSAWLYFSIKKNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREI 338
           KADFR                    NVRFLANFITEAGI+ KRS T ISAKAQRKVAREI
Sbjct: 181 KADFR--------------------NVRFLANFITEAGIIHKRSKTRISAKAQRKVAREI 240

Query: 339 KTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDNNADADGGRPLR 384
           KTARAFGLMPFTTMGTKSF+FGK+MENLD+D+ YEV D+N DADGGRPL+
Sbjct: 241 KTARAFGLMPFTTMGTKSFLFGKSMENLDTDFAYEVPDDNTDADGGRPLK 270

[Close]

BLAST of Lsi10G014370 vs. NCBI nr
Match: KAG7010502.1 (rpsR [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 420.2 bits (1079), Expect = 1.9e-113
Identity = 227/289 (78.55%), Postives = 239/289 (82.70%), Query Frame = 0


Query: 99  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFG 158
           MRTVQVALRTLGGGLSRR KQPSVLRNLSTNAARDS FD DKGKPDSFESADDFERRIFG
Sbjct: 1   MRTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFD-DKGKPDSFESADDFERRIFG 60

Query: 159 GVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLDGLQDNINTLSDGMDGKLKKA 218
           GVS G SGNDAFFEKLDR+GKPRERIGSRLSGGNNF +L GL DN+NTLSDGMDGKLKKA
Sbjct: 61  GVSTGDSGNDAFFEKLDRIGKPRERIGSRLSGGNNFQSLYGLDDNLNTLSDGMDGKLKKA 120

Query: 219 STYFEFDPEEIEKPDYAFRADINLE---CIQDLDLTKPGVRKPPKWEEFQVTTEEALRKA 278
           STYFEFD EEI K DY FRAD++ +     +DLDLTKPGVRKPPK  EFQVTTEE LRKA
Sbjct: 121 STYFEFDTEEIAKDDYTFRADMSFKPGSTYEDLDLTKPGVRKPPKRVEFQVTTEEVLRKA 180

Query: 279 DFRLINLRVSDLDSAWLYFSIKKNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREIKT 338
           DFR                    NVRFLANFIT+AGI+ KRS T ISAKAQRKVAREIKT
Sbjct: 181 DFR--------------------NVRFLANFITDAGIIIKRSKTRISAKAQRKVAREIKT 240

Query: 339 ARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDNNADADGGRPLRS 385
           ARAFGLMPFTTMGTKSF+FGKTME+LD DYEYE+FDNN   DG RPL S
Sbjct: 241 ARAFGLMPFTTMGTKSFVFGKTMEDLDKDYEYEIFDNN---DGERPLGS 265

[Close]

BLAST of Lsi10G014370 vs. NCBI nr
Match: XP_022986919.1 (uncharacterized protein LOC111484513 [Cucurbita maxima])

HSP 1 Score: 419.9 bits (1078), Expect = 2.5e-113
Identity = 229/291 (78.69%), Postives = 238/291 (81.79%), Query Frame = 0


Query: 99  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFG 158
           M TVQVALRTLGGGLSRR KQPSVLRNLSTNAARDS FD DKGKPDSFESADDFERRIFG
Sbjct: 1   MSTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFD-DKGKPDSFESADDFERRIFG 60

Query: 159 GVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLDGLQDNINTLSDGMDGKLKKA 218
           GVS G SGNDAFFEKLDRLGKPRERIGSRLSGGNNF  L GL DN+NTLSDGMDGKLKKA
Sbjct: 61  GVSAGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQALYGLDDNLNTLSDGMDGKLKKA 120

Query: 219 STYFEFDPEEIEKPDYAFRADINLEC-----IQDLDLTKPGVRKPPKWEEFQVTTEEALR 278
           STYFEFD EEI K DY FRAD++ +      I+DLDLTKPGVRKPPK  EFQVTTEE LR
Sbjct: 121 STYFEFDTEEIAKDDYTFRADMSFKPGSTYEIKDLDLTKPGVRKPPKRVEFQVTTEEVLR 180

Query: 279 KADFRLINLRVSDLDSAWLYFSIKKNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREI 338
           KADFR                    NVRFLANFIT+AGI+ KRS T ISAKAQRKVAREI
Sbjct: 181 KADFR--------------------NVRFLANFITDAGIIIKRSKTRISAKAQRKVAREI 240

Query: 339 KTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDNNADADGGRPLRS 385
           KTARAFGLMPFTTMGTKSF+FGKTME+LD DYEYEVFDNN   DGG PL S
Sbjct: 241 KTARAFGLMPFTTMGTKSFVFGKTMEDLDKDYEYEVFDNN---DGGHPLGS 267

[Close]

BLAST of Lsi10G014370 vs. NCBI nr
Match: XP_022943865.1 (uncharacterized protein LOC111448465 [Cucurbita moschata])

HSP 1 Score: 418.3 bits (1074), Expect = 7.2e-113
Identity = 227/291 (78.01%), Postives = 239/291 (82.13%), Query Frame = 0


Query: 99  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFG 158
           MRTVQVALRTLGGGLSRR KQPSVLRNLSTNAARDS FD DKGKPDSFESADDFERRIFG
Sbjct: 1   MRTVQVALRTLGGGLSRRFKQPSVLRNLSTNAARDSGFD-DKGKPDSFESADDFERRIFG 60

Query: 159 GVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLDGLQDNINTLSDGMDGKLKKA 218
           GVS G SGNDAFFEKLDR+GKPRERIGSRLSGGNNF +L GL DN+NTLSDGMDGKLKKA
Sbjct: 61  GVSTGDSGNDAFFEKLDRIGKPRERIGSRLSGGNNFQSLYGLDDNLNTLSDGMDGKLKKA 120

Query: 219 STYFEFDPEEIEKPDYAFRADINLEC-----IQDLDLTKPGVRKPPKWEEFQVTTEEALR 278
           STYFEFD EEI K DY FRAD++ +      ++DLDLTKPGVRKPPK  EFQVTTEE LR
Sbjct: 121 STYFEFDTEEIAKDDYTFRADMSFKPGSTYEVKDLDLTKPGVRKPPKRVEFQVTTEEVLR 180

Query: 279 KADFRLINLRVSDLDSAWLYFSIKKNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREI 338
           KADFR                    NVRFLANFIT+AGI+ KRS T ISAKAQRKVAREI
Sbjct: 181 KADFR--------------------NVRFLANFITDAGIIIKRSKTRISAKAQRKVAREI 240

Query: 339 KTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDNNADADGGRPLRS 385
           KTARAFGLMPFTTMGTKSF+FGKTME+LD DYEYEVFDNN   DG  PL S
Sbjct: 241 KTARAFGLMPFTTMGTKSFVFGKTMEDLDKDYEYEVFDNN---DGEHPLGS 267

[Close]

BLAST of Lsi10G014370 vs. NCBI nr
Match: XP_023512473.1 (uncharacterized protein LOC111777218 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 418.3 bits (1074), Expect = 7.2e-113
Identity = 228/291 (78.35%), Postives = 239/291 (82.13%), Query Frame = 0


Query: 99  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFG 158
           MRTVQVALRTLG GLSRR KQPSVLRNLSTNAARDS FD DKGKPDSFESADDFERRIFG
Sbjct: 1   MRTVQVALRTLGRGLSRRFKQPSVLRNLSTNAARDSGFD-DKGKPDSFESADDFERRIFG 60

Query: 159 GVSLGGSGNDAFFEKLDRLGKPRERIGSRLSGGNNFHTLDGLQDNINTLSDGMDGKLKKA 218
           GVS G SGNDAFFEKLDRLGKPRERIGSRLSGGNNF +L GL DN+NTLSDGMDGKLKKA
Sbjct: 61  GVSTGDSGNDAFFEKLDRLGKPRERIGSRLSGGNNFQSLYGLDDNLNTLSDGMDGKLKKA 120

Query: 219 STYFEFDPEEIEKPDYAFRADINLEC-----IQDLDLTKPGVRKPPKWEEFQVTTEEALR 278
           STYFEFD EEI K DY FRAD++ +      ++DLDLTKPGVRKPPK  EFQVTTEE LR
Sbjct: 121 STYFEFDTEEIAKDDYTFRADMSFKPGSTYEVKDLDLTKPGVRKPPKRVEFQVTTEEVLR 180

Query: 279 KADFRLINLRVSDLDSAWLYFSIKKNVRFLANFITEAGIMKKRSMTGISAKAQRKVAREI 338
           KADFR                    NVRFLANFIT+AGI+ KRS T ISAKAQRKVAREI
Sbjct: 181 KADFR--------------------NVRFLANFITDAGIIIKRSKTRISAKAQRKVAREI 240

Query: 339 KTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDNNADADGGRPLRS 385
           KTARAFGLMPFTTMGTKSF+FGKTME+LD DYEYEVFDNN   DGG PL S
Sbjct: 241 KTARAFGLMPFTTMGTKSFVFGKTMEDLDKDYEYEVFDNN---DGGYPLGS 267

[Close]

BLAST of Lsi10G014370 vs. TAIR 10
Match: AT1G07210.1 (Ribosomal protein S18 )

HSP 1 Score: 172.9 bits (437), Expect = 4.9e-43
Identity = 120/290 (41.38%), Postives = 161/290 (55.52%), Query Frame = 0


Query: 99  MRTVQVALRTLGGGLSRRLKQPSVLRNLSTNAARDSVFDGDKGKPDSFESADDFERRIFG 158
           M   + A R+L      R  +P V R+L+TNA  D           SF+S+D+ +  +FG
Sbjct: 1   MSIARFATRSLNNVTFLRPFRPIVSRSLATNANED-----PNQNRSSFDSSDNLD-SLFG 60

Query: 159 GVSLGGSGNDAFFEKLDRLGKPRERI-------GSRLSGGNNFHTLDGLQDNINTLSDGM 218
             +     ++ FF+ L +  K +          GSR SGG +        +  +  SDG+
Sbjct: 61  DYTGNDEKSNDFFQHLSKAEKDKRDFNGYNRSGGSRYSGGGSM----SKDETFDPSSDGV 120

Query: 219 DGKLKKASTYFEFDPEEIEKPDYAFRADINLEC-IQDLDLTKPGVRKP-PKWEEFQVTTE 278
           DGKLK+A+  +  D  +  K +Y+FR D N    + +    +  ++ P     + +VTTE
Sbjct: 121 DGKLKEAALAYNMDEGDGFK-EYSFRPDFNNSWGMNNFPRMQKQMQNPRQNNSKSEVTTE 180

Query: 279 EALRKADFRLINLRVSDLDSAWLYFSIKKNVRFLANFITEAGIMKKRSMTGISAKAQRKV 338
           E L+ ADFR                    NVRFLANFITEAGI+ KR  TGISAKAQRK+
Sbjct: 181 EVLKNADFR--------------------NVRFLANFITEAGIIIKRKQTGISAKAQRKI 240

Query: 339 AREIKTARAFGLMPFTTMGTKSFIFGKTMENLDSDYEYEVFDNNADADGG 380
           AREIKTARAFGLMPFTTMGTK+F FGKTMEN D D+EYEV D++ + D G
Sbjct: 241 AREIKTARAFGLMPFTTMGTKAFQFGKTMENRDQDFEYEVLDDDDEFDEG 259

The following BLAST results are available for this feature:

BLAST of Lsi10G014370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1GC35	8.8e-05	57.45	30S ribosomal protein S18 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain...	[more]
O66476	2.0e-04	51.06	30S ribosomal protein S18 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rpsR PE=...	[more]
Q04CW7	3.3e-04	55.32	30S ribosomal protein S18 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain...	[more]
Q5FN07	4.4e-04	55.32	30S ribosomal protein S18 OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK...	[more]
A8YW49	4.4e-04	55.32	30S ribosomal protein S18 OS=Lactobacillus helveticus (strain DPC 4571) OX=40556...	[more]

BLAST of Lsi10G014370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JHF0	1.2e-113	78.69	uncharacterized protein LOC111484513 OS=Cucurbita maxima OX=3661 GN=LOC111484513...	[more]
A0A6J1FYC1	3.5e-113	78.01	uncharacterized protein LOC111448465 OS=Cucurbita moschata OX=3662 GN=LOC1114484...	[more]
A0A5A7V7I3	5.9e-113	77.13	Putative Ribosomal protein S18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3CM21	5.9e-113	77.13	uncharacterized protein LOC103502018 OS=Cucumis melo OX=3656 GN=LOC103502018 PE=...	[more]
A0A6J1G586	7.8e-113	76.39	uncharacterized protein LOC111451027 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Lsi10G014370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901583.1	1.3e-114	77.24	uncharacterized protein LOC120088393 [Benincasa hispida]	[more]
KAG7010502.1	1.9e-113	78.55	rpsR [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022986919.1	2.5e-113	78.69	uncharacterized protein LOC111484513 [Cucurbita maxima]	[more]
XP_022943865.1	7.2e-113	78.01	uncharacterized protein LOC111448465 [Cucurbita moschata]	[more]
XP_023512473.1	7.2e-113	78.35	uncharacterized protein LOC111777218 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi10G014370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07210.1	4.9e-43	41.38	Ribosomal protein S18	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001648	Ribosomal protein S18	PRINTS	PR00974	RIBOSOMALS18	coord: 302..312 score: 39.67 coord: 320..334 score: 42.42 coord: 334..344 score: 52.07
IPR001648	Ribosomal protein S18	PFAM	PF01084	Ribosomal_S18	coord: 298..342 e-value: 9.2E-15 score: 54.6
IPR001648	Ribosomal protein S18	PANTHER	PTHR13479	30S RIBOSOMAL PROTEIN S18	coord: 88..377
IPR036870	Ribosomal protein S18 superfamily	GENE3D	4.10.640.10	Ribosomal protein S18	coord: 298..347 e-value: 7.8E-18 score: 66.1
IPR036870	Ribosomal protein S18 superfamily	SUPERFAMILY	46911	Ribosomal protein S18	coord: 298..345
None	No IPR available	PANTHER	PTHR13479:SF40	28S RIBOSOMAL PROTEIN S18C, MITOCHONDRIAL	coord: 88..377

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G014370.1	Lsi10G014370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome