Lsi10G014180 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi10G014180
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description50S ribosomal protein L4
Locationchr10: 18289755 .. 18292454 (-)
RNA-Seq ExpressionLsi10G014180
SyntenyLsi10G014180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGGTATGACTACGGTATTTTCGTGTTTGCCACTGATCTCCAGCGGGAGTGGATAACGAAGCCATCCGCAGAACTCAAAGAGCGCCTCAAAACTCCTCCATCGCACCAACAATGGCGACCTCCACCACGCCATCGTCGCTCTCTTTCTTCACTTCATCGGTCTTCATTTCTTCCCCCAACCACCAAAATTCCAAGCTCTTCTGCAATTGGAAACCTAACTCCCTTAAACCCCAAACCAAACCCTTATCAATCTCCTCCGAGCTTGCTACTCTTCCAGTCCTCTCTTTCACCGGAGAAAAGGTCGGCGAAACCTACCTCGATCTCAAATCCGCTCCACCTGAAACCGCCCGCGCCGTCGTTCACCGAGCCATTATCACCGATCAACAGAACAAGCGCCGTGGGACTGCCTCGACTCTCACCAGAGCTGAGGTTAGTGGAGGCGGCAGAAAACCCTACCAGCAGAAGAAAACCGGGAAGGCTCGTCGCGGTTCGATGCGTACTCCTCTCCGGCCAGGTGGAGGGGTGGTCTTCGGGCCGAAACCTAGAGATTGGTCAATTAAGATCAACAGAAAGGAGAAGAGACTGGCAATATCGACGGCGGTGGCTAGTGCGGCGGTTAATACGATAGTAGTGGAGGATTTTGGGGACAAGTTCGAAAAGCCGAAAACTAAAGAGTTCATCGCGGCATTGAAGAGATGGGGAATCGATCCAAAGGAGAAATCGTTGTTCTTAATGACGGAGGTTTCTGATACTGTGCGGCTATCTAGCCGTAATATCGGTACGTTGAAGTTGTTGACGCCGAGGACGCTGAATTTGTTTGATATTTTGGATTCCGACAAGTTGGTTTTGACGCCGGCGGCAGTAGAATATCTGAATGAGAGATATGGAATTAATTACGAAGAAGAAGAAGAAGAAGGTGGAGAAGACGAAGAAGGTTGATTTTCTTGCCTTTCTCCAATTCAATTATTCAATTAAAGAAATGACAGACTGCTTTAAGAACTTACGTTATCGTTCCATACTCTAATTTTGTCTAATTCAACATTGAAATCACATTACAGTGCCATCTTCTTCTTGAATTCTTGATTTATTCGATACCCTTTTATGACGGGCTGCCTTAGAATTATACTATGAATTCTGGTTCTGGTTCTGTTTGTGTTAACATTTGCATTGTCATTTTGTAAAATCAATTTTATTTCAGATTTCTTACATTTACATTCTTCGTTTTGTTTCATTTCTGTTAGAAATCTTAGAGGAGTAATCGAAATGGAAAGCTAATTCAGGATGGATATTTGACTTTCTTCACCCTAAAACCTATGCTTTTTTAACATTGCTCTTTCTTTCTGCTACTTCCATTTTTTCCCATAAAAGAACAATACAGAAATTGTAGGCTGGCTTGGTAACCCTTTGGTTTTTGAAAATTAAGCCTATAAACATTATTTTCAACTATTAGTTTATATGTTTTGTTATCTAGATTTAGGAGTTTTTTTAAAATCAAAGCAAAATTTTGAAAAACATAAAAAATAGTTTTCAAAAATTAGTTATTGTTTTTTGAAATTGGCTACAAATTCAAAGGAAATATGAAAGCCATTAGTGAGAAAACAAGCACAATTTTTAAAAATAAAAAAATTAAATAGTTACTAAACGGACCGTAATCTTTTCCATTCATATCTTTTCGTTTCTCTTTCCACTGTTTGACATCAAAATGGAGGAGATACGGTATGGATGAACTTTCTCTTTCGTGATGAAACGAAAGAGTCTTGTGGCACGATTGTTTTTCTGCTATTTTATGGGAGTGTAGCTCGAGAGGAATGGTAGAGATTCTAGTCAATGGAAGAAGTTTGGGAGGAGGTGAGGTTTAATGCATCATTACATACGTTCTTTAATCGGACCTTCAATAACTTTCGACTTTGTGCAACTCTTTTGGATTGGAATCCGTTTTCGAAGTTTGTTGTGGACTCATTTTATGGTCTTGTTTTTTGTATGCCCTTCTACGTTAAGCACATACTGAAGTTAATAGAGAGAATTGTAGTTCTTCCATTAACGTCTTCTTCATTTCTGAAAACAGGGGCGGAGGCAGGTGAGGATTCGGATGCAGCAGAATGATTCTGCCATGTCCAAATCATAGAAGAAGCTTTCGGGGGATGTTAACTTTCTTCAGGCTTTGAACGCATTTTTTTCCTTTTTGTTCTTGTACACACGAAAAGGTATTTTCTTGTCCCCTTTTCCTCTGATATCCTAAAGTGTTATTAGCGGATGATATCTTCAAGAATAATCTTTTATTCTTTCGGAACTTGCATTCTGTTATGGCTTCCCTGTACTTTCTTCCCAAGTTAGGAGCTTCCATTATTATTTAGCTTCTCTAATGGCAGTTAATAGCATGTGGAAATGTTCAGAGAGGAAGAGAGAACTAGTTTTAAAAGATCATCTTTTAAATCTTTTGAGTTCCCTGATACGGAGATTGGAATGTAATCAGGATTACTTAAAATCATGGAAATGTTAGAATGCGTGAGAGCAAAATGGAAATGGAATCATGAAGCGTGAAAATAGGTAGAAAAGAGAATTGGGATGAAAACTGTGGGAAAAGAATAAGTTTGGTATTACAAATCAGACCCAAAACGCTCCATCCAAACATGGATTTTAGATTACATTACGACCCAATCTCATTTCAAACTTGATCCTCAAACAGCTCCGGAAAGTT

mRNA sequence

AAAAGGTATGACTACGGTATTTTCGTGTTTGCCACTGATCTCCAGCGGGAGTGGATAACGAAGCCATCCGCAGAACTCAAAGAGCGCCTCAAAACTCCTCCATCGCACCAACAATGGCGACCTCCACCACGCCATCGTCGCTCTCTTTCTTCACTTCATCGGTCTTCATTTCTTCCCCCAACCACCAAAATTCCAAGCTCTTCTGCAATTGGAAACCTAACTCCCTTAAACCCCAAACCAAACCCTTATCAATCTCCTCCGAGCTTGCTACTCTTCCAGTCCTCTCTTTCACCGGAGAAAAGGTCGGCGAAACCTACCTCGATCTCAAATCCGCTCCACCTGAAACCGCCCGCGCCGTCGTTCACCGAGCCATTATCACCGATCAACAGAACAAGCGCCGTGGGACTGCCTCGACTCTCACCAGAGCTGAGGTTAGTGGAGGCGGCAGAAAACCCTACCAGCAGAAGAAAACCGGGAAGGCTCGTCGCGGTTCGATGCGTACTCCTCTCCGGCCAGGTGGAGGGGTGGTCTTCGGGCCGAAACCTAGAGATTGGTCAATTAAGATCAACAGAAAGGAGAAGAGACTGGCAATATCGACGGCGGTGGCTAGTGCGGCGGTTAATACGATAGTAGTGGAGGATTTTGGGGACAAGTTCGAAAAGCCGAAAACTAAAGAGTTCATCGCGGCATTGAAGAGATGGGGAATCGATCCAAAGGAGAAATCGTTGTTCTTAATGACGGAGGTTTCTGATACTGTGCGGCTATCTAGCCGTAATATCGGTACGTTGAAGTTGTTGACGCCGAGGACGCTGAATTTGTTTGATATTTTGGATTCCGACAAGTTGGTTTTGACGCCGGCGGCAGTAGAATATCTGAATGAGAGATATGGAATTAATTACGAAGAAGAAGAAGAAGAAGGTGGAGAAGACGAAGAAGGGGCGGAGGCAGGTGAGGATTCGGATGCAGCAGAATGATTCTGCCATGTCCAAATCATAGAAGAAGCTTTCGGGGGATGTTAACTTTCTTCAGGCTTTGAACGCATTTTTTTCCTTTTTGTTCTTGTACACACGAAAAGGTATTTTCTTGTCCCCTTTTCCTCTGATATCCTAAAGTGTTATTAGCGGATGATATCTTCAAGAATAATCTTTTATTCTTTCGGAACTTGCATTCTGTTATGGCTTCCCTGTACTTTCTTCCCAAGTTAGGAGCTTCCATTATTATTTAGCTTCTCTAATGGCAGTTAATAGCATGTGGAAATGTTCAGAGAGGAAGAGAGAACTAGTTTTAAAAGATCATCTTTTAAATCTTTTGAGTTCCCTGATACGGAGATTGGAATGTAATCAGGATTACTTAAAATCATGGAAATGTTAGAATGCGTGAGAGCAAAATGGAAATGGAATCATGAAGCGTGAAAATAGGTAGAAAAGAGAATTGGGATGAAAACTGTGGGAAAAGAATAAGTTTGGTATTACAAATCAGACCCAAAACGCTCCATCCAAACATGGATTTTAGATTACATTACGACCCAATCTCATTTCAAACTTGATCCTCAAACAGCTCCGGAAAGTT

Coding sequence (CDS)

ATGGCGACCTCCACCACGCCATCGTCGCTCTCTTTCTTCACTTCATCGGTCTTCATTTCTTCCCCCAACCACCAAAATTCCAAGCTCTTCTGCAATTGGAAACCTAACTCCCTTAAACCCCAAACCAAACCCTTATCAATCTCCTCCGAGCTTGCTACTCTTCCAGTCCTCTCTTTCACCGGAGAAAAGGTCGGCGAAACCTACCTCGATCTCAAATCCGCTCCACCTGAAACCGCCCGCGCCGTCGTTCACCGAGCCATTATCACCGATCAACAGAACAAGCGCCGTGGGACTGCCTCGACTCTCACCAGAGCTGAGGTTAGTGGAGGCGGCAGAAAACCCTACCAGCAGAAGAAAACCGGGAAGGCTCGTCGCGGTTCGATGCGTACTCCTCTCCGGCCAGGTGGAGGGGTGGTCTTCGGGCCGAAACCTAGAGATTGGTCAATTAAGATCAACAGAAAGGAGAAGAGACTGGCAATATCGACGGCGGTGGCTAGTGCGGCGGTTAATACGATAGTAGTGGAGGATTTTGGGGACAAGTTCGAAAAGCCGAAAACTAAAGAGTTCATCGCGGCATTGAAGAGATGGGGAATCGATCCAAAGGAGAAATCGTTGTTCTTAATGACGGAGGTTTCTGATACTGTGCGGCTATCTAGCCGTAATATCGGTACGTTGAAGTTGTTGACGCCGAGGACGCTGAATTTGTTTGATATTTTGGATTCCGACAAGTTGGTTTTGACGCCGGCGGCAGTAGAATATCTGAATGAGAGATATGGAATTAATTACGAAGAAGAAGAAGAAGAAGGTGGAGAAGACGAAGAAGGGGCGGAGGCAGGTGAGGATTCGGATGCAGCAGAATGA

Protein sequence

MATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFTGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDILDSDKLVLTPAAVEYLNERYGINYEEEEEEGGEDEEGAEAGEDSDAAE
Homology
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BLAST of Lsi10G014180 vs. ExPASy Swiss-Prot
Match: O50061 (50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL4 PE=2 SV=2)

HSP 1 Score: 365.9 bits (938), Expect = 4.1e-100
Identity = 192/279 (68.82%), Postives = 237/279 (84.95%), Query Frame = 0 

Query: 2   ATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFTG 61
           +++T P+SLSFF+SS+F+SS +HQ  K + +         +KPLS+SS+LATLP+LSF G
Sbjct: 3   SSATAPNSLSFFSSSLFLSS-SHQIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEG 62

Query: 62  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 121
           EKVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG
Sbjct: 63  EKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTG 122

Query: 122 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFG 181
            ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG
Sbjct: 123 HARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFG 182

Query: 182 DKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDI 241
           +KFEKPKTK+F+AA++RWG+DPKEK++FLM +V + V  SSRNIGTL++LTPRTLNLFDI
Sbjct: 183 EKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDI 242

Query: 242 LDSDKLVLTPAAVEYLNERYGINYEEEEEEGGEDEEGAE 278
           L++DKLVLTPAAVE+LN RYG++  EEE++  ++ EG+E
Sbjct: 243 LNADKLVLTPAAVEFLNARYGVDAVEEEDDDEDETEGSE 280

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BLAST of Lsi10G014180 vs. ExPASy Swiss-Prot
Match: O80361 (50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL4 PE=2 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 1.1e-97
Identity = 193/281 (68.68%), Postives = 235/281 (83.63%), Query Frame = 0 

Query: 8   SSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFTGEKVGET 67
           +SLSFF+SS+F+S+PN Q+SK      P  L       +I SE+AT+P+LSF G +VG T
Sbjct: 3   ASLSFFSSSIFLSNPNIQSSKHLLFRSPKQLS-VAAIATIRSEVATIPILSFDGAEVGST 62

Query: 68  YLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTGKARRGS 127
            L+LKSAP +TARAVVHR + TD +N+RRGTASTLTR+EV GGG KPY QKKTG+ARRGS
Sbjct: 63  TLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSEVRGGGIKPYPQKKTGRARRGS 122

Query: 128 MRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKFEKPKTK 187
            RTPLRPGGGVVFGPKP+DWS+KIN+KEKRLAISTA++SA+ NTIVVE+F DKFEKPKTK
Sbjct: 123 NRTPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALSSASENTIVVEEFNDKFEKPKTK 182

Query: 188 EFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDILDSDKLVLT 247
           EFI  ++RWG+DPKEKSLFLMT+VSD V LSSRNIGTLK+LTPRTLNLFDILDS+KLVLT
Sbjct: 183 EFIDLMRRWGLDPKEKSLFLMTDVSDNVILSSRNIGTLKMLTPRTLNLFDILDSEKLVLT 242

Query: 248 PAAVEYLNERYG--INYEEEEEEGGEDEEGAEAGEDSDAAE 287
            +AV++LNERYG    +E+EEE+  ED +G EA E ++++E
Sbjct: 243 KSAVDFLNERYGDENEWEDEEEDDQEDNDGGEAEESTESSE 282

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BLAST of Lsi10G014180 vs. ExPASy Swiss-Prot
Match: O49937 (50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL4 PE=1 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.7e-90
Identity = 181/292 (61.99%), Postives = 227/292 (77.74%), Query Frame = 0 

Query: 1   MATSTTPS-SLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSF 60
           MATST+ S SLSFF+SS+F S   + +SK       +S    +  LSI SEL  LP+L+F
Sbjct: 1   MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF 60

Query: 61  TGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKK 120
           +GEKVGET+L+LK+APPE ARAVVHR +IT  QNKRRGTASTLTRAEV GGGRKPY QKK
Sbjct: 61  SGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK 120

Query: 121 TGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGD 180
           TG+ARRGS  +PLRPGGGV+FGPKPRDW+IK+N+KE+RLA+STA+ASA  N+ VVE+F +
Sbjct: 121 TGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAE 180

Query: 181 KFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDIL 240
            FEKPKTK+FIAA++RWG+DP EKSLF + ++ + V  S RNI TLKLLTPR+LNLFD+L
Sbjct: 181 NFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL 240

Query: 241 DSDKLVLTPAAVEYLNERYGIN-------YEEEEEEGGEDEEGAEAGEDSDA 285
           +++KLV T   ++YLN+RYG++        EEEEEEG E ++G E G    A
Sbjct: 241 NAEKLVFTEGTIQYLNQRYGVDTLEDEDEEEEEEEEGEEVDDGVEDGTPEPA 292

[Close]
BLAST of Lsi10G014180 vs. ExPASy Swiss-Prot
Match: Q8DMN0 (50S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rplD PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.6e-56
Identity = 111/204 (54.41%), Postives = 149/204 (73.04%), Query Frame = 0 

Query: 56  VLSFTGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPY 115
           V  + G   GE  LDL +A PETA  +VHRA++    N R+GT ST TRAEV GGGRKP+
Sbjct: 6   VKDWQGADSGEATLDLATAKPETASHIVHRALVRQLANARQGTVSTKTRAEVRGGGRKPW 65

Query: 116 QQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE 175
           +QK TG+AR GS+R+PL  GGGV+FGPKPRD+S K+NRKE+RLA+ TA+ S   + IVV+
Sbjct: 66  RQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRLALRTALMSRVEDLIVVQ 125

Query: 176 DFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNL 235
           DF D   +PKTKE + AL+RWGI+P++K L L  ++++TV LS+RN+ TLKLL    LN+
Sbjct: 126 DFADHLPRPKTKELVTALQRWGIEPEQKVLLLAADITETVALSARNVPTLKLLRADQLNV 185

Query: 236 FDILDSDKLVLTPAAVEYLNERYG 260
           FD+L +D++V T  A+  + E YG
Sbjct: 186 FDLLYADRIVATTGAIAKIQEVYG 209

[Close]
BLAST of Lsi10G014180 vs. ExPASy Swiss-Prot
Match: B8HMQ5 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rplD PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 8.9e-55
Identity = 109/204 (53.43%), Postives = 148/204 (72.55%), Query Frame = 0 

Query: 56  VLSFTGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPY 115
           +  + G +VGET L+L+ A  E A  +VHRA+     N R+GTAST TRAEV GGGRKP+
Sbjct: 6   IKDWQGSEVGETALELRVAKAENAAHIVHRALRRQMANARQGTASTKTRAEVRGGGRKPW 65

Query: 116 QQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE 175
           +QK TG+AR GS R+PL  GGGV+FGPKPRD+SIK+N KE+RLA+ TA+ S + + IVVE
Sbjct: 66  RQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSIKMNYKERRLALRTALISRSDSLIVVE 125

Query: 176 DFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNL 235
           DF DK  +PKTKE  AA+ RWG+ P +K L ++ +  DT+ LS+RNI T+KL+   +LN+
Sbjct: 126 DFSDKLPRPKTKELAAAIARWGVQPNDKVLLIVADKQDTIYLSARNIATVKLIQATSLNV 185

Query: 236 FDILDSDKLVLTPAAVEYLNERYG 260
           FD+L++D +V T  A+  + E YG
Sbjct: 186 FDLLNADWIVATVEALGKIQEVYG 209

[Close]
BLAST of Lsi10G014180 vs. ExPASy TrEMBL
Match: A0A6J1D3V7 (50S ribosomal protein L4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111017027 PE=3 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 1.3e-138
Identity = 271/296 (91.55%), Postives = 279/296 (94.26%), Query Frame = 0 

Query: 1   MATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFT 60
           MATSTTPSSLSFFTSSVF+SS N QNSKLFC+WKPNSLKPQTKPLSISS+LATLPVLSF 
Sbjct: 1   MATSTTPSSLSFFTSSVFLSSAN-QNSKLFCHWKPNSLKPQTKPLSISSQLATLPVLSFA 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSD VRLSSRNIGTLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 241 SDKLVLTPAAVEYLNERYGINY----------EEEEEEGGEDEEGAEAGEDSDAAE 287
           SDK+VLTPAAV+YLNERYGINY          EEEE++G E EEG EAGEDSDAAE
Sbjct: 241 SDKMVLTPAAVDYLNERYGINYEGGIEDDEEEEEEEQQGEEGEEGLEAGEDSDAAE 295

[Close]
BLAST of Lsi10G014180 vs. ExPASy TrEMBL
Match: A0A1S3CM35 (50S ribosomal protein L4, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502034 PE=3 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 2.3e-138
Identity = 270/291 (92.78%), Postives = 276/291 (94.85%), Query Frame = 0 

Query: 1   MATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFT 60
           MA ST+PSSLSFFTSSVF+SSP HQN  LF N KPNSLKPQTKPLSISSELATLPVLSFT
Sbjct: 1   MAASTSPSSLSFFTSSVFLSSPKHQNPNLFFNCKPNSLKPQTKPLSISSELATLPVLSFT 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE+FGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEEFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSD VRLSSRNIGTLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 241 SDKLVLTPAAVEYLNERYGINY-----EEEEEEGGEDEEGAEAGEDSDAAE 287
           SDKLVLTPAAV+YLNERYGINY     EEEEEE  E+EEG EAGEDSDAAE
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEEEEEEEEEEEEEGVEAGEDSDAAE 291

[Close]
BLAST of Lsi10G014180 vs. ExPASy TrEMBL
Match: A0A1S3CL27 (50S ribosomal protein L4, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502034 PE=3 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 1.1e-137
Identity = 270/297 (90.91%), Postives = 276/297 (92.93%), Query Frame = 0 

Query: 1   MATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFT 60
           MA ST+PSSLSFFTSSVF+SSP HQN  LF N KPNSLKPQTKPLSISSELATLPVLSFT
Sbjct: 1   MAASTSPSSLSFFTSSVFLSSPKHQNPNLFFNCKPNSLKPQTKPLSISSELATLPVLSFT 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE+FGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEEFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSD VRLSSRNIGTLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 241 SDKLVLTPAAVEYLNERYGINY-----------EEEEEEGGEDEEGAEAGEDSDAAE 287
           SDKLVLTPAAV+YLNERYGINY           EEEEEE  E+EEG EAGEDSDAAE
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEEEEEEEEEEEEEEEEEEEGVEAGEDSDAAE 297

[Close]
BLAST of Lsi10G014180 vs. ExPASy TrEMBL
Match: A0A6J1L3A5 (50S ribosomal protein L4, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111500015 PE=3 SV=1)

HSP 1 Score: 490.3 bits (1261), Expect = 5.3e-135
Identity = 266/292 (91.10%), Postives = 273/292 (93.49%), Query Frame = 0 

Query: 1   MATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFT 60
           MA STTPSSLSFF+SS+F+SS N QNSKLFCNWKPNS KPQ+KPLSISS+LATLPVLSFT
Sbjct: 1   MAASTTPSSLSFFSSSIFLSSAN-QNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFT 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEV GGGRKPYQQKKT
Sbjct: 61  GEKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVRGGGRKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSD VRLSSRNIGTLKLLTPRTLNLFDIL+
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILN 240

Query: 241 SDKLVLTPAAVEYLNERYGINY------EEEEEEGGEDEEGAEAGEDSDAAE 287
           SDKLVLTPAAV+YLNERYGINY      EEEEEE  E EEG E GED DAAE
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEDEEEEEEELEGEEGLETGEDLDAAE 291

[Close]
BLAST of Lsi10G014180 vs. ExPASy TrEMBL
Match: A0A6J1G917 (50S ribosomal protein L4, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451819 PE=3 SV=1)

HSP 1 Score: 490.3 bits (1261), Expect = 5.3e-135
Identity = 266/293 (90.78%), Postives = 274/293 (93.52%), Query Frame = 0 

Query: 1   MATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFT 60
           MA ST PSSLSFF+SS+F+SS N QNSKLFCNWKPNS KPQ+KPLSISS+LATLPVLSFT
Sbjct: 1   MAASTAPSSLSFFSSSIFLSSAN-QNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFT 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT
Sbjct: 61  GEKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSD VRLSSRNIGTLKLLTPRTLNLFDIL+
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILN 240

Query: 241 SDKLVLTPAAVEYLNERYGINY-------EEEEEEGGEDEEGAEAGEDSDAAE 287
           SDKLVLTPAAV+YLNERYGINY       EEEEEE  E EEG +AGED DAAE
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEDEEEEEEEELEGEEGLDAGEDLDAAE 292

[Close]
BLAST of Lsi10G014180 vs. NCBI nr
Match: XP_038902816.1 (50S ribosomal protein L4, chloroplastic [Benincasa hispida])

HSP 1 Score: 526.2 bits (1354), Expect = 1.8e-145
Identity = 280/287 (97.56%), Postives = 282/287 (98.26%), Query Frame = 0 

Query: 1   MATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFT 60
           MATST+PSSLSFFTSSVF+SSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFT
Sbjct: 1   MATSTSPSSLSFFTSSVFLSSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFT 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGETYLDLKSAP ETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPQETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSD VRLSSRNIGTLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 241 SDKLVLTPAAVEYLNERYGINYEE-EEEEGGEDEEGAEAGEDSDAAE 287
           SDKLVLTPAAVEYLNERYGINYEE EEEEGG DEEG EAGEDSDAAE
Sbjct: 241 SDKLVLTPAAVEYLNERYGINYEEAEEEEGGADEEGPEAGEDSDAAE 287

[Close]
BLAST of Lsi10G014180 vs. NCBI nr
Match: XP_022148353.1 (50S ribosomal protein L4, chloroplastic [Momordica charantia])

HSP 1 Score: 502.3 bits (1292), Expect = 2.8e-138
Identity = 271/296 (91.55%), Postives = 279/296 (94.26%), Query Frame = 0 

Query: 1   MATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFT 60
           MATSTTPSSLSFFTSSVF+SS N QNSKLFC+WKPNSLKPQTKPLSISS+LATLPVLSF 
Sbjct: 1   MATSTTPSSLSFFTSSVFLSSAN-QNSKLFCHWKPNSLKPQTKPLSISSQLATLPVLSFA 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSD VRLSSRNIGTLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 241 SDKLVLTPAAVEYLNERYGINY----------EEEEEEGGEDEEGAEAGEDSDAAE 287
           SDK+VLTPAAV+YLNERYGINY          EEEE++G E EEG EAGEDSDAAE
Sbjct: 241 SDKMVLTPAAVDYLNERYGINYEGGIEDDEEEEEEEQQGEEGEEGLEAGEDSDAAE 295

[Close]
BLAST of Lsi10G014180 vs. NCBI nr
Match: XP_008464054.1 (PREDICTED: 50S ribosomal protein L4, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 501.5 bits (1290), Expect = 4.8e-138
Identity = 270/291 (92.78%), Postives = 276/291 (94.85%), Query Frame = 0 

Query: 1   MATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFT 60
           MA ST+PSSLSFFTSSVF+SSP HQN  LF N KPNSLKPQTKPLSISSELATLPVLSFT
Sbjct: 1   MAASTSPSSLSFFTSSVFLSSPKHQNPNLFFNCKPNSLKPQTKPLSISSELATLPVLSFT 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE+FGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEEFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSD VRLSSRNIGTLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 241 SDKLVLTPAAVEYLNERYGINY-----EEEEEEGGEDEEGAEAGEDSDAAE 287
           SDKLVLTPAAV+YLNERYGINY     EEEEEE  E+EEG EAGEDSDAAE
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEEEEEEEEEEEEEGVEAGEDSDAAE 291

[Close]
BLAST of Lsi10G014180 vs. NCBI nr
Match: XP_008464053.1 (PREDICTED: 50S ribosomal protein L4, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 499.2 bits (1284), Expect = 2.4e-137
Identity = 270/297 (90.91%), Postives = 276/297 (92.93%), Query Frame = 0 

Query: 1   MATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFT 60
           MA ST+PSSLSFFTSSVF+SSP HQN  LF N KPNSLKPQTKPLSISSELATLPVLSFT
Sbjct: 1   MAASTSPSSLSFFTSSVFLSSPKHQNPNLFFNCKPNSLKPQTKPLSISSELATLPVLSFT 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE+FGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEEFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSD VRLSSRNIGTLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 241 SDKLVLTPAAVEYLNERYGINY-----------EEEEEEGGEDEEGAEAGEDSDAAE 287
           SDKLVLTPAAV+YLNERYGINY           EEEEEE  E+EEG EAGEDSDAAE
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEEEEEEEEEEEEEEEEEEEGVEAGEDSDAAE 297

[Close]
BLAST of Lsi10G014180 vs. NCBI nr
Match: XP_023532270.1 (50S ribosomal protein L4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 491.9 bits (1265), Expect = 3.8e-135
Identity = 267/293 (91.13%), Postives = 275/293 (93.86%), Query Frame = 0 

Query: 1   MATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFT 60
           MA STTPSSLSFF+SS+F+SS N QNSKLFCNWKPNS KPQ+KPLSISS+LATLPVLSFT
Sbjct: 1   MAASTTPSSLSFFSSSIFLSSAN-QNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFT 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT
Sbjct: 61  GEKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSD VRLSSRNIGTLKLLTPRTLNLFDIL+
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILN 240

Query: 241 SDKLVLTPAAVEYLNERYGINY-------EEEEEEGGEDEEGAEAGEDSDAAE 287
           SDKLVLTPAAV+YLNERYGINY       EEEEEE  E EEG EAGE+ DAAE
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEDEEEEEEEELEGEEGLEAGEELDAAE 292

[Close]
BLAST of Lsi10G014180 vs. TAIR 10
Match: AT1G07320.1 (ribosomal protein L4 )

HSP 1 Score: 365.9 bits (938), Expect = 2.9e-101
Identity = 192/279 (68.82%), Postives = 237/279 (84.95%), Query Frame = 0 

Query: 2   ATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFTG 61
           +++T P+SLSFF+SS+F+SS +HQ  K + +         +KPLS+SS+LATLP+LSF G
Sbjct: 3   SSATAPNSLSFFSSSLFLSS-SHQIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEG 62

Query: 62  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 121
           EKVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG
Sbjct: 63  EKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTG 122

Query: 122 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFG 181
            ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG
Sbjct: 123 HARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFG 182

Query: 182 DKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDI 241
           +KFEKPKTK+F+AA++RWG+DPKEK++FLM +V + V  SSRNIGTL++LTPRTLNLFDI
Sbjct: 183 EKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDI 242

Query: 242 LDSDKLVLTPAAVEYLNERYGINYEEEEEEGGEDEEGAE 278
           L++DKLVLTPAAVE+LN RYG++  EEE++  ++ EG+E
Sbjct: 243 LNADKLVLTPAAVEFLNARYGVDAVEEEDDDEDETEGSE 280

[Close]
BLAST of Lsi10G014180 vs. TAIR 10
Match: AT1G07320.3 (ribosomal protein L4 )

HSP 1 Score: 364.4 bits (934), Expect = 8.4e-101
Identity = 191/277 (68.95%), Postives = 235/277 (84.84%), Query Frame = 0 

Query: 2   ATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFTG 61
           +++T P+SLSFF+SS+F+SS +HQ  K + +         +KPLS+SS+LATLP+LSF G
Sbjct: 3   SSATAPNSLSFFSSSLFLSS-SHQIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEG 62

Query: 62  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 121
           EKVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG
Sbjct: 63  EKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTG 122

Query: 122 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFG 181
            ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG
Sbjct: 123 HARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFG 182

Query: 182 DKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDI 241
           +KFEKPKTK+F+AA++RWG+DPKEK++FLM +V + V  SSRNIGTL++LTPRTLNLFDI
Sbjct: 183 EKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDI 242

Query: 242 LDSDKLVLTPAAVEYLNERYGINYEEEEEEGGEDEEG 276
           L++DKLVLTPAAVE+LN RYG++  EEE++  ++ EG
Sbjct: 243 LNADKLVLTPAAVEFLNARYGVDAVEEEDDDEDETEG 278

[Close]
BLAST of Lsi10G014180 vs. TAIR 10
Match: AT1G07320.4 (ribosomal protein L4 )

HSP 1 Score: 364.4 bits (934), Expect = 8.4e-101
Identity = 191/277 (68.95%), Postives = 235/277 (84.84%), Query Frame = 0 

Query: 2   ATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFTG 61
           +++T P+SLSFF+SS+F+SS +HQ  K + +         +KPLS+SS+LATLP+LSF G
Sbjct: 3   SSATAPNSLSFFSSSLFLSS-SHQIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEG 62

Query: 62  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 121
           EKVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG
Sbjct: 63  EKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTG 122

Query: 122 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFG 181
            ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG
Sbjct: 123 HARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFG 182

Query: 182 DKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDI 241
           +KFEKPKTK+F+AA++RWG+DPKEK++FLM +V + V  SSRNIGTL++LTPRTLNLFDI
Sbjct: 183 EKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDI 242

Query: 242 LDSDKLVLTPAAVEYLNERYGINYEEEEEEGGEDEEG 276
           L++DKLVLTPAAVE+LN RYG++  EEE++  ++ EG
Sbjct: 243 LNADKLVLTPAAVEFLNARYGVDAVEEEDDDEDETEG 278

[Close]
BLAST of Lsi10G014180 vs. TAIR 10
Match: AT1G07320.2 (ribosomal protein L4 )

HSP 1 Score: 362.8 bits (930), Expect = 2.5e-100
Identity = 194/280 (69.29%), Postives = 236/280 (84.29%), Query Frame = 0 

Query: 2   ATSTTPSSLSFFTSSVFISSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFTG 61
           +++T P+SLSFF+SS+F+SS +HQ  K + +         +KPLS+SS+LATLP+LSF G
Sbjct: 3   SSATAPNSLSFFSSSLFLSS-SHQIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEG 62

Query: 62  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 121
           EKVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG
Sbjct: 63  EKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTG 122

Query: 122 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFG 181
            ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG
Sbjct: 123 HARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFG 182

Query: 182 DKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPRTLNLFDI 241
           +KFEKPKTK+F+AA++RWG+DPKEK++FLM +V + V  SSRNIGTL++LTPRTLNLFDI
Sbjct: 183 EKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDI 242

Query: 242 LDSDKLVLTPAAVEYLNERYGINYEEEEEEGGEDEEGAEA 279
           L++DKLVLTPAAVE+LN RYG++  EEE++  EDE   EA
Sbjct: 243 LNADKLVLTPAAVEFLNARYGVDAVEEEDD-DEDETEEEA 280

[Close]
BLAST of Lsi10G014180 vs. TAIR 10
Match: AT2G20060.1 (Ribosomal protein L4/L1 family )

HSP 1 Score: 93.2 bits (230), Expect = 3.6e-19
Identity = 63/206 (30.58%), Postives = 111/206 (53.88%), Query Frame = 0 

Query: 54  LPVLSFTGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRK 113
           +PV +F  E+ G   L          + ++H  +      +++GT ST T +EVSG GRK
Sbjct: 91  IPVTNFQNEEKGFMVLAGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRK 150

Query: 114 PYQQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV--NT 173
           P+ QK TG+AR G++R P   GG V+ GPKPR  +IK+N++ +RL +  A+ + A     
Sbjct: 151 PWNQKGTGRARHGTLRGPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKL 210

Query: 174 IVVEDFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDTVRLSSRNIGTLKLLTPR 233
           +V +D G      KTK  +    +   + K+  +     + + ++L+++N+  + ++   
Sbjct: 211 LVFDDLG--LPTHKTKNIVNYYNQME-NTKKVLVVEGGPIDEKLKLATQNLHYVNIIPSI 270

Query: 234 TLNLFDILDSDKLVLTPAAVEYLNER 258
            LN++ IL  D L+++  AV  + ER
Sbjct: 271 GLNVYSILLHDTLLMSRDAVNKIVER 293

The following BLAST results are available for this feature:
BLAST of Lsi10G014180 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O500614.1e-10068.8250S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL4 ... [more]
O803611.1e-9768.6850S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL4 PE=... [more]
O499371.7e-9061.9950S ribosomal protein L4, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL4 PE=... [more]
Q8DMN01.6e-5654.4150S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) OX=19722... [more]
B8HMQ58.9e-5553.4350S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395... [more]
BLAST of Lsi10G014180 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D3V71.3e-13891.5550S ribosomal protein L4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A1S3CM352.3e-13892.7850S ribosomal protein L4, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LO... [more]
A0A1S3CL271.1e-13790.9150S ribosomal protein L4, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LO... [more]
A0A6J1L3A55.3e-13591.1050S ribosomal protein L4, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3... [more]
A0A6J1G9175.3e-13590.7850S ribosomal protein L4, chloroplastic-like isoform X1 OS=Cucurbita moschata OX... [more]
BLAST of Lsi10G014180 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038902816.11.8e-14597.5650S ribosomal protein L4, chloroplastic [Benincasa hispida][more]
XP_022148353.12.8e-13891.5550S ribosomal protein L4, chloroplastic [Momordica charantia][more]
XP_008464054.14.8e-13892.78PREDICTED: 50S ribosomal protein L4, chloroplastic isoform X2 [Cucumis melo][more]
XP_008464053.12.4e-13790.91PREDICTED: 50S ribosomal protein L4, chloroplastic isoform X1 [Cucumis melo][more]
XP_023532270.13.8e-13591.1350S ribosomal protein L4, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
BLAST of Lsi10G014180 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G07320.12.9e-10168.82ribosomal protein L4 [more]
AT1G07320.38.4e-10168.95ribosomal protein L4 [more]
AT1G07320.48.4e-10168.95ribosomal protein L4 [more]
AT1G07320.22.5e-10069.29ribosomal protein L4 [more]
AT2G20060.13.6e-1930.58Ribosomal protein L4/L1 family [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023574Ribosomal protein L4 domain superfamilyGENE3D3.40.1370.10coord: 38..268
e-value: 1.1E-60
score: 206.7
IPR023574Ribosomal protein L4 domain superfamilySUPERFAMILY52166Ribosomal protein L4coord: 53..259
IPR002136Ribosomal protein L4/L1ePFAMPF00573Ribosomal_L4coord: 78..257
e-value: 2.0E-53
score: 181.0
IPR01300550S ribosomal protein uL4TIGRFAMTIGR03953TIGR03953coord: 77..256
e-value: 3.0E-57
score: 191.0
IPR01300550S ribosomal protein uL4PANTHERPTHR1074650S RIBOSOMAL PROTEIN L4coord: 2..274
IPR01300550S ribosomal protein uL4HAMAPMF_01328_BRibosomal_L4_Bcoord: 59..259
score: 29.388346
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 258..286
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 261..286
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..139

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G014180.1Lsi10G014180.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome