Lsi10G013590 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G013590
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	histone H4
Location	chr10: 17781225 .. 17782593 (-)
RNA-Seq Expression	Lsi10G013590
Synteny	Lsi10G013590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGACGTGGAAAGGGCGGCAAGGGATTGGGAAAGGGAGGAGCAAAGCGTCACAGGAAGGTTTTAAGAGATAACATTCAGGGCATTACCAAGCCTGCAATTCGCCGTTTGGCCCGTAGAGGTGGTGTGAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGTGTTTTGAAGATTTTCCTTGAGAATGTGATTCGTGATGCTGTTACCTACACTGAGCATGCAAGGAGGAAGACGGTGACTGCTATGGATGTGGTTTATGCCTTGAAAAGGCAGGGAAGGACTTTGTACGGTTTCGGAGGTTAGGTTTAGGGTTTAATTCGAAGAGTATTTGTAGACCATTACTTTTGATCTTAAAATTTGTGGGCGAACTCGTTCTTATTGGTTTAATGTAAGTTAATTCCTCATTAGTTGTGAAGCGATCGAATGTTTAGTTCATTGAAGCGATGTGCTATATAAGAATTTTGCTTTTATTCTGTTTTTTTTGTTCTTTCGACATTTAACTAATATCTTAGAGCTAATTGTCTAACCGTCTATAATCTGAATTCAATGAACTTTGCTACACGTTTGCATACATTGAAAAGAAGGCAGGCACTGGGGAGTGGGTTTGATTTGAACATCTAATTTCAACCACTATTCTCCATATGTGATGAATGTTCTACTGTTATCCTGAAATGTGTATTGCATTGATATGTGCTATAATTGAACCTATGAATTCTTAAAATGCCAATTGAACTAGAAATTTAATTGATGGGTGAAGGCAAATTTAATATGGTATCATCCAGCCTATATTGTCTCTGTTTGGGCTGTTATTTTGTAAGACGCATGGTTTGCCGAAAAATTGTGTTTAGATTCAAAACCTTCAGTTATGAACTGGTTTAAAATTTCATATGAAATTTTTATTATTATCTCTAGCTAGCATTTTAATTAGTTGGAAGCCCTCTTGTTTTAGGGGGGTTTTGTTGGCTTGGTTTTTTTTTTTTTGTTGCCCTTGCATTATTTCATTTTTTTTTCTCAATGAAAGCAATTGTTTCTATAAAAAAAAAAATCATATGAAATTTATATTTCGTGCCCTGCGAACAATTAGGTCATTTGTTAATGGTAGGAATTTTAAGGATTATATGTTTCTCTGTGCTGCCCGAATGGAGGTATGAGTTAACTCAATTTGCTGTTTACATGAATCAAGTTCATTTGGCTTTGATAATCCAAGGGAGGAATTAATGCAAATTGGAGGCTGTTTGAATCAATGTTACTGGTTAACCTTTTAATTCCTGCAGTAGCTATTAATGCTTCAAATAGCAGGTTGGCCAAGAAGAGGCACTTCTATAGCCGTATCCTTTGCTCTATTCATAATAATTTTTAG

mRNA sequence

ATGTCTGGACGTGGAAAGGGCGGCAAGGGATTGGGAAAGGGAGGAGCAAAGCGTCACAGGAAGGTTTTAAGAGATAACATTCAGGGCATTACCAAGCCTGCAATTCGCCGTTTGGCCCGTAGAGGTGGTGTGAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGTGTTTTGAAGATTTTCCTTGAGAATGTGATTCGTGATGCTGTTACCTACACTGAGCATGCAAGGAGGAAGACGGTGACTGCTATGGATGTGGTTTATGCCTTGAAAAGGCAGGGAAGGACTTTGTACGGTTTCGGAGTAGCTATTAATGCTTCAAATAGCAGGTTGGCCAAGAAGAGGCACTTCTATAGCCGTATCCTTTGCTCTATTCATAATAATTTTTAG

Coding sequence (CDS)

ATGTCTGGACGTGGAAAGGGCGGCAAGGGATTGGGAAAGGGAGGAGCAAAGCGTCACAGGAAGGTTTTAAGAGATAACATTCAGGGCATTACCAAGCCTGCAATTCGCCGTTTGGCCCGTAGAGGTGGTGTGAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGTGTTTTGAAGATTTTCCTTGAGAATGTGATTCGTGATGCTGTTACCTACACTGAGCATGCAAGGAGGAAGACGGTGACTGCTATGGATGTGGTTTATGCCTTGAAAAGGCAGGGAAGGACTTTGTACGGTTTCGGAGTAGCTATTAATGCTTCAAATAGCAGGTTGGCCAAGAAGAGGCACTTCTATAGCCGTATCCTTTGCTCTATTCATAATAATTTTTAG

Protein sequence

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVAINASNSRLAKKRHFYSRILCSIHNNF

Homology

[Close]

BLAST of Lsi10G013590 vs. ExPASy Swiss-Prot
Match: P62785 (Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2)

HSP 1 Score: 196.8 bits (499), Expect = 1.5e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]

BLAST of Lsi10G013590 vs. ExPASy Swiss-Prot
Match: P59259 (Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 196.8 bits (499), Expect = 1.5e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]

BLAST of Lsi10G013590 vs. ExPASy Swiss-Prot
Match: Q6PMI5 (Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3)

HSP 1 Score: 196.8 bits (499), Expect = 1.5e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]

BLAST of Lsi10G013590 vs. ExPASy Swiss-Prot
Match: Q6WZ83 (Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3)

HSP 1 Score: 196.8 bits (499), Expect = 1.5e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]

BLAST of Lsi10G013590 vs. ExPASy Swiss-Prot
Match: Q6LAF3 (Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3)

HSP 1 Score: 196.8 bits (499), Expect = 1.5e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]

BLAST of Lsi10G013590 vs. ExPASy TrEMBL
Match: A0A251TVQ0 (Histone H4 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr09g0244961 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 7.0e-50
Identity = 107/115 (93.04%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVAINASNSRLAKK 116
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGV++  S +RL  K
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVSVRLSKNRLKPK 115

[Close]

BLAST of Lsi10G013590 vs. ExPASy TrEMBL
Match: A0A6A6K5L3 (Histone H4 OS=Hevea brasiliensis OX=3981 GN=GH714_003657 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 7.7e-49
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVAIN 107
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVA+N
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVALN 106

[Close]

BLAST of Lsi10G013590 vs. ExPASy TrEMBL
Match: W6TZP8 (Histone H4 OS=Echinococcus granulosus OX=6210 GN=EGR_10837 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.0e-48
Identity = 103/117 (88.03%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVAINASNSRLAKKRH 118
           +FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFG  + A+  +L   +H
Sbjct: 61  VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGARVRAARLKLISHKH 117

[Close]

BLAST of Lsi10G013590 vs. ExPASy TrEMBL
Match: A0A6N2M682 (Histone H4 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS264625 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.2e-48
Identity = 110/136 (80.88%), Postives = 115/136 (84.56%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVAINASN------SRLAK 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG   + SN      S    
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGATTHQSNLGFLTLSLSIS 120

Query: 121 KRHFYSRILCSIHNNF 131
              F  ++L ++HN F
Sbjct: 121 FSVFSLKLLRNLHNTF 136

[Close]

BLAST of Lsi10G013590 vs. ExPASy TrEMBL
Match: A0A6N2LPX8 (Histone H4 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS264625 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.2e-48
Identity = 110/136 (80.88%), Postives = 115/136 (84.56%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVAINASN------SRLAK 120
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG   + SN      S    
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGATTHQSNLGFLTLSLSIS 120

Query: 121 KRHFYSRILCSIHNNF 131
              F  ++L ++HN F
Sbjct: 121 FSVFSLKLLRNLHNTF 136

[Close]

BLAST of Lsi10G013590 vs. NCBI nr
Match: KAF5789521.1 (putative histone H4, histone-fold, CENP-T/Histone H4, histone [Helianthus annuus])

HSP 1 Score: 206.5 bits (524), Expect = 1.4e-49
Identity = 107/115 (93.04%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVAINASNSRLAKK 116
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGV++  S +RL  K
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVSVRLSKNRLKPK 115

[Close]

BLAST of Lsi10G013590 vs. NCBI nr
Match: KAF8397520.1 (hypothetical protein HHK36_016437 [Tetracentron sinense])

HSP 1 Score: 203.0 bits (515), Expect = 1.6e-48
Identity = 106/113 (93.81%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVAINASNSRLA 114
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG  + A+  RLA
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGEGLKATGLRLA 113

[Close]

BLAST of Lsi10G013590 vs. NCBI nr
Match: KAF2283376.1 (hypothetical protein GH714_003657 [Hevea brasiliensis])

HSP 1 Score: 203.0 bits (515), Expect = 1.6e-48
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVAIN 107
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVA+N
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVALN 106

[Close]

BLAST of Lsi10G013590 vs. NCBI nr
Match: XP_041651132.1 (uncharacterized protein LOC121514828 [Cheilinus undulatus])

HSP 1 Score: 202.6 bits (514), Expect = 2.1e-48
Identity = 104/115 (90.43%), Postives = 108/115 (93.91%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVAINASNSRLAKK 116
           +FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFG  +     R+AKK
Sbjct: 61  VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGATMAEGEKRVAKK 115

[Close]

BLAST of Lsi10G013590 vs. NCBI nr
Match: XP_024345501.1 (Histone H4 [Echinococcus granulosus] >EUB54305.1 Histone H4 [Echinococcus granulosus])

HSP 1 Score: 202.6 bits (514), Expect = 2.1e-48
Identity = 103/117 (88.03%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGVAINASNSRLAKKRH 118
           +FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFG  + A+  +L   +H
Sbjct: 61  VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGARVRAARLKLISHKH 117

[Close]

BLAST of Lsi10G013590 vs. TAIR 10
Match: AT1G07660.1 (Histone superfamily protein )

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]

BLAST of Lsi10G013590 vs. TAIR 10
Match: AT1G07820.1 (Histone superfamily protein )

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]

BLAST of Lsi10G013590 vs. TAIR 10
Match: AT1G07820.2 (Histone superfamily protein )

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]

BLAST of Lsi10G013590 vs. TAIR 10
Match: AT2G28740.1 (histone H4 )

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

[Close]

BLAST of Lsi10G013590 vs. TAIR 10
Match: AT3G45930.1 (Histone superfamily protein )

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-50
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 103
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102

The following BLAST results are available for this feature:

BLAST of Lsi10G013590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62785	1.5e-49	100.00	Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2	[more]
P59259	1.5e-49	100.00	Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2	[more]
Q6PMI5	1.5e-49	100.00	Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3	[more]
Q6WZ83	1.5e-49	100.00	Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3	[more]
Q6LAF3	1.5e-49	100.00	Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3	[more]

BLAST of Lsi10G013590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A251TVQ0	7.0e-50	93.04	Histone H4 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr09g0244961 PE=3 SV=1	[more]
A0A6A6K5L3	7.7e-49	99.06	Histone H4 OS=Hevea brasiliensis OX=3981 GN=GH714_003657 PE=3 SV=1	[more]
W6TZP8	1.0e-48	88.03	Histone H4 OS=Echinococcus granulosus OX=6210 GN=EGR_10837 PE=3 SV=1	[more]
A0A6N2M682	2.2e-48	80.88	Histone H4 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS264625 PE=3 SV=1	[more]
A0A6N2LPX8	2.2e-48	80.88	Histone H4 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS264625 PE=3 SV=1	[more]

BLAST of Lsi10G013590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF5789521.1	1.4e-49	93.04	putative histone H4, histone-fold, CENP-T/Histone H4, histone [Helianthus annuus...	[more]
KAF8397520.1	1.6e-48	93.81	hypothetical protein HHK36_016437 [Tetracentron sinense]	[more]
KAF2283376.1	1.6e-48	99.06	hypothetical protein GH714_003657 [Hevea brasiliensis]	[more]
XP_041651132.1	2.1e-48	90.43	uncharacterized protein LOC121514828 [Cheilinus undulatus]	[more]
XP_024345501.1	2.1e-48	88.03	Histone H4 [Echinococcus granulosus] >EUB54305.1 Histone H4 [Echinococcus granul...	[more]

BLAST of Lsi10G013590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07660.1	1.1e-50	100.00	Histone superfamily protein	[more]
AT1G07820.1	1.1e-50	100.00	Histone superfamily protein	[more]
AT1G07820.2	1.1e-50	100.00	Histone superfamily protein	[more]
AT2G28740.1	1.1e-50	100.00	histone H4	[more]
AT3G45930.1	1.1e-50	100.00	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001951	Histone H4	PRINTS	PR00623	HISTONEH4	coord: 5..16 score: 95.59 coord: 20..39 score: 93.38 coord: 62..76 score: 95.1 coord: 77..89 score: 90.05 coord: 89..100 score: 97.79 coord: 40..60 score: 93.56
IPR001951	Histone H4	SMART	SM00417	h44	coord: 16..90 e-value: 2.0E-29 score: 113.7
IPR001951	Histone H4	CDD	cd00076	H4	coord: 18..101 e-value: 9.85377E-44 score: 136.477
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..103 e-value: 2.9E-58 score: 196.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 3..102
IPR035425	CENP-T/Histone H4, histone fold	PFAM	PF15511	CENP-T_C	coord: 37..97 e-value: 2.5E-8 score: 34.0
None	No IPR available	PANTHER	PTHR10484	HISTONE H4	coord: 1..102
None	No IPR available	PANTHER	PTHR10484:SF185	HISTONE H4	coord: 1..102
IPR019809	Histone H4, conserved site	PROSITE	PS00047	HISTONE_H4	coord: 15..19

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G013590.1	Lsi10G013590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity