Lsi10G014270 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G014270
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	zinc finger CCCH domain-containing protein 25
Location	chr10: 18358591 .. 18363355 (-)
RNA-Seq Expression	Lsi10G014270
Synteny	Lsi10G014270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTACGACCGGGCGTGAGAGGCACTCGGTCCTTCGAATTTTCAAGGGCCGCGGGGGGCTCACCGGACACCACACGACGTGCGGTGCTCTTCCAGCCACTGGACCCTACCTCCGGTTGAGCCATTTCCAGGTGGGCAGGCTGTTAAACAAAAAAGATAACTCTTCCCGAGGCCCCCGCGCGATGTCTCTAGAATCCTTGACGTTGTCGCCAGCCGCCACGTCCCCGTTCAGGAATTTTAACCTGATTCCCTTTCGAAGTTCGCCCTATCAGACAGGCTTCCCTCGTCTCTTAGGATCAACTAACCCATGTGCAAGTGCCGTTCATATGGAACCTTTACCCTCTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCATCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGATTTAGGTTAGCGCGCAGTTAGGCACCGTAACTCGACTTCCGGTTCATCCCGCCTTGCAAGTTCGCCTTTATATTATAGTCTTGTGGGACAATAAATTTTTTTAATATTTGTAAATAATTAAAAAAAAAAAATTAAGTCTAAAAAACCTTCATTTTCGTTTCCCCAAATTTACAGAAAAAAAGAAATAAACCCTAGGGCTAATCGTCTTCTTCTTCTGCACCTCGTTCTATTTCTCTCTCGTTCTCCTCTCCCATCGACCACAGATCGGTCACCCACCCAGGTTTCTAGCCTCTCCCTCACTCCCGGCGGCGGCCGCACACCGCCACGCCACGCCAACCCTTTCTTGATCTCAACCGTTGCTATTCTTTCTCCTCTCATTTCACACCCCTGTATCAATATTCTTTCTCCTCTCATTTCACTCTCAACTGCAACCTCACTCCGCAAGCTGCTACTTGCATTATGCTTTCATTTCGTTGTCTATCGTCGTGATCAAAGTTTGTTTTCCCCAAGGGAAACAAAGAATTTTGATTTCGAGGTGAGCTATGAATCCTCTAACCCTAGTCAAACGCATCCAGAAAATCAATTCTCAAGAGGCCTCGCTTGGGATTTCTGAGGAAGCTTCATGGCACGCCAAATACAAAGATTCCGCCTACGTTTTTGTTGGAGGCATTCCTTATGATCTCACTGAAGGCGATCTCCTCGCCGTCTTCGCCCAGTAAGTTCATAATTCTATCTATGTTCTCCCCCATCGTCGTTTTGATTGTGTTCTCCTGCGGCTCTCTGTTCTTATTTACTTGATAGATTATGTAGATGGGTTAGTTAAGATTGAGATGTTGTGCTGGATTTGTGTGTTCAACATTGAAATGTTGTGCTCTATATTCTTATGTCATCAAAATTGATTTTGAATGATTAAAAACATGCTCAGAAGTGATTATATAAACGTCAAAAGTAATTTTAACCATTTCAGAATCACTCCCAAACATGCTCGTACCCTTAGCTATTTTGTATTGGTAACTTAAGAGATGGAGTTGATGTTTCAAGTTGTGCAGCTCATGCTTAACTAAAGAGACTAATTGAACTCGTGTTTGCTAGTCCAGTAGATTTTGTTGTTCCTTGTATCGTCAGCTTGGAAAAAAGCTTCTCACTCCTTCTTCTCCTTTTTCTCTAGAGAATCATACACGTTTATTTTTTTTCATTTAGATCCTTTTTAGAATTCATCTTCCTTGGATCTTGAAGGGGGCAACCATATGACAAGGGGTTGGGATGTTTGGAGATACCGCTCGAGGTCTTAGGTTTGAAGTCTCATGTGAAAAACTGAGGCCCTGTTTGGTTTTTTGTTTTTAGTTTGTGAAAATTAAGCCTATAAACATCCATTTCACCTCTAAATTTCTTCATTTGTTATCTATTTTTTACCAATGTTTTAAAAAACTAAACCAAGTTTTTAAAATTTATTTTTGTTTTTGAAATTTGACTAAGAATTCAACTCTTTTACTTAAAAAATATGCAAACCGTAAGAAATTGAGAGGAAATAGGCTTGATTTTCAAAAATAAAAAACCAAAAACCAAATGGTTACTAAAAAGTTCCTACCTACTCAAGACGTTGGTTTTCTTCTCTGGAGCTAGCCTTGGAGTGGGGAAAGCCTCTCAAAGATTAGTGGGGGTAGGTTCTGTGCATAATGCAAGAAGAGCTCTTTGATATCTTGATATGTGTGTGTGTGTATATATATATATGTATAATCACATTCGTTCCAATTAATACAAGAGTATTCTTCTTCCTTGTCACTGTTTAGCTGTCTGCAAATTCATTTTAAGGTTAGATATTAGCTTGTGGATCATTTTCTTTCTGAATATTAAAATGTACTTCAACGTACAGGTATGGAGAGATTGTTGATGTTAATCTTATCAGAGACAAGGGTACAGGAAAATCAAAAGGCTTTGCCTTTGTTGCATATGAAGATCAGAGAAGTACAAATCTTGCTGTAGGTTGTCTTCGTCTCCTCGCTCTAAACTGTTAATCGTTTTATGGGACTAAATGCAGATCTCTAAGTAATAGTATTTGTCTCTTTCAGATAATTTGAATGGAGCACAGATTCTAGGTCGAATCATTAGGGTTGATCATGTGTCTAAATATAAAAAGAAGGAAGAAGAAGATGAAGAAGAAGAACAGAAAAAGAGGGAAGCTCGGGGTGTTTGTCGTGCATTTCAAAGGGGTGAATGTACCCGTGGAGCTGGATGCAAATTCTCCCACGATGAGCAGGTATGTCCGAGACCTCCTATTTTGTGAGTGTGACAGTTTGTTACCGGGGAGGGGGGAAGGTGTGATGTACAGAAAAGGAAGTCTGATGATTTTTGCAGGGGAGATCTGTTTGTTTCATGGGATTCTTGTTTAACTTTTACCTTTAATGTTATTAGCTACCTATACTTGACTAGAAGAAGTTTGAAGACAAATACTTTCTTCGGCATGCTTGGATTAGAGTTTTAGCTTCACTTTAGAAATTTGATGTATGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTCAGAGAGCTGCAAACACGGGCTGGGGGGCGGCAGAAGATGCAAGTTCAAAATGGGGGCATGACAAGTTCGACGATCGAAAAGATCATGACAGAGAATTGCGTGCAAAAGGAAGGAAAAATAGTGATGACTTAGAAAGACATCCAAGGGAAGCTAGTGGGAGGCTGAGGCAGGAGAATAAACTGAAAGGTTGGGATGGTAGTAAAGATTCAGAACTCAAGTCAAGAGAGGACCTTGGGAGAAAAGATGAGAAGAGGTTGAGAAGACATGATCTTGATGGAAATCGTCAACCGAAGTCAGGAGATGATCATTATAATAGGGAAGAGAAGAGATCTAGAAGGAACTTCGATGATAATGGGAAAGAAGAGAAGAGATTGAGAAAACATGATGACGATGATGAGACGAAATTAGAAGACGATGGCTATAAGAAGGAAGAAAATAGATATAGAAGGAACCAAGACAATGAACTCCCTCATCATTCAAGAAGAGACTACAATACGAGGGAAGAAGACAGATTGAAAAGGCATGGCGATGGAGAGTATCAAACAAAGCTGGGGGAAGATGATAAAAGAAGGGAAAAAGATATATCGGTAAGGCATCGCTCAGAATCACATAGGAGGGACAATCCAGATGAGAAGAGAGATTATCGATCCTCTCATGGTAGAGATTCTTCATCACACTCTCATAGAGATAGAAACGAAGACCGTCGTAGATAAAATGAAAGAAGATGCAACAGATCATCGTGGTTGGTCCTGTCATGTTAATTTTCCAGAACAAGTTTTCGACATTATTTTAGAACATATTTTAGTTTTCTGATGGCCTGTTCTATTTCCTTGTATTGTAATAGGCACTTTTTTGGCCCCTTCACTATTTGTTGTACTATCAAAATAGGTAATAACTCTTTGAACTGGAAATCTATTTGAGTAGATAAGTAAAGTTCTTGCTGTGACTTGTGAGTGGTTGTAAAGTATCATATATATCTTTGGCTTAAGAATATGAATAATTTCAGCTTTAAGAATATTCTTGTTTTTGTAATTTTGATATAACCATTCAG

mRNA sequence

ATGAGTACGACCGGGCGTGAGAGGCACTCGGTCCTTCGAATTTTCAAGGGCCGCGGGGGGCTCACCGGACACCACACGACGTGCGGTGCTCTTCCAGCCACTGGACCCTACCTCCGGTTGAGCCATTTCCAGGTGGGCAGGCTGTTAAACAAAAAAGATAACTCTTCCCGAGGCCCCCGCGCGATGTCTCTAGAATCCTTGACGTTGTCGCCAGCCGCCACGTCCCCGTTCAGGAATTTTAACCTGATTCCCTTTCGAAGTTCGCCCTATCAGACAGGCTTCCCTCGTCTCTTAGGATCAACTAACCCATGTGCAAGTGCCGTTCATATGGAACCTTTACCCTCTTCGGGGCTAGTTGATTCGGCAGTCAAACGCATCCAGAAAATCAATTCTCAAGAGGCCTCGCTTGGGATTTCTGAGGAAGCTTCATGGCACGCCAAATACAAAGATTCCGCCTACGTTTTTGTTGGAGGCATTCCTTATGATCTCACTGAAGGCGATCTCCTCGCCGTCTTCGCCCAGTATGGAGAGATTGTTGATGTTAATCTTATCAGAGACAAGGGTACAGGAAAATCAAAAGGCTTTGCCTTTGTTGCATATGAAGATCAGAGAAGTACAAATCTTGCTGTAGATAATTTGAATGGAGCACAGATTCTAGGTCGAATCATTAGGGTTGATCATGTGTCTAAATATAAAAAGAAGGAAGAAGAAGATGAAGAAGAAGAACAGAAAAAGAGGGAAGCTCGGGGTGTTTGTCGTGCATTTCAAAGGGGTGAATGTACCCGTGGAGCTGGATGCAAATTCTCCCACGATGAGCAGAGAGCTGCAAACACGGGCTGGGGGGCGGCAGAAGATGCAAGTTCAAAATGGGGGCATGACAAGTTCGACGATCGAAAAGATCATGACAGAGAATTGCGTGCAAAAGGAAGGAAAAATAGTGATGACTTAGAAAGACATCCAAGGGAAGCTAGTGGGAGGCTGAGGCAGGAGAATAAACTGAAAGGTTGGGATGGTAGTAAAGATTCAGAACTCAAGTCAAGAGAGGACCTTGGGAGAAAAGATGAGAAGAGGTTGAGAAGACATGATCTTGATGGAAATCGTCAACCGAAGTCAGGAGATGATCATTATAATAGGGAAGAGAAGAGATCTAGAAGGAACTTCGATGATAATGGGAAAGAAGAGAAGAGATTGAGAAAACATGATGACGATGATGAGACGAAATTAGAAGACGATGGCTATAAGAAGGAAGAAAATAGATATAGAAGGAACCAAGACAATGAACTCCCTCATCATTCAAGAAGAGACTACAATACGAGGGAAGAAGACAGATTGAAAAGGCATGGCGATGGAGAGTATCAAACAAAGCTGGGGGAAGATGATAAAAGAAGGGAAAAAGATATATCGGTAAGGCATCGCTCAGAATCACATAGGAGGGACAATCCAGATGAGAAGAGAGATTATCGATCCTCTCATGGTAGAGATTCTTCATCACACTCTCATAGAGATAGAAACGAAGACCGTCGTAGATAAAATGAAAGAAGATGCAACAGATCATCGTGGTTGGTCCTGTCATGTTAATTTTCCAGAACAAGTTTTCGACATTATTTTAGAACATATTTTAGTTTTCTGATGGCCTGTTCTATTTCCTTGTATTGTAATAGGCACTTTTTTGGCCCCTTCACTATTTGTTGTACTATCAAAATAGGTAATAACTCTTTGAACTGGAAATCTATTTGAGTAGATAAGTAAAGTTCTTGCTGTGACTTGTGAGTGGTTGTAAAGTATCATATATATCTTTGGCTTAAGAATATGAATAATTTCAGCTTTAAGAATATTCTTGTTTTTGTAATTTTGATATAACCATTCAG

Coding sequence (CDS)

ATGAGTACGACCGGGCGTGAGAGGCACTCGGTCCTTCGAATTTTCAAGGGCCGCGGGGGGCTCACCGGACACCACACGACGTGCGGTGCTCTTCCAGCCACTGGACCCTACCTCCGGTTGAGCCATTTCCAGGTGGGCAGGCTGTTAAACAAAAAAGATAACTCTTCCCGAGGCCCCCGCGCGATGTCTCTAGAATCCTTGACGTTGTCGCCAGCCGCCACGTCCCCGTTCAGGAATTTTAACCTGATTCCCTTTCGAAGTTCGCCCTATCAGACAGGCTTCCCTCGTCTCTTAGGATCAACTAACCCATGTGCAAGTGCCGTTCATATGGAACCTTTACCCTCTTCGGGGCTAGTTGATTCGGCAGTCAAACGCATCCAGAAAATCAATTCTCAAGAGGCCTCGCTTGGGATTTCTGAGGAAGCTTCATGGCACGCCAAATACAAAGATTCCGCCTACGTTTTTGTTGGAGGCATTCCTTATGATCTCACTGAAGGCGATCTCCTCGCCGTCTTCGCCCAGTATGGAGAGATTGTTGATGTTAATCTTATCAGAGACAAGGGTACAGGAAAATCAAAAGGCTTTGCCTTTGTTGCATATGAAGATCAGAGAAGTACAAATCTTGCTGTAGATAATTTGAATGGAGCACAGATTCTAGGTCGAATCATTAGGGTTGATCATGTGTCTAAATATAAAAAGAAGGAAGAAGAAGATGAAGAAGAAGAACAGAAAAAGAGGGAAGCTCGGGGTGTTTGTCGTGCATTTCAAAGGGGTGAATGTACCCGTGGAGCTGGATGCAAATTCTCCCACGATGAGCAGAGAGCTGCAAACACGGGCTGGGGGGCGGCAGAAGATGCAAGTTCAAAATGGGGGCATGACAAGTTCGACGATCGAAAAGATCATGACAGAGAATTGCGTGCAAAAGGAAGGAAAAATAGTGATGACTTAGAAAGACATCCAAGGGAAGCTAGTGGGAGGCTGAGGCAGGAGAATAAACTGAAAGGTTGGGATGGTAGTAAAGATTCAGAACTCAAGTCAAGAGAGGACCTTGGGAGAAAAGATGAGAAGAGGTTGAGAAGACATGATCTTGATGGAAATCGTCAACCGAAGTCAGGAGATGATCATTATAATAGGGAAGAGAAGAGATCTAGAAGGAACTTCGATGATAATGGGAAAGAAGAGAAGAGATTGAGAAAACATGATGACGATGATGAGACGAAATTAGAAGACGATGGCTATAAGAAGGAAGAAAATAGATATAGAAGGAACCAAGACAATGAACTCCCTCATCATTCAAGAAGAGACTACAATACGAGGGAAGAAGACAGATTGAAAAGGCATGGCGATGGAGAGTATCAAACAAAGCTGGGGGAAGATGATAAAAGAAGGGAAAAAGATATATCGGTAAGGCATCGCTCAGAATCACATAGGAGGGACAATCCAGATGAGAAGAGAGATTATCGATCCTCTCATGGTAGAGATTCTTCATCACACTCTCATAGAGATAGAAACGAAGACCGTCGTAGATAA

Protein sequence

MSTTGRERHSVLRIFKGRGGLTGHHTTCGALPATGPYLRLSHFQVGRLLNKKDNSSRGPRAMSLESLTLSPAATSPFRNFNLIPFRSSPYQTGFPRLLGSTNPCASAVHMEPLPSSGLVDSAVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVNLIRDKGTGKSKGFAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEEEDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDRKDHDRELRAKGRKNSDDLERHPREASGRLRQENKLKGWDGSKDSELKSREDLGRKDEKRLRRHDLDGNRQPKSGDDHYNREEKRSRRNFDDNGKEEKRLRKHDDDDETKLEDDGYKKEENRYRRNQDNELPHHSRRDYNTREEDRLKRHGDGEYQTKLGEDDKRREKDISVRHRSESHRRDNPDEKRDYRSSHGRDSSSHSHRDRNEDRRR

Homology

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BLAST of Lsi10G014270 vs. ExPASy Swiss-Prot
Match: Q10B98 (Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0826400 PE=2 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.9e-76
Identity = 173/313 (55.27%), Postives = 215/313 (68.69%), Query Frame = 0


Query: 123 VKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 182
           VKR Q IN +EA LGI E+ SWHAK+KDSAYVFVGGIPYDLTEGDLLAVFAQYGE+VDVN
Sbjct: 7   VKRTQVINQKEALLGIGEDGSWHAKFKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVN 66

Query: 183 LIRDKGTGKSKGFAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEEEDEEEE 242
           L+RDKGTGKSKGFAF+AYEDQRST LAVDNLNGA++LGRI+RVDHVSKYKKKEEEDEEE 
Sbjct: 67  LVRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGAKVLGRIVRVDHVSKYKKKEEEDEEEL 126

Query: 243 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDK-FDDRKDH 302
           QKKREARGVC AFQ+GEC RGA C++SHDEQR ANTGWG+ E++ ++W HD+  +    H
Sbjct: 127 QKKREARGVCYAFQKGECNRGASCRYSHDEQRNANTGWGSKEESKARWEHDRHHEPPMSH 186

Query: 303 DRELRAKGRKNSDDLERHPREASGRLRQENKLKGWDGSKDSELKSREDLGRKDEKRLRRH 362
            +   + G +   D  +   +++GR  Q ++ + +   +DS L+   D G KD  R  RH
Sbjct: 187 KKFPSSAGEQRFPDRAKEENKSTGREGQSSRSEAYK-DRDSRLR-HSDRGSKDHDRY-RH 246

Query: 363 DLDGNRQPKSGDDHYNREEKRSRRNFDDNGKEEKRLRKHDDDDETKLEDDGYKKEENRYR 422
           D    R P+       R   R  +  D+  +  +   KHD+ D+ +   D         R
Sbjct: 247 D----RSPERSRGDRQRNNDRYAQGRDEKSERYRSEVKHDEGDQKRSRRDTDSSGHYERR 306

Query: 423 RNQDNELPHHSRR 435
            N+D+E    SRR
Sbjct: 307 GNEDSERYRKSRR 312

[Close]

BLAST of Lsi10G014270 vs. ExPASy Swiss-Prot
Match: Q9SD61 (Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=At3g47120 PE=2 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.1e-71
Identity = 178/336 (52.98%), Postives = 218/336 (64.88%), Query Frame = 0


Query: 123 VKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 182
           VK +QKIN++E+ LGIS+EASWHAKYK+SAYV+VGGIP+DLTEGDLLAVF+QYGEIVDVN
Sbjct: 7   VKNLQKINARESDLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVN 66

Query: 183 LIRDKGTGKSKGFAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEEEDEEEE 242
           LIRDKGTGKSKGFAF+AYEDQRST LAVDNLNGA +LGR I+VDH   YKK EEEDEE  
Sbjct: 67  LIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKKHEEEDEETR 126

Query: 243 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDRKDHD 302
           ++ REARGVCRAFQRGECTRG  CKFSHDE+RAANTGWG  ED SSKW HDK  + +   
Sbjct: 127 RQNREARGVCRAFQRGECTRGDSCKFSHDEKRAANTGWGHEEDRSSKWDHDKNREGRGVC 186

Query: 303 REL------RAKGRKNSDDLERHPREASGRLRQENKLKGWDGSK-DSELKSREDLGRKDE 362
           R        R    K S D +R     +G   +E++   WD  K +   K     G + +
Sbjct: 187 RAFQRGECTRGDSCKFSHDEKR--AATTGWGHEEDRSSKWDQDKLNGAKKGGTSFGNRGD 246

Query: 363 KRLRRHDLDGNRQPKSGDDHYNREEKRSRRNFDDNG---------KEEKRLRKHDDDDET 422
            +    +    R    GD  Y R ++R R + +D G         KE+KR  ++D+    
Sbjct: 247 FKPDVEE-KSYRGRGDGDASYGRPKERERVDREDMGPRSRDAYDMKEQKRSGRYDNAYSR 306

Query: 423 KLEDD-GYKKEENRYRRNQDNELPHHSRRDYNTREE 442
           +  D+  Y +E+   R     +    SRRD N REE
Sbjct: 307 RHNDEIDYVREDKGSRAQDWEKRKAESRRDRNDREE 339

[Close]

BLAST of Lsi10G014270 vs. ExPASy Swiss-Prot
Match: Q9Y388 (RNA-binding motif protein, X-linked 2 OS=Homo sapiens OX=9606 GN=RBMX2 PE=1 SV=2)

HSP 1 Score: 142.5 bits (358), Expect = 1.3e-32
Identity = 117/331 (35.35%), Postives = 177/331 (53.47%), Query Frame = 0


Query: 123 VKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 182
           VK I ++N +E  LG++++ SWH++YKDSA++F+GG+PY+LTEGD++ VF+QYGEIV++N
Sbjct: 7   VKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNIN 66

Query: 183 LIRDKGTGKSKGFAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEEEDEEEE 242
           L+RDK TGKSKGF F+ YEDQRST LAVDN NG +I GR IRVDHVS Y+  ++ +E ++
Sbjct: 67  LVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKDSEEIDD 126

Query: 243 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDRKDHD 302
                   V R  Q     +G G +              ++ED      H K  D+K+  
Sbjct: 127 --------VTRQLQE----KGCGARTPSPSLSE------SSEDEKPTKKHKK--DKKEKK 186

Query: 303 RELRAKGRKNSDDLERHPREASGRLRQENKLKGWDGSKDSELKSREDLGRKDEKRLRRHD 362
           ++ + K + + +     P  +S R R+  K K   G K    K+ E   +K E R     
Sbjct: 187 KKKKEKEKADREVQAEQPSSSSPR-RKTVKEKDDTGPKKHSSKNSE-RAQKSEPR----- 246

Query: 363 LDGNRQPKS------GDDHYNREEKRSRRNFDDNGKEEKRLRKHDDDDETKLEDDGYKKE 422
            +G + PKS      G +   RE K+ +   +      +  R    +++T++ D G   +
Sbjct: 247 -EGQKLPKSRTAYSGGAEDLERELKKEKPKHEHKSSSRREAR----EEKTRIRDRGRSSD 300

Query: 423 ENRYRRNQDNELPHHSRRDYNTREEDRLKRH 448
            +    N  +E      R Y +R   R K H
Sbjct: 307 AHSSWYNGRSE-----GRSYRSRSRSRDKSH 300

[Close]

BLAST of Lsi10G014270 vs. ExPASy Swiss-Prot
Match: B0BN49 (RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus OX=10116 GN=Rbmx2 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-30
Identity = 113/339 (33.33%), Postives = 178/339 (52.51%), Query Frame = 0


Query: 123 VKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 182
           VK I ++N +E  LG++E+ SWH++YKDSA++F+GG+PY+LTEGD++ VF+QYGEIV++N
Sbjct: 7   VKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNIN 66

Query: 183 LIRDKGTGKSKGFAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEEEDEEEE 242
           L+RDK TGKSKGF F+ YEDQRST LAVDN NG +I GR IRVDHV+ Y+  +E ++ ++
Sbjct: 67  LVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVANYRAPQESEDVDD 126

Query: 243 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDRKDHD 302
                   V R  Q     +G G K         ++    +ED  +K       D+K+  
Sbjct: 127 --------VTRELQE----KGCGAK------TPPSSPPEVSEDEDAKVTKKPKKDKKE-- 186

Query: 303 RELRAKGRKNSDDLERHPREASGRLRQENKLKGWDGSKDSELKSREDLGRKDEKRLRRHD 362
                  +K   + E+  R     L   ++ K     K+++ +S +    K  +R ++ +
Sbjct: 187 -------KKKKKEKEKTERPVQAELPSCSRSK---TVKETDEQSAKKHSSKPSERAQKSE 246

Query: 363 LDGNRQPKSGDDHYNREEKRSRRNFDDNGKEEKRLRKHDDDDETKLEDDGYKKEENRYRR 422
               ++  SG     R   R R   +   + +K   KH+    ++ E +   ++++R R 
Sbjct: 247 CRERKKSHSGSPD-GRTSCRGRAE-EPEWEAKKEKHKHEHKPSSRREGEEKSRDKDRGRS 306

Query: 423 NQDNELPHH---------SRRDYNTREEDRLKRHGDGEY 453
           +  +   HH         SR    +R  DR  RH    Y
Sbjct: 307 SGTHSSRHHGHSEGRSHRSRSRSRSRSPDRSHRHKKHRY 313

[Close]

BLAST of Lsi10G014270 vs. ExPASy Swiss-Prot
Match: Q8R0F5 (RNA-binding motif protein, X-linked 2 OS=Mus musculus OX=10090 GN=Rbmx2 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.6e-30
Identity = 126/377 (33.42%), Postives = 192/377 (50.93%), Query Frame = 0


Query: 123 VKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 182
           VK I ++N +E  LG++E+ SWH++YK SA++FVGG+PY+LTEGD++ VF+QYGEIV++N
Sbjct: 7   VKLINELNEREVQLGVAEKVSWHSEYKHSAWIFVGGLPYELTEGDIICVFSQYGEIVNIN 66

Query: 183 LIRDKGTGKSKGFAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEEEDEEEE 242
           L+RDK TGKSKGF F+ YEDQRST LAVDN NG +I GR IRVDHVS Y+  +E ++ ++
Sbjct: 67  LVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVSNYRAPQESEDVDD 126

Query: 243 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDRKDHD 302
                   V R  Q     +G G K          T   +  + S           +D D
Sbjct: 127 --------VTRELQE----KGCGVK----------TPPSSPPEVS-----------EDED 186

Query: 303 RELRAKGRKNSDDLERHPRE-ASGRLRQENKLKGWDGSKDSELKSREDLGRKDEKRLRRH 362
            +L  K +K+  + ++  +E   G+ + E        S+ + +K      +KDE+  R+H
Sbjct: 187 AKLTKKHKKDKKEKKKRKKEKTEGQAQAEQP----SCSRSATVKE-----KKDERASRKH 246

Query: 363 DLDGNRQPKSGDDHYNREEKRSRRNFDDNGKEEKRLRKHDDDDETKLEDDGYKKEENRYR 422
               + + +  +   +RE K+S     D G+     R  D + + + E   + + ++  R
Sbjct: 247 SSKTSERAQKSE---HRESKKSHSGSPD-GRSSYHARAEDPECKARKEKPKH-EHKSASR 306

Query: 423 RNQDNELPHHSRRDYNTREEDRLKRHGDGEYQTKLGEDDKRREKDISVRHRSESHRRDNP 482
           R  + +     R   +     R + H DG          + R  D S RH+   H R+  
Sbjct: 307 REAEEKSRERERGRSSGTHSGRHRGHSDGRSHR---SRSRSRSPDKSHRHKKYRHSRE-- 326

Query: 483 DEKRDYRSSHGRDSSSH 499
              RD  S HG D   H
Sbjct: 367 ---RD--SYHGSDRRHH 326

[Close]

BLAST of Lsi10G014270 vs. ExPASy TrEMBL
Match: A0A5D3CVY9 (Zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00620 PE=4 SV=1)

HSP 1 Score: 627.1 bits (1616), Expect = 6.5e-176
Identity = 342/391 (87.47%), Postives = 360/391 (92.07%), Query Frame = 0


Query: 123 VKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 182
           VKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN
Sbjct: 7   VKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 66

Query: 183 LIRDKGTGKSKGFAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEEEDEEEE 242
           LIRDKGTGKSKG+AFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEEEDEEEE
Sbjct: 67  LIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEEEDEEEE 126

Query: 243 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDRKDHD 302
           QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD R +HD
Sbjct: 127 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDSRTNHD 186

Query: 303 RELRAKGRKNSDDLERHPREASGRLRQENKLKGWDGSKDSELKSREDLGRKDEKRLRRHD 362
           +ELRAKGRKNSDDL RHPRE SG LRQEN+ KGWD SK SELK RED  R+DEKR RR+D
Sbjct: 187 KELRAKGRKNSDDLGRHPRETSGSLRQENRPKGWDDSKGSELKPREDHWRRDEKRSRRYD 246

Query: 363 LDGNRQPKSGDDHYNREEKRSRRN--FDDNGKEEKRLRKHDDDDETKLEDDGYKKEENRY 422
           LDGN  PK GDD Y REEKRS RN  +DDN K+EKR RKHD+D+E KLEDD Y+KEENRY
Sbjct: 247 LDGNPDPKLGDDRYKREEKRSTRNHEYDDNRKDEKRSRKHDNDEEMKLEDDRYRKEENRY 306

Query: 423 RRNQDNELPHHSRRDYNTREEDR-LKRHGDGEYQTKLGEDDKRREKDISVRHRSESHRRD 482
           RRNQDNELP HSRR+YNTREEDR  KRHGD EYQ KLGEDDKRRE+DISVRHRSESHRR+
Sbjct: 307 RRNQDNELPQHSRRNYNTREEDRSSKRHGDEEYQPKLGEDDKRRERDISVRHRSESHRRE 366

Query: 483 NPDEKRDYRSSH-GRDSSSHSHRDRNEDRRR 510
           NP+EKRD+RSSH GRDSSSHSH +RNEDRRR
Sbjct: 367 NPNEKRDFRSSHGGRDSSSHSHTERNEDRRR 397

[Close]

BLAST of Lsi10G014270 vs. ExPASy TrEMBL
Match: A0A0A0KZW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308540 PE=4 SV=1)

HSP 1 Score: 626.7 bits (1615), Expect = 8.4e-176
Identity = 339/389 (87.15%), Postives = 358/389 (92.03%), Query Frame = 0


Query: 123 VKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 182
           VKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN
Sbjct: 7   VKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 66

Query: 183 LIRDKGTGKSKGFAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEEEDEEEE 242
           LIRDKGTGKSKG+AFVAYEDQRSTNLAVDNLNGAQILGRI+RVDHVSKYKKKEEEDEEEE
Sbjct: 67  LIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEEEDEEEE 126

Query: 243 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDRKDHD 302
           QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAA+TGWGAAEDASSKWGHDKFD RK+HD
Sbjct: 127 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDASSKWGHDKFDSRKNHD 186

Query: 303 RELRAKGRKNSDDLERHPREASGRLRQENKLKGWDGSKDSELKSREDLGRKDEKRLRRHD 362
           +EL AKGRK SD+L RHPRE SG LRQEN+ +GWD SK+SELKSRED G KDEKR RR+D
Sbjct: 187 KELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEKRSRRYD 246

Query: 363 LDGNRQPKSGDDHYNREEKRSRRNFDDNGKEEKRLRKHDDDDETKLEDDGYKKEENRYRR 422
           LDGN  PKSGDD Y  EEKRS RN DDN K+EKR RKHD+DDE KLEDD Y+KEENRYRR
Sbjct: 247 LDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDNDDEMKLEDDRYRKEENRYRR 306

Query: 423 NQDNELPHHSRRDYNTREEDR-LKRHGDGEYQTKLGEDDKRREKDISVRHRSESHRRDNP 482
           NQDNELP HSRRDY TREEDR  KRHGD EY  KL EDDKRRE+D+SVRHRSES+RR+NP
Sbjct: 307 NQDNELPQHSRRDYKTREEDRSSKRHGDKEYPPKLREDDKRRERDVSVRHRSESYRRENP 366

Query: 483 DEKRDYRSSH-GRDSSSHSHRDRNEDRRR 510
           DEKRDYRSSH GRDSSSHSHR+RNEDRRR
Sbjct: 367 DEKRDYRSSHGGRDSSSHSHRERNEDRRR 395

[Close]

BLAST of Lsi10G014270 vs. ExPASy TrEMBL
Match: A0A5A7TUW9 (Zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G00260 PE=4 SV=1)

HSP 1 Score: 624.8 bits (1610), Expect = 3.2e-175
Identity = 340/389 (87.40%), Postives = 357/389 (91.77%), Query Frame = 0


Query: 123 VKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 182
           VKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN
Sbjct: 7   VKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 66

Query: 183 LIRDKGTGKSKGFAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEEEDEEEE 242
           LIRDKGTGKSKG+AFVAYEDQRSTNLAVDNLNGAQILGRI+RVDH SKYKKKEEEDEEE+
Sbjct: 67  LIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEEEDEEEQ 126

Query: 243 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDRKDHD 302
           QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAA+TGWG AEDASSKWGHDKFD RK+ +
Sbjct: 127 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFDGRKNDN 186

Query: 303 RELRAKGRKNSDDLERHPREASGRLRQENKLKGWDGSKDSELKSREDLGRKDEKRLRRHD 362
           +ELRAKGRKNSD+L RHPRE SG LRQEN+LKG D SK+SELKSRED G KDEKR RR+D
Sbjct: 187 KELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEKRSRRYD 246

Query: 363 LDGNRQPKSGDDHYNREEKRSRRNFDDNGKEEKRLRKHDDDDETKLEDDGYKKEENRYRR 422
           LDGN  PKSGDDHY REEKRSRRN DDN K+EKR RKHDDDDE K EDD Y+KEENRYRR
Sbjct: 247 LDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKEENRYRR 306

Query: 423 NQDNELPHHSRRDYNTREEDR-LKRHGDGEYQTKLGEDDKRREKDISVRHRSESHRRDNP 482
           NQDNELP HSRRDYNTREEDR  KRHGDGEY  KL EDDKRRE+DISVRHRSESHRR+NP
Sbjct: 307 NQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSESHRRENP 366

Query: 483 DEKRDYRSSH-GRDSSSHSHRDRNEDRRR 510
           DEKRDY SS  GRDSSSHSHR+RNED  R
Sbjct: 367 DEKRDYWSSQGGRDSSSHSHRERNEDCHR 395

[Close]

BLAST of Lsi10G014270 vs. ExPASy TrEMBL
Match: A0A1S3BLJ3 (zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491164 PE=4 SV=1)

HSP 1 Score: 624.8 bits (1610), Expect = 3.2e-175
Identity = 340/389 (87.40%), Postives = 357/389 (91.77%), Query Frame = 0


Query: 123 VKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 182
           VKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN
Sbjct: 7   VKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 66

Query: 183 LIRDKGTGKSKGFAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEEEDEEEE 242
           LIRDKGTGKSKG+AFVAYEDQRSTNLAVDNLNGAQILGRI+RVDH SKYKKKEEEDEEE+
Sbjct: 67  LIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEEEDEEEQ 126

Query: 243 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDRKDHD 302
           QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAA+TGWG AEDASSKWGHDKFD RK+ +
Sbjct: 127 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFDGRKNDN 186

Query: 303 RELRAKGRKNSDDLERHPREASGRLRQENKLKGWDGSKDSELKSREDLGRKDEKRLRRHD 362
           +ELRAKGRKNSD+L RHPRE SG LRQEN+LKG D SK+SELKSRED G KDEKR RR+D
Sbjct: 187 KELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEKRSRRYD 246

Query: 363 LDGNRQPKSGDDHYNREEKRSRRNFDDNGKEEKRLRKHDDDDETKLEDDGYKKEENRYRR 422
           LDGN  PKSGDDHY REEKRSRRN DDN K+EKR RKHDDDDE K EDD Y+KEENRYRR
Sbjct: 247 LDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKEENRYRR 306

Query: 423 NQDNELPHHSRRDYNTREEDR-LKRHGDGEYQTKLGEDDKRREKDISVRHRSESHRRDNP 482
           NQDNELP HSRRDYNTREEDR  KRHGDGEY  KL EDDKRRE+DISVRHRSESHRR+NP
Sbjct: 307 NQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSESHRRENP 366

Query: 483 DEKRDYRSSH-GRDSSSHSHRDRNEDRRR 510
           DEKRDY SS  GRDSSSHSHR+RNED  R
Sbjct: 367 DEKRDYWSSQGGRDSSSHSHRERNEDCHR 395

[Close]

BLAST of Lsi10G014270 vs. ExPASy TrEMBL
Match: A0A1S3BLK5 (zinc finger CCCH domain-containing protein 25-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491164 PE=4 SV=1)

HSP 1 Score: 622.5 bits (1604), Expect = 1.6e-174
Identity = 337/384 (87.76%), Postives = 354/384 (92.19%), Query Frame = 0


Query: 123 VKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 182
           VKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN
Sbjct: 7   VKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 66

Query: 183 LIRDKGTGKSKGFAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEEEDEEEE 242
           LIRDKGTGKSKG+AFVAYEDQRSTNLAVDNLNGAQILGRI+RVDH SKYKKKEEEDEEE+
Sbjct: 67  LIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEEEDEEEQ 126

Query: 243 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDRKDHD 302
           QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAA+TGWG AEDASSKWGHDKFD RK+ +
Sbjct: 127 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFDGRKNDN 186

Query: 303 RELRAKGRKNSDDLERHPREASGRLRQENKLKGWDGSKDSELKSREDLGRKDEKRLRRHD 362
           +ELRAKGRKNSD+L RHPRE SG LRQEN+LKG D SK+SELKSRED G KDEKR RR+D
Sbjct: 187 KELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEKRSRRYD 246

Query: 363 LDGNRQPKSGDDHYNREEKRSRRNFDDNGKEEKRLRKHDDDDETKLEDDGYKKEENRYRR 422
           LDGN  PKSGDDHY REEKRSRRN DDN K+EKR RKHDDDDE K EDD Y+KEENRYRR
Sbjct: 247 LDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKEENRYRR 306

Query: 423 NQDNELPHHSRRDYNTREEDR-LKRHGDGEYQTKLGEDDKRREKDISVRHRSESHRRDNP 482
           NQDNELP HSRRDYNTREEDR  KRHGDGEY  KL EDDKRRE+DISVRHRSESHRR+NP
Sbjct: 307 NQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSESHRRENP 366

Query: 483 DEKRDYRSSH-GRDSSSHSHRDRN 505
           DEKRDY SS  GRDSSSHSHR+RN
Sbjct: 367 DEKRDYWSSQGGRDSSSHSHRERN 390

[Close]

BLAST of Lsi10G014270 vs. NCBI nr
Match: XP_038902704.1 (zinc finger CCCH domain-containing protein 25-like [Benincasa hispida])

HSP 1 Score: 642.9 bits (1657), Expect = 2.3e-180
Identity = 349/387 (90.18%), Postives = 361/387 (93.28%), Query Frame = 0


Query: 123 VKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 182
           VKRIQKIN+QEASLGISEEASWHAKYKDSAYVF GGIPYDLTEGDLLAVFAQYGEIVDVN
Sbjct: 7   VKRIQKINAQEASLGISEEASWHAKYKDSAYVFAGGIPYDLTEGDLLAVFAQYGEIVDVN 66

Query: 183 LIRDKGTGKSKGFAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEEEDEEEE 242
           LIRDKGTGKSKG+AFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHV  YKKKEEEDEEEE
Sbjct: 67  LIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVHNYKKKEEEDEEEE 126

Query: 243 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDRKDHD 302
           QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDRKDHD
Sbjct: 127 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDRKDHD 186

Query: 303 RELRAKGRKNSDDLERHPREASGRLRQENKLKGWDGSKDSELKSREDLGRKDEKRLRRHD 362
           RELRAKGRKNSDDLERHPREASGRLRQENKLKGWD SK+ ELKSRED   KDEKR RRHD
Sbjct: 187 RELRAKGRKNSDDLERHPREASGRLRQENKLKGWDDSKELELKSREDHDWKDEKRSRRHD 246

Query: 363 LDGNRQPKSGDDHYNREEKRSRRNFDDNGKEEKRLRKHDDDDETKLEDDGYKKEENRYRR 422
           LDG+R+ KSGDD+YNREEKR +RN DDNGKEEKRLRK  DDDETKLED+ Y KEENRYRR
Sbjct: 247 LDGSRELKSGDDYYNREEKRFKRNHDDNGKEEKRLRKR-DDDETKLEDNRYMKEENRYRR 306

Query: 423 NQDNELPHHSRRDYNTREEDRLKRHGDGEYQTKLGEDDKRREKDISVRHRSESHRRDNPD 482
           NQD ELP HS+RDYN REEDR KRHGD EY  K  +DD RREKDISVRHRSESHRR+NPD
Sbjct: 307 NQDYELPQHSKRDYN-REEDRSKRHGDDEYWPKRRDDDSRREKDISVRHRSESHRRENPD 366

Query: 483 EKRDYRSSHGRDSSSHSHRDRNEDRRR 510
           EKRDYRSSHGRDSSSHSHR+RNEDRRR
Sbjct: 367 EKRDYRSSHGRDSSSHSHRERNEDRRR 391

[Close]

BLAST of Lsi10G014270 vs. NCBI nr
Match: TYK15418.1 (zinc finger CCCH domain-containing protein 25-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 627.1 bits (1616), Expect = 1.3e-175
Identity = 342/391 (87.47%), Postives = 360/391 (92.07%), Query Frame = 0


Query: 123 VKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 182
           VKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN
Sbjct: 7   VKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 66

Query: 183 LIRDKGTGKSKGFAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEEEDEEEE 242
           LIRDKGTGKSKG+AFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEEEDEEEE
Sbjct: 67  LIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEEEDEEEE 126

Query: 243 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDRKDHD 302
           QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD R +HD
Sbjct: 127 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDSRTNHD 186

Query: 303 RELRAKGRKNSDDLERHPREASGRLRQENKLKGWDGSKDSELKSREDLGRKDEKRLRRHD 362
           +ELRAKGRKNSDDL RHPRE SG LRQEN+ KGWD SK SELK RED  R+DEKR RR+D
Sbjct: 187 KELRAKGRKNSDDLGRHPRETSGSLRQENRPKGWDDSKGSELKPREDHWRRDEKRSRRYD 246

Query: 363 LDGNRQPKSGDDHYNREEKRSRRN--FDDNGKEEKRLRKHDDDDETKLEDDGYKKEENRY 422
           LDGN  PK GDD Y REEKRS RN  +DDN K+EKR RKHD+D+E KLEDD Y+KEENRY
Sbjct: 247 LDGNPDPKLGDDRYKREEKRSTRNHEYDDNRKDEKRSRKHDNDEEMKLEDDRYRKEENRY 306

Query: 423 RRNQDNELPHHSRRDYNTREEDR-LKRHGDGEYQTKLGEDDKRREKDISVRHRSESHRRD 482
           RRNQDNELP HSRR+YNTREEDR  KRHGD EYQ KLGEDDKRRE+DISVRHRSESHRR+
Sbjct: 307 RRNQDNELPQHSRRNYNTREEDRSSKRHGDEEYQPKLGEDDKRRERDISVRHRSESHRRE 366

Query: 483 NPDEKRDYRSSH-GRDSSSHSHRDRNEDRRR 510
           NP+EKRD+RSSH GRDSSSHSH +RNEDRRR
Sbjct: 367 NPNEKRDFRSSHGGRDSSSHSHTERNEDRRR 397

[Close]

BLAST of Lsi10G014270 vs. NCBI nr
Match: XP_004147921.1 (zinc finger CCCH domain-containing protein 25 [Cucumis sativus] >KGN54364.1 hypothetical protein Csa_018037 [Cucumis sativus])

HSP 1 Score: 626.7 bits (1615), Expect = 1.7e-175
Identity = 339/389 (87.15%), Postives = 358/389 (92.03%), Query Frame = 0


Query: 123 VKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 182
           VKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN
Sbjct: 7   VKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 66

Query: 183 LIRDKGTGKSKGFAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEEEDEEEE 242
           LIRDKGTGKSKG+AFVAYEDQRSTNLAVDNLNGAQILGRI+RVDHVSKYKKKEEEDEEEE
Sbjct: 67  LIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEEEDEEEE 126

Query: 243 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDRKDHD 302
           QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAA+TGWGAAEDASSKWGHDKFD RK+HD
Sbjct: 127 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDASSKWGHDKFDSRKNHD 186

Query: 303 RELRAKGRKNSDDLERHPREASGRLRQENKLKGWDGSKDSELKSREDLGRKDEKRLRRHD 362
           +EL AKGRK SD+L RHPRE SG LRQEN+ +GWD SK+SELKSRED G KDEKR RR+D
Sbjct: 187 KELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEKRSRRYD 246

Query: 363 LDGNRQPKSGDDHYNREEKRSRRNFDDNGKEEKRLRKHDDDDETKLEDDGYKKEENRYRR 422
           LDGN  PKSGDD Y  EEKRS RN DDN K+EKR RKHD+DDE KLEDD Y+KEENRYRR
Sbjct: 247 LDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDNDDEMKLEDDRYRKEENRYRR 306

Query: 423 NQDNELPHHSRRDYNTREEDR-LKRHGDGEYQTKLGEDDKRREKDISVRHRSESHRRDNP 482
           NQDNELP HSRRDY TREEDR  KRHGD EY  KL EDDKRRE+D+SVRHRSES+RR+NP
Sbjct: 307 NQDNELPQHSRRDYKTREEDRSSKRHGDKEYPPKLREDDKRRERDVSVRHRSESYRRENP 366

Query: 483 DEKRDYRSSH-GRDSSSHSHRDRNEDRRR 510
           DEKRDYRSSH GRDSSSHSHR+RNEDRRR
Sbjct: 367 DEKRDYRSSHGGRDSSSHSHRERNEDRRR 395

[Close]

BLAST of Lsi10G014270 vs. NCBI nr
Match: XP_008449221.1 (PREDICTED: zinc finger CCCH domain-containing protein 25-like isoform X1 [Cucumis melo] >KAA0045039.1 zinc finger CCCH domain-containing protein 25-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 624.8 bits (1610), Expect = 6.6e-175
Identity = 340/389 (87.40%), Postives = 357/389 (91.77%), Query Frame = 0


Query: 123 VKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 182
           VKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN
Sbjct: 7   VKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 66

Query: 183 LIRDKGTGKSKGFAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEEEDEEEE 242
           LIRDKGTGKSKG+AFVAYEDQRSTNLAVDNLNGAQILGRI+RVDH SKYKKKEEEDEEE+
Sbjct: 67  LIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEEEDEEEQ 126

Query: 243 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDRKDHD 302
           QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAA+TGWG AEDASSKWGHDKFD RK+ +
Sbjct: 127 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFDGRKNDN 186

Query: 303 RELRAKGRKNSDDLERHPREASGRLRQENKLKGWDGSKDSELKSREDLGRKDEKRLRRHD 362
           +ELRAKGRKNSD+L RHPRE SG LRQEN+LKG D SK+SELKSRED G KDEKR RR+D
Sbjct: 187 KELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEKRSRRYD 246

Query: 363 LDGNRQPKSGDDHYNREEKRSRRNFDDNGKEEKRLRKHDDDDETKLEDDGYKKEENRYRR 422
           LDGN  PKSGDDHY REEKRSRRN DDN K+EKR RKHDDDDE K EDD Y+KEENRYRR
Sbjct: 247 LDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKEENRYRR 306

Query: 423 NQDNELPHHSRRDYNTREEDR-LKRHGDGEYQTKLGEDDKRREKDISVRHRSESHRRDNP 482
           NQDNELP HSRRDYNTREEDR  KRHGDGEY  KL EDDKRRE+DISVRHRSESHRR+NP
Sbjct: 307 NQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSESHRRENP 366

Query: 483 DEKRDYRSSH-GRDSSSHSHRDRNEDRRR 510
           DEKRDY SS  GRDSSSHSHR+RNED  R
Sbjct: 367 DEKRDYWSSQGGRDSSSHSHRERNEDCHR 395

[Close]

BLAST of Lsi10G014270 vs. NCBI nr
Match: XP_008449231.1 (PREDICTED: zinc finger CCCH domain-containing protein 25-like isoform X2 [Cucumis melo])

HSP 1 Score: 622.5 bits (1604), Expect = 3.3e-174
Identity = 337/384 (87.76%), Postives = 354/384 (92.19%), Query Frame = 0


Query: 123 VKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 182
           VKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN
Sbjct: 7   VKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 66

Query: 183 LIRDKGTGKSKGFAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEEEDEEEE 242
           LIRDKGTGKSKG+AFVAYEDQRSTNLAVDNLNGAQILGRI+RVDH SKYKKKEEEDEEE+
Sbjct: 67  LIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEEEDEEEQ 126

Query: 243 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDRKDHD 302
           QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAA+TGWG AEDASSKWGHDKFD RK+ +
Sbjct: 127 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFDGRKNDN 186

Query: 303 RELRAKGRKNSDDLERHPREASGRLRQENKLKGWDGSKDSELKSREDLGRKDEKRLRRHD 362
           +ELRAKGRKNSD+L RHPRE SG LRQEN+LKG D SK+SELKSRED G KDEKR RR+D
Sbjct: 187 KELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEKRSRRYD 246

Query: 363 LDGNRQPKSGDDHYNREEKRSRRNFDDNGKEEKRLRKHDDDDETKLEDDGYKKEENRYRR 422
           LDGN  PKSGDDHY REEKRSRRN DDN K+EKR RKHDDDDE K EDD Y+KEENRYRR
Sbjct: 247 LDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKEENRYRR 306

Query: 423 NQDNELPHHSRRDYNTREEDR-LKRHGDGEYQTKLGEDDKRREKDISVRHRSESHRRDNP 482
           NQDNELP HSRRDYNTREEDR  KRHGDGEY  KL EDDKRRE+DISVRHRSESHRR+NP
Sbjct: 307 NQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLREDDKRRERDISVRHRSESHRRENP 366

Query: 483 DEKRDYRSSH-GRDSSSHSHRDRN 505
           DEKRDY SS  GRDSSSHSHR+RN
Sbjct: 367 DEKRDYWSSQGGRDSSSHSHRERN 390

[Close]

BLAST of Lsi10G014270 vs. TAIR 10
Match: AT3G47120.1 (RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 269.6 bits (688), Expect = 5.0e-72
Identity = 178/336 (52.98%), Postives = 218/336 (64.88%), Query Frame = 0


Query: 123 VKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 182
           VK +QKIN++E+ LGIS+EASWHAKYK+SAYV+VGGIP+DLTEGDLLAVF+QYGEIVDVN
Sbjct: 7   VKNLQKINARESDLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVN 66

Query: 183 LIRDKGTGKSKGFAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEEEDEEEE 242
           LIRDKGTGKSKGFAF+AYEDQRST LAVDNLNGA +LGR I+VDH   YKK EEEDEE  
Sbjct: 67  LIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKKHEEEDEETR 126

Query: 243 QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDRKDHD 302
           ++ REARGVCRAFQRGECTRG  CKFSHDE+RAANTGWG  ED SSKW HDK  + +   
Sbjct: 127 RQNREARGVCRAFQRGECTRGDSCKFSHDEKRAANTGWGHEEDRSSKWDHDKNREGRGVC 186

Query: 303 REL------RAKGRKNSDDLERHPREASGRLRQENKLKGWDGSK-DSELKSREDLGRKDE 362
           R        R    K S D +R     +G   +E++   WD  K +   K     G + +
Sbjct: 187 RAFQRGECTRGDSCKFSHDEKR--AATTGWGHEEDRSSKWDQDKLNGAKKGGTSFGNRGD 246

Query: 363 KRLRRHDLDGNRQPKSGDDHYNREEKRSRRNFDDNG---------KEEKRLRKHDDDDET 422
            +    +    R    GD  Y R ++R R + +D G         KE+KR  ++D+    
Sbjct: 247 FKPDVEE-KSYRGRGDGDASYGRPKERERVDREDMGPRSRDAYDMKEQKRSGRYDNAYSR 306

Query: 423 KLEDD-GYKKEENRYRRNQDNELPHHSRRDYNTREE 442
           +  D+  Y +E+   R     +    SRRD N REE
Sbjct: 307 RHNDEIDYVREDKGSRAQDWEKRKAESRRDRNDREE 339

[Close]

BLAST of Lsi10G014270 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-12
Identity = 34/105 (32.38%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 127 QKINSQ-EASLGISEEASWHA-KYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVNLI 186
           Q  N Q  A + +S  + + A +   S+ +F+GG+ Y + E  L   F +YGE+VD  +I
Sbjct: 13  QTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVI 72

Query: 187 RDKGTGKSKGFAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVS 230
            D+ TG+S+GF FV +    + + A+  L+G  + GR+++V++ +
Sbjct: 73  LDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 117

[Close]

BLAST of Lsi10G014270 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-12
Identity = 36/118 (30.51%), Postives = 69/118 (58.47%), Query Frame = 0


Query: 119 VDSAVKRIQKINSQEAS---LGISEEASWHAK-------YKDSAYVFVGGIPYDLTEGDL 178
           V+ A K ++K NS E +   L ++  A   ++       Y  +  ++VG +P+D+  G L
Sbjct: 164 VEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRL 223

Query: 179 LAVFAQYGEIVDVNLIRDKGTGKSKGFAFVAYEDQRSTNLAVDNLNGAQILGRIIRVD 227
             +F+++G++VD  ++ D+ TG+S+GF FV   ++   N+A+  L+G  + GR I+V+
Sbjct: 224 ERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVN 281

[Close]

BLAST of Lsi10G014270 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 68.2 bits (165), Expect = 2.2e-11
Identity = 28/72 (38.89%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 155 FVGGIPYDLTEGDLLAVFAQYGEIVDVNLIRDKGTGKSKGFAFVAYEDQRSTNLAVDNLN 214
           FVGG+ +   +  L   FAQYG+++D  +I D+ TG+S+GF FV ++D+++   A++ +N
Sbjct: 11  FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70

Query: 215 GAQILGRIIRVD 227
           G  + GR I V+
Sbjct: 71  GQDLDGRSITVN 82

[Close]

BLAST of Lsi10G014270 vs. TAIR 10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5 )

HSP 1 Score: 67.0 bits (162), Expect = 5.0e-11
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 151 SAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVNLIRDKGTGKSKGFAFVAYEDQRSTNLAV 210
           S+ +FVGGI Y   E  L   F++YGE+VD  +I D+ TG+S+GFAFV +      + A+
Sbjct: 33  SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92

Query: 211 DNLNGAQILGRIIRVDHVSK 231
             L+G  + GR IRV++ ++
Sbjct: 93  -QLDGQDLHGRRIRVNYATE 111

The following BLAST results are available for this feature:

BLAST of Lsi10G014270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q10B98	1.9e-76	55.27	Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa subsp. japonica OX...	[more]
Q9SD61	7.1e-71	52.98	Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9Y388	1.3e-32	35.35	RNA-binding motif protein, X-linked 2 OS=Homo sapiens OX=9606 GN=RBMX2 PE=1 SV=2	[more]
B0BN49	1.2e-30	33.33	RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus OX=10116 GN=Rbmx2 PE=...	[more]
Q8R0F5	3.6e-30	33.42	RNA-binding motif protein, X-linked 2 OS=Mus musculus OX=10090 GN=Rbmx2 PE=1 SV=...	[more]

BLAST of Lsi10G014270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CVY9	6.5e-176	87.47	Zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo va...	[more]
A0A0A0KZW7	8.4e-176	87.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308540 PE=4 SV=1	[more]
A0A5A7TUW9	3.2e-175	87.40	Zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo va...	[more]
A0A1S3BLJ3	3.2e-175	87.40	zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo OX...	[more]
A0A1S3BLK5	1.6e-174	87.76	zinc finger CCCH domain-containing protein 25-like isoform X2 OS=Cucumis melo OX...	[more]

BLAST of Lsi10G014270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902704.1	2.3e-180	90.18	zinc finger CCCH domain-containing protein 25-like [Benincasa hispida]	[more]
TYK15418.1	1.3e-175	87.47	zinc finger CCCH domain-containing protein 25-like isoform X1 [Cucumis melo var....	[more]
XP_004147921.1	1.7e-175	87.15	zinc finger CCCH domain-containing protein 25 [Cucumis sativus] >KGN54364.1 hypo...	[more]
XP_008449221.1	6.6e-175	87.40	PREDICTED: zinc finger CCCH domain-containing protein 25-like isoform X1 [Cucumi...	[more]
XP_008449231.1	3.3e-174	87.76	PREDICTED: zinc finger CCCH domain-containing protein 25-like isoform X2 [Cucumi...	[more]

BLAST of Lsi10G014270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47120.1	5.0e-72	52.98	RNA recognition motif (RRM)-containing protein	[more]
AT5G61030.1	1.2e-12	32.38	glycine-rich RNA-binding protein 3	[more]
AT5G50250.1	2.6e-12	30.51	chloroplast RNA-binding protein 31B	[more]
AT2G21660.2	2.2e-11	38.89	cold, circadian rhythm, and rna binding 2	[more]
AT1G74230.1	5.0e-11	41.25	glycine-rich RNA-binding protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 231..251
None	No IPR available	GENE3D	4.10.1000.10		coord: 234..313 e-value: 2.1E-7 score: 32.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 287..509
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 277..509
None	No IPR available	PANTHER	PTHR45880:SF1	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 122..424
None	No IPR available	PANTHER	PTHR45880	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 122..424
None	No IPR available	CDD	cd12411	RRM_ist3_like	coord: 143..229 e-value: 2.64221E-58 score: 185.92
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 153..226 e-value: 1.4E-26 score: 104.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 154..223 e-value: 2.5E-21 score: 75.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 152..230 score: 20.098822
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 248..272 e-value: 0.001 score: 28.3
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 251..271 e-value: 1.1E-4 score: 22.1
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 246..273 score: 14.802481
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 114..227 e-value: 3.0E-28 score: 100.6
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 143..231
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 249..271

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G014270.1	Lsi10G014270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005686	U2 snRNP
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding