Lsi10G014200 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G014200
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Thylakoid soluble phosphoprotein TSP
Location	chr10: 18300658 .. 18300951 (-)
RNA-Seq Expression	Lsi10G014200
Synteny	Lsi10G014200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTCTTCCAATCGCATTCTCTCCGGCCGCCGGACGTGTCTTCGCAGCCACGGCGGCGAAGGGCGCCGGCGAAAGCAAGAAGGAAAAGGGCCTTCTTGATTGGATCATCGGAAGCTTGAATAAGGATCAGCTTCTTGAAACTGACCCTGTTCTTCAAAAGGTCGAGGGTAAGGACGCTGCCGCCGGTAACGGCACCGGCACCGTCCGCGGTGGCCGGAAGAATTCTGTCCAAGTTCCTCCGAAGAAGAACGGCGGCGGATTTGGTGGTCTCTTTGCCAAGAAAGAATGA

mRNA sequence

ATGGCCTCTCTTCCAATCGCATTCTCTCCGGCCGCCGGACGTGTCTTCGCAGCCACGGCGGCGAAGGGCGCCGGCGAAAGCAAGAAGGAAAAGGGCCTTCTTGATTGGATCATCGGAAGCTTGAATAAGGATCAGCTTCTTGAAACTGACCCTGTTCTTCAAAAGGTCGAGGGTAAGGACGCTGCCGCCGGTAACGGCACCGGCACCGTCCGCGGTGGCCGGAAGAATTCTGTCCAAGTTCCTCCGAAGAAGAACGGCGGCGGATTTGGTGGTCTCTTTGCCAAGAAAGAATGA

Coding sequence (CDS)

ATGGCCTCTCTTCCAATCGCATTCTCTCCGGCCGCCGGACGTGTCTTCGCAGCCACGGCGGCGAAGGGCGCCGGCGAAAGCAAGAAGGAAAAGGGCCTTCTTGATTGGATCATCGGAAGCTTGAATAAGGATCAGCTTCTTGAAACTGACCCTGTTCTTCAAAAGGTCGAGGGTAAGGACGCTGCCGCCGGTAACGGCACCGGCACCGTCCGCGGTGGCCGGAAGAATTCTGTCCAAGTTCCTCCGAAGAAGAACGGCGGCGGATTTGGTGGTCTCTTTGCCAAGAAAGAATGA

Protein sequence

MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE

Homology

[Close]

BLAST of Lsi10G014200 vs. ExPASy TrEMBL
Match: A0A0A0KC59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187910 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.1e-43
Identity = 94/97 (96.91%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 AAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE 98
          AA+GNGTG+VRGGRKNSVQVPPKKNGGGFGGLFAKK+
Sbjct: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97

[Close]

BLAST of Lsi10G014200 vs. ExPASy TrEMBL
Match: A0A5A7V5S9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00530 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.3e-40
Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 AAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE 98
            +GNGTGTVR GRKNSVQ+PPKKNGG FGGLFAKK+
Sbjct: 61 GTSGNGTGTVR-GRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of Lsi10G014200 vs. ExPASy TrEMBL
Match: A0A1S3CKK5 (uncharacterized protein LOC103502033 OS=Cucumis melo OX=3656 GN=LOC103502033 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.3e-40
Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 AAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE 98
            +GNGTGTVR GRKNSVQ+PPKKNGG FGGLFAKK+
Sbjct: 61 GTSGNGTGTVR-GRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of Lsi10G014200 vs. ExPASy TrEMBL
Match: A0A6J1L2X7 (uncharacterized protein LOC111499927 OS=Cucurbita maxima OX=3661 GN=LOC111499927 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.8e-33
Identity = 80/97 (82.47%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 AAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE 98
            A NG GTVRGG+KNSVQVPPKKN G FGGLFAKK+
Sbjct: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 95

[Close]

BLAST of Lsi10G014200 vs. ExPASy TrEMBL
Match: A0A6J1G777 (uncharacterized protein LOC111451452 OS=Cucurbita moschata OX=3662 GN=LOC111451452 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.8e-33
Identity = 80/97 (82.47%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASL  AFSPAAGRVFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 AAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE 98
            A NG GTVRGG+KNSVQVPPKKN G FGGLFAKK+
Sbjct: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 95

[Close]

BLAST of Lsi10G014200 vs. NCBI nr
Match: XP_004143212.1 (uncharacterized protein LOC101205268 [Cucumis sativus] >KGN47098.1 hypothetical protein Csa_020752 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 4.4e-43
Identity = 94/97 (96.91%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 AAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE 98
          AA+GNGTG+VRGGRKNSVQVPPKKNGGGFGGLFAKK+
Sbjct: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97

[Close]

BLAST of Lsi10G014200 vs. NCBI nr
Match: XP_038901860.1 (uncharacterized protein LOC120088545 [Benincasa hispida])

HSP 1 Score: 173.7 bits (439), Expect = 7.7e-40
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAA RVFAATAAKGAGESKKE+GLLDWIIGSLNKDQLLETDPVLQKVEGK 
Sbjct: 1  MASLPIAFSPAAVRVFAATAAKGAGESKKEQGLLDWIIGSLNKDQLLETDPVLQKVEGK- 60

Query: 61 AAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE 98
          AAAGNG+GTVRGGRKNSVQVPPKKNGGGFGGLFAKK+
Sbjct: 61 AAAGNGSGTVRGGRKNSVQVPPKKNGGGFGGLFAKKD 96

[Close]

BLAST of Lsi10G014200 vs. NCBI nr
Match: XP_008464052.1 (PREDICTED: uncharacterized protein LOC103502033 [Cucumis melo] >KAA0061846.1 uncharacterized protein E6C27_scaffold89G00830 [Cucumis melo var. makuwa] >TYK15410.1 uncharacterized protein E5676_scaffold571G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 AAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE 98
            +GNGTGTVR GRKNSVQ+PPKKNGG FGGLFAKK+
Sbjct: 61 GTSGNGTGTVR-GRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of Lsi10G014200 vs. NCBI nr
Match: KAG7010512.1 (hypothetical protein SDJN02_27306, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155.6 bits (392), Expect = 2.2e-34
Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSL +DQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKD 60

Query: 61 AAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE 98
              + +GTV GGRKNSVQVPPKKN GGFGGLFAK++
Sbjct: 61 ----SNSGTVSGGRKNSVQVPPKKN-GGFGGLFAKRD 92

[Close]

BLAST of Lsi10G014200 vs. NCBI nr
Match: XP_023532336.1 (uncharacterized protein LOC111794525 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.4 bits (381), Expect = 4.1e-33
Identity = 81/97 (83.51%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASL  AFSPAAGRVFAATAAKGAGESKKEKG+LDWI+G + KDQLLETDPVLQKVEGK+
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGESKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 AAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGLFAKKE 98
            A NG GTVRGG+KNSVQVPPKKN G FGGLFAKK+
Sbjct: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 95

[Close]

BLAST of Lsi10G014200 vs. TAIR 10
Match: AT3G47070.1 (LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 9.1e-15
Identity = 41/93 (44.09%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNK-DQLLETDPVLQKVEGK 60
          ++SL ++F+PA  RV+A +   G+G  K+EK  +D+++G + K DQ  ET+P+L+KV+ K
Sbjct: 2  VSSLLMSFAPATVRVYATSTKGGSGGPKEEKNPIDFVLGFMTKQDQFYETNPLLKKVDEK 61

Query: 61 DAAAGNGTGTVRGGRKNSVQVPPKKNGGGFGGL 93
          +     G GTVRGG+ ++    PKK+ GGFGGL
Sbjct: 62 EGTTTGGRGTVRGGKNSAPTPVPKKSEGGFGGL 94

The following BLAST results are available for this feature:

BLAST of Lsi10G014200 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi10G014200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC59	2.1e-43	96.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187910 PE=4 SV=1	[more]
A0A5A7V5S9	8.3e-40	92.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CKK5	8.3e-40	92.78	uncharacterized protein LOC103502033 OS=Cucumis melo OX=3656 GN=LOC103502033 PE=...	[more]
A0A6J1L2X7	5.8e-33	82.47	uncharacterized protein LOC111499927 OS=Cucurbita maxima OX=3661 GN=LOC111499927...	[more]
A0A6J1G777	5.8e-33	82.47	uncharacterized protein LOC111451452 OS=Cucurbita moschata OX=3662 GN=LOC1114514...	[more]

BLAST of Lsi10G014200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143212.1	4.4e-43	96.91	uncharacterized protein LOC101205268 [Cucumis sativus] >KGN47098.1 hypothetical ...	[more]
XP_038901860.1	7.7e-40	94.85	uncharacterized protein LOC120088545 [Benincasa hispida]	[more]
XP_008464052.1	1.7e-39	92.78	PREDICTED: uncharacterized protein LOC103502033 [Cucumis melo] >KAA0061846.1 unc...	[more]
KAG7010512.1	2.2e-34	86.60	hypothetical protein SDJN02_27306, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023532336.1	4.1e-33	83.51	uncharacterized protein LOC111794525 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi10G014200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47070.1	9.1e-15	44.09	LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast ...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021584	Thylakoid soluble phosphoprotein TSP9	PFAM	PF11493	TSP9	coord: 20..95 e-value: 6.2E-24 score: 84.5
IPR021584	Thylakoid soluble phosphoprotein TSP9	PANTHER	PTHR36370	THYLAKOID SOLUBLE PHOSPHOPROTEIN	coord: 1..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..97
None	No IPR available	PANTHER	PTHR36370:SF1	THYLAKOID SOLUBLE PHOSPHOPROTEIN	coord: 1..97
IPR037244	Thylakoid soluble phosphoprotein TSP9 superfamily	SUPERFAMILY	144256	TSP9-like	coord: 20..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G014200.1	Lsi10G014200.1	mRNA