Lsi10G013530 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G013530
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Histone H2A
Location	chr10: 17738340 .. 17739212 (-)
RNA-Seq Expression	Lsi10G013530
Synteny	Lsi10G013530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTACGGTATAAAATCCACAACTCTCAAAGACGATCCGACTCAAACCCATCTCTCACTCAATCAACACCGAAAACTCTCCGGCGAGTAGTAGCTTCGTTTTCTTCACGGTAAAGGATCCAACCAGTGTTCGATGGAGACCGGCGGCAAGGCAAAGAAAGGCGCAGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGGCAGTTTCTCGCTCCGTCAAAGCCGGTCTACAGTTCCCCGTCGGCCGTATCGCTCGTTATCTGAAGAAAGGAAGATACGCTCAACGTGTCGGCACTGGCGCTCCGGTCTATTTAGCCGCAGTGATGGAGTATTTGGCCGCTGAGGTAACCGAATCGTCATTTTTCCTCTTCTTCTTCATCTCTCTCTTTCGAATCGTCATTGTATTGATCTTCAGTTGATTCGATTTGCAGGTTCTTGAGTTGGCTGGGAATGCGGCTAGAGACAACAAGAAGAACAGAATCATTCCAAGGCACGTTCTATTGGCGATTAGGAACGATGAAGAACTCGGAAAGTTGCTCGCCGGCGTAACTATTGCTAGCGGTGGTGTTCTTCCGAATATCAACCCGGTTCTGTTGCCGAAGAAGACGGATAAGGCTACGAAAGAGCCGAAATCTCCATCGAAGGCCGGGAAGTCTCCATCGAAGGCGGCTTGAAGGTTGGATTGCAGAGTTAGGATTGGATGAATCTGTAATTTATGATCGTCTTTTGGATTTCTTATTCCATCTTTTTTTTTTTTTTTGTAAGTGTAGACGAAGAATTAGGGATTTGGAATTCAATACTGTATTCGATATGGCTATTTTACGGATTTACAAGCGAGGAATCAATCAGATGACTTGTTCTGTTCTTCATCTTCAAGAAA

mRNA sequence

CTACGGTATAAAATCCACAACTCTCAAAGACGATCCGACTCAAACCCATCTCTCACTCAATCAACACCGAAAACTCTCCGGCGAGTAGTAGCTTCGTTTTCTTCACGGTAAAGGATCCAACCAGTGTTCGATGGAGACCGGCGGCAAGGCAAAGAAAGGCGCAGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGGCAGTTTCTCGCTCCGTCAAAGCCGGTCTACAGTTCCCCGTCGGCCGTATCGCTCGTTATCTGAAGAAAGGAAGATACGCTCAACGTGTCGGCACTGGCGCTCCGGTCTATTTAGCCGCAGTGATGGAGTATTTGGCCGCTGAGGTTCTTGAGTTGGCTGGGAATGCGGCTAGAGACAACAAGAAGAACAGAATCATTCCAAGGCACGTTCTATTGGCGATTAGGAACGATGAAGAACTCGGAAAGTTGCTCGCCGGCGTAACTATTGCTAGCGGTGGTGTTCTTCCGAATATCAACCCGGTTCTGTTGCCGAAGAAGACGGATAAGGCTACGAAAGAGCCGAAATCTCCATCGAAGGCCGGGAAGTCTCCATCGAAGGCGGCTTGAAGGTTGGATTGCAGAGTTAGGATTGGATGAATCTGTAATTTATGATCGTCTTTTGGATTTCTTATTCCATCTTTTTTTTTTTTTTTGTAAGTGTAGACGAAGAATTAGGGATTTGGAATTCAATACTGTATTCGATATGGCTATTTTACGGATTTACAAGCGAGGAATCAATCAGATGACTTGTTCTGTTCTTCATCTTCAAGAAA

Coding sequence (CDS)

ATGGAGACCGGCGGCAAGGCAAAGAAAGGCGCAGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGGCAGTTTCTCGCTCCGTCAAAGCCGGTCTACAGTTCCCCGTCGGCCGTATCGCTCGTTATCTGAAGAAAGGAAGATACGCTCAACGTGTCGGCACTGGCGCTCCGGTCTATTTAGCCGCAGTGATGGAGTATTTGGCCGCTGAGGTTCTTGAGTTGGCTGGGAATGCGGCTAGAGACAACAAGAAGAACAGAATCATTCCAAGGCACGTTCTATTGGCGATTAGGAACGATGAAGAACTCGGAAAGTTGCTCGCCGGCGTAACTATTGCTAGCGGTGGTGTTCTTCCGAATATCAACCCGGTTCTGTTGCCGAAGAAGACGGATAAGGCTACGAAAGAGCCGAAATCTCCATCGAAGGCCGGGAAGTCTCCATCGAAGGCGGCTTGA

Protein sequence

METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNINPVLLPKKTDKATKEPKSPSKAGKSPSKAA

Homology

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BLAST of Lsi10G013530 vs. ExPASy Swiss-Prot
Match: P19177 (Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.2e-63
Identity = 131/149 (87.92%), Postives = 139/149 (93.29%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           MET GKAKKG GGR+GG +KK+V+RSVKAGLQFPVGRI RYLKKGRYAQRVGTGAPVYLA
Sbjct: 1   METAGKAKKGFGGRKGGPRKKSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AV+EYLAAEVLELAGNAARDNKK RIIPRH+LLA+RNDEELGKLLAGVT A GGVLPNIN
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNIN 120

Query: 121 PVLLPKKT-DKATKEPKSPSKAGKSPSKA 149
           PVLLPKKT +KA KEPKSPSKAGKSP KA
Sbjct: 121 PVLLPKKTAEKAAKEPKSPSKAGKSPKKA 149

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BLAST of Lsi10G013530 vs. ExPASy Swiss-Prot
Match: Q9M531 (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.6e-60
Identity = 130/153 (84.97%), Postives = 138/153 (90.20%), Query Frame = 0


Query: 1   METGGKAKKGAGGRR-GGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYL 60
           M+TG K KKGAG R+ GG KKK VSRSVKAGLQFPVGRI R+LKKGRYAQRVG+GAPVYL
Sbjct: 1   MDTGAKLKKGAGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYL 60

Query: 61  AAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNI 120
           AAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA GGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKTDK----ATKEPKSPSKAGKSPSKA 149
           NPVLLPKK +K    ATKEPKSP+KA KSP KA
Sbjct: 121 NPVLLPKKAEKAAAAATKEPKSPAKATKSPKKA 153

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BLAST of Lsi10G013530 vs. ExPASy Swiss-Prot
Match: Q2HU68 (Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.7e-60
Identity = 123/148 (83.11%), Postives = 133/148 (89.86%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           M+   K KKGAGGR+GG +KK+V+RS +AGLQFPVGRI RYLKKGRYAQRVGTGAPVYLA
Sbjct: 1   MDASTKTKKGAGGRKGGPRKKSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA GGVLPNIN
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNIN 120

Query: 121 PVLLPKKTDKATKEPKSPSKAGKSPSKA 149
           P+LLPKK +KA    KSPSKA KSP KA
Sbjct: 121 PILLPKKNEKAATTTKSPSKATKSPKKA 148

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BLAST of Lsi10G013530 vs. ExPASy Swiss-Prot
Match: Q2HU65 (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 5.3e-59
Identity = 126/153 (82.35%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   METGGKAKKGAGGRR-GGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYL 60
           M+   K KKGAGGR+ GG +KK+V+RS++AGLQFPVGRI RYLKKGRYAQRVGTGAPVYL
Sbjct: 1   MDASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNI 120
           AAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA GGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKTDKA---TKEPKSPS-KAGKSPSKA 149
           NPVLLPKKT+++   +KEPKSP  KAGKSP KA
Sbjct: 121 NPVLLPKKTERSNTVSKEPKSPKPKAGKSPKKA 153

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BLAST of Lsi10G013530 vs. ExPASy Swiss-Prot
Match: A2WQG7 (Probable histone H2A.5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.0e-58
Identity = 130/151 (86.09%), Postives = 135/151 (89.40%), Query Frame = 0


Query: 4   GGKAKKGAGGRR-GGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLAAV 63
           GGK KKGA GR+ GG +KKAVSRSVKAGLQFPVGRI RYLKKGRYAQR+GTGAPVYLAAV
Sbjct: 9   GGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAV 68

Query: 64  MEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNINPV 123
           +EYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIA GGVLPNINPV
Sbjct: 69  LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPV 128

Query: 124 LLPKKTDK----ATKEPKSPSK-AGKSPSKA 149
           LLPKKT +    A KE KSP K AGKSP KA
Sbjct: 129 LLPKKTAEKAAAAGKEAKSPKKAAGKSPKKA 159

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BLAST of Lsi10G013530 vs. ExPASy TrEMBL
Match: A0A1S3BK65 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490586 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.8e-70
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA
Sbjct: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKATKEPKSPSKAGKSPSKAA 150
           PVLLPKKTDK TKEPKSPSKAGKSPSKAA
Sbjct: 121 PVLLPKKTDKGTKEPKSPSKAGKSPSKAA 149

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BLAST of Lsi10G013530 vs. ExPASy TrEMBL
Match: A0A6J1FUE6 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111448508 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.9e-68
Identity = 144/149 (96.64%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME  GKAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKATKEPKSPSKAGKSPSKAA 150
           PVLLPKKTDKA KEPKSPSKAGKSPSKAA
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKAA 149

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BLAST of Lsi10G013530 vs. ExPASy TrEMBL
Match: A0A6J1J904 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111484538 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 8.5e-68
Identity = 143/149 (95.97%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME  GKAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKATKEPKSPSKAGKSPSKAA 150
           PVLLPKKTDKA KEPKSPSKAGKSPSK A
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKVA 149

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BLAST of Lsi10G013530 vs. ExPASy TrEMBL
Match: A0A6J1L1N2 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111499596 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.1e-66
Identity = 139/149 (93.29%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME   KAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKATKEPKSPSKAGKSPSKAA 150
           P+LLPKKTDKA KEPKSPSK GKSPSK++
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKSS 149

[Close]

BLAST of Lsi10G013530 vs. ExPASy TrEMBL
Match: A0A6J1G6M6 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111451351 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.1e-66
Identity = 139/149 (93.29%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME   KAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKATKEPKSPSKAGKSPSKAA 150
           P+LLPKKTDKA KEPKSPSK GKSPSK++
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKSS 149

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BLAST of Lsi10G013530 vs. NCBI nr
Match: XP_008448380.1 (PREDICTED: histone H2A [Cucumis melo])

HSP 1 Score: 275.0 bits (702), Expect = 3.8e-70
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA
Sbjct: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKATKEPKSPSKAGKSPSKAA 150
           PVLLPKKTDK TKEPKSPSKAGKSPSKAA
Sbjct: 121 PVLLPKKTDKGTKEPKSPSKAGKSPSKAA 149

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BLAST of Lsi10G013530 vs. NCBI nr
Match: XP_022943937.1 (histone H2A [Cucurbita moschata] >XP_023512023.1 histone H2A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 267.7 bits (683), Expect = 6.0e-68
Identity = 144/149 (96.64%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME  GKAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKATKEPKSPSKAGKSPSKAA 150
           PVLLPKKTDKA KEPKSPSKAGKSPSKAA
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKAA 149

[Close]

BLAST of Lsi10G013530 vs. NCBI nr
Match: XP_022986957.1 (histone H2A [Cucurbita maxima])

HSP 1 Score: 266.2 bits (679), Expect = 1.8e-67
Identity = 143/149 (95.97%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME  GKAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKATKEPKSPSKAGKSPSKAA 150
           PVLLPKKTDKA KEPKSPSKAGKSPSK A
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKVA 149

[Close]

BLAST of Lsi10G013530 vs. NCBI nr
Match: XP_038900828.1 (histone H2A-like [Benincasa hispida])

HSP 1 Score: 265.4 bits (677), Expect = 3.0e-67
Identity = 142/149 (95.30%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           METGGKAKKGAGGRRGGEKKK+VSRSV+AGLQFPVGRIARYLK GRYA+RVGTGAPVYLA
Sbjct: 1   METGGKAKKGAGGRRGGEKKKSVSRSVRAGLQFPVGRIARYLKHGRYARRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNK+NRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKRNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKATKEPKSPSKAGKSPSKAA 150
           PVLLPKKTDKATKEPKSPSK  KSPSKAA
Sbjct: 121 PVLLPKKTDKATKEPKSPSKGAKSPSKAA 149

[Close]

BLAST of Lsi10G013530 vs. NCBI nr
Match: XP_023006960.1 (histone H2A-like [Cucurbita maxima])

HSP 1 Score: 261.5 bits (667), Expect = 4.3e-66
Identity = 139/149 (93.29%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME   KAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKATKEPKSPSKAGKSPSKAA 150
           P+LLPKKTDKA KEPKSPSK GKSPSK++
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKSS 149

[Close]

BLAST of Lsi10G013530 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 226.1 bits (575), Expect = 1.9e-59
Identity = 125/153 (81.70%), Postives = 136/153 (88.89%), Query Frame = 0


Query: 1   METGGKAKKGAGGRR--GGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVY 60
           M++G K KKGA GRR  GG KKK VSRSVK+GLQFPVGRI RYLKKGRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPN 120
           LAAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELG LL GVTIA GGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKTDKA---TKEPKSPSKAGKSPSKA 149
           INP+LLPKK++KA   TK PKSPSKA KSP K+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

[Close]

BLAST of Lsi10G013530 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 212.6 bits (540), Expect = 2.1e-55
Identity = 125/177 (70.62%), Postives = 136/177 (76.84%), Query Frame = 0


Query: 1   METGGKAKKGAGGRR--GGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVY 60
           M++G K KKGA GRR  GG KKK VSRSVK+GLQFPVGRI RYLKKGRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVMEYLAAE------------------------VLELAGNAARDNKKNRIIPRHVLLA 120
           LAAV+EYLAAE                        VLELAGNAARDNKKNRIIPRHVLLA
Sbjct: 61  LAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLA 120

Query: 121 IRNDEELGKLLAGVTIASGGVLPNINPVLLPKKTDKA---TKEPKSPSKAGKSPSKA 149
           +RNDEELG LL GVTIA GGVLPNINP+LLPKK++KA   TK PKSPSKA KSP K+
Sbjct: 121 VRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177

[Close]

BLAST of Lsi10G013530 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 205.7 bits (522), Expect = 2.6e-53
Identity = 112/143 (78.32%), Postives = 127/143 (88.81%), Query Frame = 0


Query: 6   KAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLAAVMEY 65
           K  +GAGGR+GG++KK+VS+SVKAGLQFPVGRIARYLKKGRYA R G+GAPVYLAAV+EY
Sbjct: 9   KPTRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEY 68

Query: 66  LAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNINPVLLP 125
           LAAEVLELAGNAARDNKKNRI PRH+ LAIRNDEELG+LL GVTIASGGVLPNINPVLLP
Sbjct: 69  LAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLP 128

Query: 126 KKTDKATKEPKSPSKAGKSPSKA 149
           KK+  ++ + +  S A KSP KA
Sbjct: 129 KKSTASSSQAEKAS-ATKSPKKA 150

[Close]

BLAST of Lsi10G013530 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 201.1 bits (510), Expect = 6.4e-52
Identity = 114/150 (76.00%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 1   METGGKAKKGAGGRR--GGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVY 60
           ME+ GK KK  GGR+  G  K K+VS+S+KAGLQFPVGRI R+LKKGRYAQR+G GAPVY
Sbjct: 1   MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61  LAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPN 120
           +AAV+EYLAAEVLELAGNAARDNKK+RIIPRH+LLAIRNDEELGKLL+GVTIA GGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPN 120

Query: 121 INPVLLPKKT------DKATKEP-KSPSKA 142
           IN VLLPKK+      +KATK P KSP KA
Sbjct: 121 INSVLLPKKSATKPAEEKATKSPVKSPKKA 150

[Close]

BLAST of Lsi10G013530 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 177.6 bits (449), Expect = 7.6e-45
Identity = 89/112 (79.46%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 17  GEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLAAVMEYLAAEVLELAGN 76
           G  KKA +RS KAGLQFPVGRIAR+LKKG+YA+RVG GAPVYLAAV+EYLAAEVLELAGN
Sbjct: 11  GSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGN 70

Query: 77  AARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNINPVLLPKKT 129
           AARDNKK RI+PRH+ LA+RNDEEL KLL  VTIA+GGV+PNI+ +LLPKKT
Sbjct: 71  AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

The following BLAST results are available for this feature:

BLAST of Lsi10G013530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19177	1.2e-63	87.92	Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1	[more]
Q9M531	1.6e-60	84.97	Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
Q2HU68	3.7e-60	83.11	Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 P...	[more]
Q2HU65	5.3e-59	82.35	Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P...	[more]
A2WQG7	2.0e-58	86.09	Probable histone H2A.5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_002060 PE=3...	[more]

BLAST of Lsi10G013530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BK65	1.8e-70	99.33	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490586 PE=3 SV=1	[more]
A0A6J1FUE6	2.9e-68	96.64	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111448508 PE=3 SV=1	[more]
A0A6J1J904	8.5e-68	95.97	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111484538 PE=3 SV=1	[more]
A0A6J1L1N2	2.1e-66	93.29	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111499596 PE=3 SV=1	[more]
A0A6J1G6M6	2.1e-66	93.29	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111451351 PE=3 SV=1	[more]

BLAST of Lsi10G013530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448380.1	3.8e-70	99.33	PREDICTED: histone H2A [Cucumis melo]	[more]
XP_022943937.1	6.0e-68	96.64	histone H2A [Cucurbita moschata] >XP_023512023.1 histone H2A [Cucurbita pepo sub...	[more]
XP_022986957.1	1.8e-67	95.97	histone H2A [Cucurbita maxima]	[more]
XP_038900828.1	3.0e-67	95.30	histone H2A-like [Benincasa hispida]	[more]
XP_023006960.1	4.3e-66	93.29	histone H2A-like [Cucurbita maxima]	[more]

BLAST of Lsi10G013530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02560.1	1.9e-59	81.70	histone H2A 12	[more]
AT5G02560.2	2.1e-55	70.62	histone H2A 12	[more]
AT5G27670.1	2.6e-53	78.32	histone H2A 7	[more]
AT5G59870.1	6.4e-52	76.00	histone H2A 6	[more]
AT1G51060.1	7.6e-45	79.46	histone H2A 10	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 50..65 score: 81.37 coord: 65..78 score: 89.46 coord: 21..43 score: 71.22 coord: 79..93 score: 73.78 coord: 107..125 score: 76.19
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 10..130 e-value: 2.0E-79 score: 279.9
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 19..127 e-value: 5.3568E-67 score: 197.172
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 6..137 e-value: 1.3E-64 score: 217.8
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 24..127
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 99..133 e-value: 4.9E-19 score: 67.8
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 16..96 e-value: 1.1E-13 score: 51.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..149
None	No IPR available	PANTHER	PTHR23430:SF304	HISTONE H2A	coord: 8..143
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 8..143
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 29..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G013530.1	Lsi10G013530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000775	chromosome, centromeric region
cellular_component	GO:0000792	heterochromatin
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity