Lsi10G013850 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G013850
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	flowering-promoting factor 1-like
Location	chr10: 17965426 .. 17965815 (-)
RNA-Seq Expression	Lsi10G013850
Synteny	Lsi10G013850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGGTGTTTGGGTGTTCGACAAAAATGGCGTGGCTCGTTTAATATCGAACCCAACCAGGGAGTCCTTCGAGTGCAAGGACCCACCCCAGCCAGGCACCGCCACCGCGCCAGGGGCTCGTCCCAGAGTCCTGGTCTATCTTCCAACCAACCAAGTGATCCGGTCCTACGCCGAACTGGAACAGCGGCTCGGCGAACTCGGGTGGAGCCGGTACCGGAATTTAGCCGAACCGGAGCTCCTCCAGTTCCACCGCTCTCATGACTCGGCTCACTTGATTTCTCTCCCCAAAAACTTCGCCAAATTCAAACCCATGCATATGTACGACATTGTCGTCAAAAATCGCCAGTTCTTCCAAGTTCGAGATGCCACGTCATCACAATCTTCTTAG

mRNA sequence

ATGTCCGGTGTTTGGGTGTTCGACAAAAATGGCGTGGCTCGTTTAATATCGAACCCAACCAGGGAGTCCTTCGAGTGCAAGGACCCACCCCAGCCAGGCACCGCCACCGCGCCAGGGGCTCGTCCCAGAGTCCTGGTCTATCTTCCAACCAACCAAGTGATCCGGTCCTACGCCGAACTGGAACAGCGGCTCGGCGAACTCGGGTGGAGCCGGTACCGGAATTTAGCCGAACCGGAGCTCCTCCAGTTCCACCGCTCTCATGACTCGGCTCACTTGATTTCTCTCCCCAAAAACTTCGCCAAATTCAAACCCATGCATATGTACGACATTGTCGTCAAAAATCGCCAGTTCTTCCAAGTTCGAGATGCCACGTCATCACAATCTTCTTAG

Coding sequence (CDS)

ATGTCCGGTGTTTGGGTGTTCGACAAAAATGGCGTGGCTCGTTTAATATCGAACCCAACCAGGGAGTCCTTCGAGTGCAAGGACCCACCCCAGCCAGGCACCGCCACCGCGCCAGGGGCTCGTCCCAGAGTCCTGGTCTATCTTCCAACCAACCAAGTGATCCGGTCCTACGCCGAACTGGAACAGCGGCTCGGCGAACTCGGGTGGAGCCGGTACCGGAATTTAGCCGAACCGGAGCTCCTCCAGTTCCACCGCTCTCATGACTCGGCTCACTTGATTTCTCTCCCCAAAAACTTCGCCAAATTCAAACCCATGCATATGTACGACATTGTCGTCAAAAATCGCCAGTTCTTCCAAGTTCGAGATGCCACGTCATCACAATCTTCTTAG

Protein sequence

MSGVWVFDKNGVARLISNPTRESFECKDPPQPGTATAPGARPRVLVYLPTNQVIRSYAELEQRLGELGWSRYRNLAEPELLQFHRSHDSAHLISLPKNFAKFKPMHMYDIVVKNRQFFQVRDATSSQSS

Homology

[Close]

BLAST of Lsi10G013850 vs. ExPASy Swiss-Prot
Match: Q0E1D7 (Flowering-promoting factor 1-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0460200 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 9.7e-25
Identity = 63/126 (50.00%), Postives = 85/126 (67.46%), Query Frame = 0


Query: 1   MSGVWVFDKNGVARLISNP-TRESFECKDPPQPGTATAPGARPRVLVYLPTNQVIRSYAE 60
           M+GVWVF K+G+ R + NP + ES    D          G R +VLV++P+ +V+ SY  
Sbjct: 1   MAGVWVF-KDGIVRRVENPGSEESSSAGD-------GGGGGRRKVLVHVPSGEVVASYEV 60

Query: 61  LEQRLGELGWSRYRNLAEPELLQFHRSHDSAHLISLPKNFAKFKPMHMYDIVVKNRQFFQ 120
           LE+RL ELGW RY  L +P LLQFH+   + HLIS+P++F+KFK +HMYDIVVK R  F+
Sbjct: 61  LERRLRELGWERY--LTDPCLLQFHQ-RSTVHLISVPRDFSKFKLVHMYDIVVKTRNVFE 115

Query: 121 VRDATS 126
           VRDA +
Sbjct: 121 VRDAAA 115

[Close]

BLAST of Lsi10G013850 vs. ExPASy Swiss-Prot
Match: O24340 (Flowering-promoting factor 1 OS=Sinapis alba OX=3728 GN=FPF1 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.6e-24
Identity = 65/123 (52.85%), Postives = 79/123 (64.23%), Query Frame = 0


Query: 1   MSGVWVFDKNGVARLISNPTRESFECKDPPQPGTATAPGARPRVLVYLPTNQVIRSYAEL 60
           MSGVWVF KNGV RL+ NP           Q G  T   +R +V+VYLPT +VI SY+ L
Sbjct: 1   MSGVWVF-KNGVIRLVENPN----------QSGGDT--NSRRKVMVYLPTGEVISSYSTL 60

Query: 61  EQRLGELGWSRYRNLAEPELLQFHRSHDSAHLISLPKNFAKFKPMHMYDIVVKNRQFFQV 120
           EQ L  LGW RY    + +LLQFH+   S  LISLPK+F KF  ++MYDIVVKN  +F V
Sbjct: 61  EQILRSLGWERYFGGGDTDLLQFHK-RSSIDLISLPKDFTKFSSVYMYDIVVKNPNYFHV 109

Query: 121 RDA 124
           RD+
Sbjct: 121 RDS 109

[Close]

BLAST of Lsi10G013850 vs. ExPASy Swiss-Prot
Match: O23624 (Flowering-promoting factor 1 OS=Arabidopsis thaliana OX=3702 GN=FPF1 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.2e-24
Identity = 60/123 (48.78%), Postives = 79/123 (64.23%), Query Frame = 0


Query: 1   MSGVWVFDKNGVARLISNPTRESFECKDPPQPGTATAPGARPRVLVYLPTNQVIRSYAEL 60
           MSGVWVF KNGV RL+ NP +   + ++            R +V+VYLPT +V+ SY+ L
Sbjct: 1   MSGVWVF-KNGVIRLVENPNQSGSDTQN------------RRKVMVYLPTGEVVSSYSTL 60

Query: 61  EQRLGELGWSRYRNLAEPELLQFHRSHDSAHLISLPKNFAKFKPMHMYDIVVKNRQFFQV 120
           EQ L  LGW RY    + +LLQFH+   S  LISLP++F KF  ++MYDIVVKN  +F V
Sbjct: 61  EQILQSLGWERYFGGGDTDLLQFHK-RSSIDLISLPRDFTKFNSVYMYDIVVKNPNYFHV 109

Query: 121 RDA 124
           RD+
Sbjct: 121 RDS 109

[Close]

BLAST of Lsi10G013850 vs. ExPASy Swiss-Prot
Match: Q5Q0B3 (Flowering-promoting factor 1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLP1 PE=2 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-23
Identity = 60/124 (48.39%), Postives = 80/124 (64.52%), Query Frame = 0


Query: 1   MSGVWVFDKNGVARLISNPTRESF-ECKDPPQPGTATAPGARPRVLVYLPTNQVIRSYAE 60
           MSGVWVF+KNGV RL+ NP  +S  +  +    G       R ++LV+LP+++V+ SY  
Sbjct: 1   MSGVWVFNKNGVMRLVENPYNQSAGDSSESSSSGGNQQQRMRRKILVHLPSSEVVSSYGS 60

Query: 61  LEQRLGELGWSRYRNLAEPE-LLQFHRSHDSAHLISLPKNFAKFKPMHMYDIVVKNRQFF 120
           LE+ L  LGW RY +    + LLQFH+   S  LISLP++F+KF  +HMYDIVVKN   F
Sbjct: 61  LEKILKNLGWERYYSGDNTDHLLQFHK-RTSIDLISLPRDFSKFNSIHMYDIVVKNPNVF 120

Query: 121 QVRD 123
            VRD
Sbjct: 121 HVRD 123

[Close]

BLAST of Lsi10G013850 vs. ExPASy Swiss-Prot
Match: Q9LXB5 (Flowering-promoting factor 1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLP2 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-22
Identity = 59/122 (48.36%), Postives = 77/122 (63.11%), Query Frame = 0


Query: 1   MSGVWVFDKNGVARLISNPTRESFECKDPPQPGTATAPGARPRVLVYLPTNQVIRSYAEL 60
           MSGVWVF+ NGV RL+ NP +           G +T    R  VLVYLPT + + SY+ L
Sbjct: 1   MSGVWVFN-NGVIRLVENPNQSG---------GVSTQSHGRRNVLVYLPTGEAVSSYSSL 60

Query: 61  EQRLGELGWSRYRNLAEPELLQFHRSHDSAHLISLPKNFAKFKPMHMYDIVVKNRQFFQV 120
           EQ L  LGW RY +  + +L+Q+H+   S  LISLP++F+KF  ++MYDIVVKN   F V
Sbjct: 61  EQILRSLGWERYFS-GDSDLIQYHK-RSSIDLISLPRDFSKFNSVYMYDIVVKNPNSFHV 110

Query: 121 RD 123
           RD
Sbjct: 121 RD 110

[Close]

BLAST of Lsi10G013850 vs. ExPASy TrEMBL
Match: A0A0A0KE84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190350 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.1e-62
Identity = 119/129 (92.25%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 1   MSGVWVFDKNGVARLISNPTRESFECKDPPQPGTATAPGARPRVLVYLPTNQVIRSYAEL 60
           MSGVWVFDKNGVARLISNPTRESFECKDPP PGTATAPGARPRVLVYLPTNQVIRSYAEL
Sbjct: 1   MSGVWVFDKNGVARLISNPTRESFECKDPPHPGTATAPGARPRVLVYLPTNQVIRSYAEL 60

Query: 61  EQRLGELGWSRYRNLAEPELLQFHRSHDSAHLISLPKNFAKFKPMHMYDIVVKNRQFFQV 120
           EQRL ELGW+RY NLAEP+LLQFHRSHDSAHLISLPK+FAKFKPMHMYDIVVKNR FFQV
Sbjct: 61  EQRLAELGWTRYPNLAEPDLLQFHRSHDSAHLISLPKSFAKFKPMHMYDIVVKNRHFFQV 120

Query: 121 RDATSSQSS 130
           RD TSS +S
Sbjct: 121 RDPTSSPTS 129

[Close]

BLAST of Lsi10G013850 vs. ExPASy TrEMBL
Match: A0A6J1D405 (flowering-promoting factor 1-like OS=Momordica charantia OX=3673 GN=LOC111017063 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.2e-54
Identity = 112/131 (85.50%), Postives = 119/131 (90.84%), Query Frame = 0


Query: 1   MSGVWVFDKNGVARLISNPTRESFECKDPPQPGTATAPGARPRVLVYLPTNQVIRSYAEL 60
           MSGVWVFDKNGVARLI+NPTRESFE KDPP PGTATAPGARPRVLVYLP NQVI SYAEL
Sbjct: 1   MSGVWVFDKNGVARLIANPTRESFEGKDPPYPGTATAPGARPRVLVYLPANQVIGSYAEL 60

Query: 61  EQRLGELGWSRYRN-LAEP-ELLQFHRSHDSAHLISLPKNFAKFKPMHMYDIVVKNRQFF 120
           EQRLGELGW+RYRN  AEP EL++FHRSHDSA LISLPK+FAKFKPMHMYDIVVKNR FF
Sbjct: 61  EQRLGELGWTRYRNSSAEPEELVRFHRSHDSADLISLPKSFAKFKPMHMYDIVVKNRHFF 120

Query: 121 QVRDATSSQSS 130
           QVRD  S+ +S
Sbjct: 121 QVRDPKSAAAS 131

[Close]

BLAST of Lsi10G013850 vs. ExPASy TrEMBL
Match: A0A1R3HBS3 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_20321 PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.3e-52
Identity = 100/122 (81.97%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 1   MSGVWVFDKNGVARLISNPTRESFECKDPPQPGTATAPGARPRVLVYLPTNQVIRSYAEL 60
           MSGVW+FDK GVARLISNPTRESFE KDP  PGT+TAPGARPRVLVYLPTNQVIRSY+EL
Sbjct: 1   MSGVWIFDKKGVARLISNPTRESFEQKDPIYPGTSTAPGARPRVLVYLPTNQVIRSYSEL 60

Query: 61  EQRLGELGWSRYRNLAEPELLQFHRSHDSAHLISLPKNFAKFKPMHMYDIVVKNRQFFQV 120
           EQRLGELGW+RY NL++PELLQFH+S++S HLISLP+NFA F+ +HMYDIVVKNR FF+V
Sbjct: 61  EQRLGELGWTRYYNLSQPELLQFHKSNNSVHLISLPRNFANFRSLHMYDIVVKNRSFFEV 120

Query: 121 RD 123
           RD
Sbjct: 121 RD 122

[Close]

BLAST of Lsi10G013850 vs. ExPASy TrEMBL
Match: A0A5N5LE78 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_013792 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.1e-51
Identity = 99/126 (78.57%), Postives = 110/126 (87.30%), Query Frame = 0


Query: 1   MSGVWVFDKNGVARLISNPTRESFECKDPPQPGTATAPGARPRVLVYLPTNQVIRSYAEL 60
           MSGVW+FDKNGV RL++NPTRESFE K+PP+PGTATAPGARPRVLVYLP N VIRSY EL
Sbjct: 245 MSGVWIFDKNGVTRLVTNPTRESFEQKEPPRPGTATAPGARPRVLVYLPANHVIRSYTEL 304

Query: 61  EQRLGELGWSRYRNLAEPELLQFHRSHDSAHLISLPKNFAKFKPMHMYDIVVKNRQFFQV 120
           EQRL ELGWSRY N ++P LLQFH+S DSAHLISLPKNF  FK +HMYDIVVKNR FF+V
Sbjct: 305 EQRLTELGWSRYDNSSQPNLLQFHKSDDSAHLISLPKNFDSFKSLHMYDIVVKNRSFFEV 364

Query: 121 RDATSS 127
           RD  +S
Sbjct: 365 RDPAAS 370

[Close]

BLAST of Lsi10G013850 vs. ExPASy TrEMBL
Match: A0A1Q3CDF3 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_21732 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 6.2e-51
Identity = 100/126 (79.37%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 1   MSGVWVFDKNGVARLISNPTRESFECKDPPQPGTATAPGARPRVLVYLPTNQVIRSYAEL 60
           MSGVW+FDKNGVARLI+NPTRESFE K+PP PGTATAPGARPRVLVYLP NQVIRSYAEL
Sbjct: 1   MSGVWIFDKNGVARLINNPTRESFEQKEPPYPGTATAPGARPRVLVYLPANQVIRSYAEL 60

Query: 61  EQRLGELGWSRYRNLAEPELLQFHRSHDSAHLISLPKNFAKFKPMHMYDIVVKNRQFFQV 120
           EQRL ELGW+RY N  +P LLQFH+S +SAHLISLPKNFA FK +HMYDIVVKNR  F+V
Sbjct: 61  EQRLTELGWTRYHNPDQPNLLQFHKSDNSAHLISLPKNFASFKNLHMYDIVVKNRSCFEV 120

Query: 121 RDATSS 127
           RD  ++
Sbjct: 121 RDPAAA 126

[Close]

BLAST of Lsi10G013850 vs. NCBI nr
Match: KAG6570697.1 (Flowering-promoting factor 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010544.1 Flowering-promoting factor 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 247.7 bits (631), Expect = 5.6e-62
Identity = 119/129 (92.25%), Postives = 122/129 (94.57%), Query Frame = 0


Query: 1   MSGVWVFDKNGVARLISNPTRESFECKDPPQPGTATAPGARPRVLVYLPTNQVIRSYAEL 60
           MSGVWVFDKNGVARLISNPTRESFECKDPP PGTATAPGARPRVLVYLPTNQVIRSYAEL
Sbjct: 1   MSGVWVFDKNGVARLISNPTRESFECKDPPYPGTATAPGARPRVLVYLPTNQVIRSYAEL 60

Query: 61  EQRLGELGWSRYRNLAEPELLQFHRSHDSAHLISLPKNFAKFKPMHMYDIVVKNRQFFQV 120
           EQRLGELGWSRYRN AEP+LLQFHRSHDSAHLISLPK+FAKFKPMHMYDIVVKNR FF+V
Sbjct: 61  EQRLGELGWSRYRNSAEPDLLQFHRSHDSAHLISLPKSFAKFKPMHMYDIVVKNRHFFEV 120

Query: 121 RDATSSQSS 130
           RD  SS  S
Sbjct: 121 RDPKSSHPS 129

[Close]

BLAST of Lsi10G013850 vs. NCBI nr
Match: XP_022148408.1 (flowering-promoting factor 1-like [Momordica charantia])

HSP 1 Score: 222.2 bits (565), Expect = 2.5e-54
Identity = 112/131 (85.50%), Postives = 119/131 (90.84%), Query Frame = 0


Query: 1   MSGVWVFDKNGVARLISNPTRESFECKDPPQPGTATAPGARPRVLVYLPTNQVIRSYAEL 60
           MSGVWVFDKNGVARLI+NPTRESFE KDPP PGTATAPGARPRVLVYLP NQVI SYAEL
Sbjct: 1   MSGVWVFDKNGVARLIANPTRESFEGKDPPYPGTATAPGARPRVLVYLPANQVIGSYAEL 60

Query: 61  EQRLGELGWSRYRN-LAEP-ELLQFHRSHDSAHLISLPKNFAKFKPMHMYDIVVKNRQFF 120
           EQRLGELGW+RYRN  AEP EL++FHRSHDSA LISLPK+FAKFKPMHMYDIVVKNR FF
Sbjct: 61  EQRLGELGWTRYRNSSAEPEELVRFHRSHDSADLISLPKSFAKFKPMHMYDIVVKNRHFF 120

Query: 121 QVRDATSSQSS 130
           QVRD  S+ +S
Sbjct: 121 QVRDPKSAAAS 131

[Close]

BLAST of Lsi10G013850 vs. NCBI nr
Match: OMO67780.1 (hypothetical protein CCACVL1_20321 [Corchorus capsularis])

HSP 1 Score: 214.2 bits (544), Expect = 6.8e-52
Identity = 100/122 (81.97%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 1   MSGVWVFDKNGVARLISNPTRESFECKDPPQPGTATAPGARPRVLVYLPTNQVIRSYAEL 60
           MSGVW+FDK GVARLISNPTRESFE KDP  PGT+TAPGARPRVLVYLPTNQVIRSY+EL
Sbjct: 1   MSGVWIFDKKGVARLISNPTRESFEQKDPIYPGTSTAPGARPRVLVYLPTNQVIRSYSEL 60

Query: 61  EQRLGELGWSRYRNLAEPELLQFHRSHDSAHLISLPKNFAKFKPMHMYDIVVKNRQFFQV 120
           EQRLGELGW+RY NL++PELLQFH+S++S HLISLP+NFA F+ +HMYDIVVKNR FF+V
Sbjct: 61  EQRLGELGWTRYYNLSQPELLQFHKSNNSVHLISLPRNFANFRSLHMYDIVVKNRSFFEV 120

Query: 121 RD 123
           RD
Sbjct: 121 RD 122

[Close]

BLAST of Lsi10G013850 vs. NCBI nr
Match: KAB5540818.1 (hypothetical protein DKX38_013792 [Salix brachista])

HSP 1 Score: 211.5 bits (537), Expect = 4.4e-51
Identity = 99/126 (78.57%), Postives = 110/126 (87.30%), Query Frame = 0


Query: 1   MSGVWVFDKNGVARLISNPTRESFECKDPPQPGTATAPGARPRVLVYLPTNQVIRSYAEL 60
           MSGVW+FDKNGV RL++NPTRESFE K+PP+PGTATAPGARPRVLVYLP N VIRSY EL
Sbjct: 245 MSGVWIFDKNGVTRLVTNPTRESFEQKEPPRPGTATAPGARPRVLVYLPANHVIRSYTEL 304

Query: 61  EQRLGELGWSRYRNLAEPELLQFHRSHDSAHLISLPKNFAKFKPMHMYDIVVKNRQFFQV 120
           EQRL ELGWSRY N ++P LLQFH+S DSAHLISLPKNF  FK +HMYDIVVKNR FF+V
Sbjct: 305 EQRLTELGWSRYDNSSQPNLLQFHKSDDSAHLISLPKNFDSFKSLHMYDIVVKNRSFFEV 364

Query: 121 RDATSS 127
           RD  +S
Sbjct: 365 RDPAAS 370

[Close]

BLAST of Lsi10G013850 vs. NCBI nr
Match: KAG5238222.1 (flowering-promoting factor [Salix suchowensis])

HSP 1 Score: 211.1 bits (536), Expect = 5.8e-51
Identity = 99/126 (78.57%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 1   MSGVWVFDKNGVARLISNPTRESFECKDPPQPGTATAPGARPRVLVYLPTNQVIRSYAEL 60
           MSGVW+FDKNGV RL++NPTRESFE K+PP PGTATAPGARPRVLVYLP N VIRSY EL
Sbjct: 1   MSGVWIFDKNGVTRLVTNPTRESFEQKEPPHPGTATAPGARPRVLVYLPANHVIRSYTEL 60

Query: 61  EQRLGELGWSRYRNLAEPELLQFHRSHDSAHLISLPKNFAKFKPMHMYDIVVKNRQFFQV 120
           EQRL ELGWSRY N ++P LLQFH+S DSAHLISLPKNF  FK +HMYDIVVKNR FF+V
Sbjct: 61  EQRLTELGWSRYDNSSQPNLLQFHKSDDSAHLISLPKNFDSFKSLHMYDIVVKNRSFFEV 120

Query: 121 RDATSS 127
           RD  +S
Sbjct: 121 RDPAAS 126

[Close]

BLAST of Lsi10G013850 vs. TAIR 10
Match: AT5G24860.1 (flowering promoting factor 1 )

HSP 1 Score: 113.2 bits (282), Expect = 1.5e-25
Identity = 60/123 (48.78%), Postives = 79/123 (64.23%), Query Frame = 0


Query: 1   MSGVWVFDKNGVARLISNPTRESFECKDPPQPGTATAPGARPRVLVYLPTNQVIRSYAEL 60
           MSGVWVF KNGV RL+ NP +   + ++            R +V+VYLPT +V+ SY+ L
Sbjct: 1   MSGVWVF-KNGVIRLVENPNQSGSDTQN------------RRKVMVYLPTGEVVSSYSTL 60

Query: 61  EQRLGELGWSRYRNLAEPELLQFHRSHDSAHLISLPKNFAKFKPMHMYDIVVKNRQFFQV 120
           EQ L  LGW RY    + +LLQFH+   S  LISLP++F KF  ++MYDIVVKN  +F V
Sbjct: 61  EQILQSLGWERYFGGGDTDLLQFHK-RSSIDLISLPRDFTKFNSVYMYDIVVKNPNYFHV 109

Query: 121 RDA 124
           RD+
Sbjct: 121 RDS 109

[Close]

BLAST of Lsi10G013850 vs. TAIR 10
Match: AT4G31380.1 (FPF1-like protein 1 )

HSP 1 Score: 110.5 bits (275), Expect = 9.9e-25
Identity = 60/124 (48.39%), Postives = 80/124 (64.52%), Query Frame = 0


Query: 1   MSGVWVFDKNGVARLISNPTRESF-ECKDPPQPGTATAPGARPRVLVYLPTNQVIRSYAE 60
           MSGVWVF+KNGV RL+ NP  +S  +  +    G       R ++LV+LP+++V+ SY  
Sbjct: 58  MSGVWVFNKNGVMRLVENPYNQSAGDSSESSSSGGNQQQRMRRKILVHLPSSEVVSSYGS 117

Query: 61  LEQRLGELGWSRYRNLAEPE-LLQFHRSHDSAHLISLPKNFAKFKPMHMYDIVVKNRQFF 120
           LE+ L  LGW RY +    + LLQFH+   S  LISLP++F+KF  +HMYDIVVKN   F
Sbjct: 118 LEKILKNLGWERYYSGDNTDHLLQFHK-RTSIDLISLPRDFSKFNSIHMYDIVVKNPNVF 177

Query: 121 QVRD 123
            VRD
Sbjct: 178 HVRD 180

[Close]

BLAST of Lsi10G013850 vs. TAIR 10
Match: AT5G10625.1 (BEST Arabidopsis thaliana protein match is: flowering promoting factor 1 (TAIR:AT5G24860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-23
Identity = 59/122 (48.36%), Postives = 77/122 (63.11%), Query Frame = 0


Query: 1   MSGVWVFDKNGVARLISNPTRESFECKDPPQPGTATAPGARPRVLVYLPTNQVIRSYAEL 60
           MSGVWVF+ NGV RL+ NP +           G +T    R  VLVYLPT + + SY+ L
Sbjct: 1   MSGVWVFN-NGVIRLVENPNQSG---------GVSTQSHGRRNVLVYLPTGEAVSSYSSL 60

Query: 61  EQRLGELGWSRYRNLAEPELLQFHRSHDSAHLISLPKNFAKFKPMHMYDIVVKNRQFFQV 120
           EQ L  LGW RY +  + +L+Q+H+   S  LISLP++F+KF  ++MYDIVVKN   F V
Sbjct: 61  EQILRSLGWERYFS-GDSDLIQYHK-RSSIDLISLPRDFSKFNSVYMYDIVVKNPNSFHV 110

Query: 121 RD 123
           RD
Sbjct: 121 RD 110

The following BLAST results are available for this feature:

BLAST of Lsi10G013850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0E1D7	9.7e-25	50.00	Flowering-promoting factor 1-like protein 3 OS=Oryza sativa subsp. japonica OX=3...	[more]
O24340	1.6e-24	52.85	Flowering-promoting factor 1 OS=Sinapis alba OX=3728 GN=FPF1 PE=2 SV=1	[more]
O23624	2.2e-24	48.78	Flowering-promoting factor 1 OS=Arabidopsis thaliana OX=3702 GN=FPF1 PE=1 SV=1	[more]
Q5Q0B3	1.4e-23	48.39	Flowering-promoting factor 1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=F...	[more]
Q9LXB5	1.5e-22	48.36	Flowering-promoting factor 1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=F...	[more]

BLAST of Lsi10G013850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE84	2.1e-62	92.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190350 PE=3 SV=1	[more]
A0A6J1D405	1.2e-54	85.50	flowering-promoting factor 1-like OS=Momordica charantia OX=3673 GN=LOC111017063...	[more]
A0A1R3HBS3	3.3e-52	81.97	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_20321 PE=3 ...	[more]
A0A5N5LE78	2.1e-51	78.57	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_013792 PE=3 SV=1	[more]
A0A1Q3CDF3	6.2e-51	79.37	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_21732 PE=3...	[more]

BLAST of Lsi10G013850 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570697.1	5.6e-62	92.25	Flowering-promoting factor 1, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_022148408.1	2.5e-54	85.50	flowering-promoting factor 1-like [Momordica charantia]	[more]
OMO67780.1	6.8e-52	81.97	hypothetical protein CCACVL1_20321 [Corchorus capsularis]	[more]
KAB5540818.1	4.4e-51	78.57	hypothetical protein DKX38_013792 [Salix brachista]	[more]
KAG5238222.1	5.8e-51	78.57	flowering-promoting factor [Salix suchowensis]	[more]

BLAST of Lsi10G013850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24860.1	1.5e-25	48.78	flowering promoting factor 1	[more]
AT4G31380.1	9.9e-25	48.39	FPF1-like protein 1	[more]
AT5G10625.1	1.1e-23	48.36	BEST Arabidopsis thaliana protein match is: flowering promoting factor 1 (TAIR:A...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039274	Flowering-promoting factor 1	PANTHER	PTHR33433	FLOWERING-PROMOTING FACTOR 1-LIKE PROTEIN 1	coord: 1..123
None	No IPR available	PANTHER	PTHR33433:SF11	FLOWERING-PROMOTING FACTOR 1-LIKE	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G013850.1	Lsi10G013850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009909	regulation of flower development
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity