Lsi10G013240 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G013240
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	embryo-specific protein ATS3A-like
Location	chr10: 17456343 .. 17458446 (+)
RNA-Seq Expression	Lsi10G013240
Synteny	Lsi10G013240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAATTCCGGCGGAAAGTCGCCGGCGTTTTACCCTCTTCTTCTCTTTTCTCTACTTTCTGCCGCCCGTTGTCTCGCTTCCGACGATAAGGTAATCTACTTTTTTTTTTTTTTTTTGTTAACCAACAAAATAGACGAGTAGAATTGATGCATGAACAACAATTTGTTAAAGTTAACTTTAACTGAGTGTTTAAAATTGATTCGCTTGTGGATACTTAAAAGTTTAATTCACGATGTTATTGTTTAAAATGATATAACTAAGAGAAATTATTTACATAAAATAACAAAAATTTTAGATAGTTGTAATAAACGCTGATAGAAGTCTATCAGAGTCTATTAGTGATAGAAATGATAGAAGTCTATCACTAATAGATGCTGACAGAACTATATCAATGTCTATTAGTGTTCTTTTTTTGCTATTTTCTGTAAATAGTTTGACATATTTTCTATTTGCAAAAATTTTCCTATAATTATTAGGTTAATATTTTAATTGGTACAAATTTAAAGTATAAATTGATATTTTCTTTAAAAATTAATTAATGTTTTCTTCACCTGATTTAAGTTGTTTGTATCAAATTATAGATTTGGTTCCTCTAATTCGAATCGTTTTTAACTTGATAGCTATAGTCTAGAAGTTTTAATTTAGTCGAATTTCAATTTGGTTTTTCGAGTTTGGGCTTTAGTTTTAATTTGGTTGTATATTTGGTTACACCTTTCTAATTCCCTTTACTTGCGTTGGAATTTCTTGAACAGATTTCATATTTTCGTTTAGCTCTTAATTCTAATATAGTCAATTAAACAAGGTTAGGTCAAATATAAGTTTATCTATCTTTTTCTTTTCTTTTGTTAAATTATTAAAAATATTACTAATTTTGTACTTTCTTTAAAAAAAAAATATACTTCTATTCTTTTAAAAGTTGCATTTCATAAATATTTCAGGAGTGTTTGATCCACCAACTACATAAGTGGTGTTAAATAACTCAATTTCCAGAGTAAACATTATTGAAATTTCTATATTTATCGAAAAACTTCATCTTTTCTATCTTTTTCTATTTTGCATATTTATCGAGAAATCTCATTTTACAATTTTGCACTCAAAGCACAAACTTCTTAACCCCAACACAGTAACTTTAGACTTCATAACTCAATTCAATATCTAGAACACTCCTGTCAAGAGACTCAAGACAACTCTTATAAGGGTAGAAATCATTTATAATTTTTGACAAAAAAAAAGTTGAGACTTTAGATTTTGTGGTACTGATTTGGAATGAGAATATTGACTATCACTCTGTTTCAATTCTCCATTTTTGTTTCAAATACTAGAAGACTTTTACTTTAAAAGTAGTATTGAAATGTTTGTGAAAGGTCAAAAATTAATATTAAAAATTTTAAAAGATATAAGATATTTTTGAAACAAAACGTGGAGTAAAGGATGATGTGTGAAATTCAACTCAACTATAAGTATCTTAGATTATAGAGATTAAATTGAAGCAATATCAAAATAATAAAAATCAAATTTCGATCTAAATTATTTCGACTAAATTAAAATTTTTAAAATTATGGAACTTTTTTTTAAGCTCTTATTTTCAAACCATGGATGTCATAGTTGTAATTTTAACCTTCTTTTATTAATCATCTAAGATTCTAAATTGCAGAAAAGCTGTATGTACGCCGTCACCGTCGAAACAACTTGCACGAAAGGCGCCGACACATCGAACCACGTCAGCCTGAGATTCGGCGACACGAATTCAAACGACATTGTCGTAAAACGTTTGAATTCGAAGCATGTGAGAAGGGTTGATCCTTTAGAACCTCAAGTTCTGGACGACATGTCGAGAAAGCCGTTTCAAGTTTGTATGGTGGATCAGTTCCAAGTGACAGGAAAATGCGTGACGTCACCGATTTGTTACCTTTACCTTAAACTCGCCGGCGCCGACGACTGGCGCCCGGGATTCGTTCAAGTCCGGTCGCTGGAGGGCCCACATCTTAGCTCGAATTATTTCTATTTCCGACGAGTTTTGCCTCGGCACGTGTGGCATGGATTTGACACGTGCCCGGGGGAAGTCACTCCTTTTGGCATCAAACGCAATAGAAAAGTTTAA

mRNA sequence

ATGGCTAATTCCGGCGGAAAGTCGCCGGCGTTTTACCCTCTTCTTCTCTTTTCTCTACTTTCTGCCGCCCATTCTAAATTGCAGAAAAGCTGTATGTACGCCGTCACCGTCGAAACAACTTGCACGAAAGGCGCCGACACATCGAACCACGTCAGCCTGAGATTCGGCGACACGAATTCAAACGACATTGTCGTAAAACGTTTGAATTCGAAGCATGTGAGAAGGGTTGATCCTTTAGAACCTCAAGTTCTGGACGACATGTCGAGAAAGCCGTTTCAAGTTTGTATGGTGGATCAGTTCCAAGTGACAGGAAAATGCGTGACGTCACCGATTTGTTACCTTTACCTTAAACTCGCCGGCGCCGACGACTGGCGCCCGGGATTCGTTCAAGTCCGGTCGCTGGAGGGCCCACATCTTAGCTCGAATTATTTCTATTTCCGACGAGTTTTGCCTCGGCACGTGTGGCATGGATTTGACACGTGCCCGGGGGAAGTCACTCCTTTTGGCATCAAACGCAATAGAAAAGTTTAA

Coding sequence (CDS)

ATGGCTAATTCCGGCGGAAAGTCGCCGGCGTTTTACCCTCTTCTTCTCTTTTCTCTACTTTCTGCCGCCCATTCTAAATTGCAGAAAAGCTGTATGTACGCCGTCACCGTCGAAACAACTTGCACGAAAGGCGCCGACACATCGAACCACGTCAGCCTGAGATTCGGCGACACGAATTCAAACGACATTGTCGTAAAACGTTTGAATTCGAAGCATGTGAGAAGGGTTGATCCTTTAGAACCTCAAGTTCTGGACGACATGTCGAGAAAGCCGTTTCAAGTTTGTATGGTGGATCAGTTCCAAGTGACAGGAAAATGCGTGACGTCACCGATTTGTTACCTTTACCTTAAACTCGCCGGCGCCGACGACTGGCGCCCGGGATTCGTTCAAGTCCGGTCGCTGGAGGGCCCACATCTTAGCTCGAATTATTTCTATTTCCGACGAGTTTTGCCTCGGCACGTGTGGCATGGATTTGACACGTGCCCGGGGGAAGTCACTCCTTTTGGCATCAAACGCAATAGAAAAGTTTAA

Protein sequence

MANSGGKSPAFYPLLLFSLLSAAHSKLQKSCMYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKPFQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFGIKRNRKV

Homology

[Close]

BLAST of Lsi10G013240 vs. ExPASy Swiss-Prot
Match: Q681K2 (Embryo-specific protein ATS3A OS=Arabidopsis thaliana OX=3702 GN=ATS3A PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.0e-18
Identity = 48/151 (31.79%), Postives = 78/151 (51.66%), Query Frame = 0


Query: 13  PLLLFSLLSAAHSKLQKSCMYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKH 72
           PL + S +     +   +C Y V ++T+C+  + T + +S+ FGD   N++ VKR     
Sbjct: 30  PLPIDSFIPKPKLENAAACSYTVIIKTSCSSVSYTRDKISISFGDVYGNEVYVKR----- 89

Query: 73  VRRVDPLEPQVLDDMSRKPFQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVR 132
                      LDD S + F+ C  D ++++G C+   +CYLYL   G+D W+P  V++ 
Sbjct: 90  -----------LDDPSSRTFEKCSSDTYKISGPCMRD-VCYLYLLRQGSDGWKPENVKI- 149

Query: 133 SLEGPHLSSNYFYFRRVLPRHVWHGFDTCPG 164
              G  + S  FY+   LP  VW+GF+ C G
Sbjct: 150 --YGSSIRSVTFYYNLFLPNSVWYGFNVCNG 160

[Close]

BLAST of Lsi10G013240 vs. ExPASy Swiss-Prot
Match: Q6NPM5 (Embryo-specific protein ATS3B OS=Arabidopsis thaliana OX=3702 GN=ATS3B PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-15
Identity = 49/152 (32.24%), Postives = 71/152 (46.71%), Query Frame = 0


Query: 26  KLQKSCMYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLD 85
           KL  +C Y V + T+C+    T + +S+ FGD   N I   R                LD
Sbjct: 43  KLGNTCAYTVIISTSCSSTRYTRDQISVAFGDGYGNQIYAPR----------------LD 102

Query: 86  DMSRKPFQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFY 145
           D S K F+ C  D FQ+ G C T  ICY+YL  +G D W P  V++ S     ++   F 
Sbjct: 103 DPSTKTFEQCSSDTFQINGPC-TYQICYVYLYRSGPDGWIPNTVKIYSHGSKAVT---FP 162

Query: 146 FRRVLPRHVWHGFDTC----PGEVTPFGIKRN 174
           +   +P  VW+GF+ C       V   G++R+
Sbjct: 163 YNTYVPESVWYGFNYCNSASDSNVLAIGLRRS 174

[Close]

BLAST of Lsi10G013240 vs. ExPASy Swiss-Prot
Match: Q9LYP6 (Embryo-specific protein ATS3 OS=Arabidopsis thaliana OX=3702 GN=ATS3 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-10
Identity = 41/137 (29.93%), Postives = 63/137 (45.99%), Query Frame = 0


Query: 28  QKSCMYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDM 87
           Q +C Y V V T+C     T + +S+ FGD + N +   +L                  +
Sbjct: 31  QGTCPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGG----------------L 90

Query: 88  SRKP--FQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFY 147
            R P     C  + FQV G+C+  PIC LY+   G D W P  +++ S EG    S  F 
Sbjct: 91  VRGPGGLGKCSTNTFQVRGQCLNDPICSLYINRNGPDGWVPESIEIYS-EGS--KSVKFD 148

Query: 148 FRRVLPR-HVWHGFDTC 162
           F + +P+ + W+G + C
Sbjct: 151 FSKSVPQLNTWYGHNNC 148

[Close]

BLAST of Lsi10G013240 vs. ExPASy TrEMBL
Match: A0A1S3CK61 (uncharacterized protein LOC103501893 OS=Cucumis melo OX=3656 GN=LOC103501893 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 8.7e-88
Identity = 159/180 (88.33%), Postives = 167/180 (92.78%), Query Frame = 0


Query: 1   MANSGGKSPAFYPLLLFSLLSAAHSKL----QKSCMYAVTVETTCTKGADTSNHVSLRFG 60
           MA + G  P F+ LLLFSLLSA H  L    +K+CMYAVTVET+CTKGADTSNHVSLRFG
Sbjct: 1   MAYTRGTWPPFFALLLFSLLSATHCLLGNDKEKNCMYAVTVETSCTKGADTSNHVSLRFG 60

Query: 61  DTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKPFQVCMVDQFQVTGKCVTSPICYLYL 120
           DTNSNDIVV+RLNSKHVRRVDPLEPQVLDD+SRKPFQVCMVDQFQVTGKCVTSPICYLYL
Sbjct: 61  DTNSNDIVVRRLNSKHVRRVDPLEPQVLDDISRKPFQVCMVDQFQVTGKCVTSPICYLYL 120

Query: 121 KLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFGIKRNRKV 177
           KL+GADDWRPGFVQVRSLEGPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFGIKRNRKV
Sbjct: 121 KLSGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFGIKRNRKV 180

[Close]

BLAST of Lsi10G013240 vs. ExPASy TrEMBL
Match: A0A0A0KC84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G301050 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.9e-87
Identity = 158/179 (88.27%), Postives = 166/179 (92.74%), Query Frame = 0


Query: 1   MANSGGKSPAFYPLLLFSLLSAAHSKL---QKSCMYAVTVETTCTKGADTSNHVSLRFGD 60
           MANSG  SP F  LLLFSLLSA H  L   +K+CMYAVTVET+CTKGADTSNHVSLRFGD
Sbjct: 1   MANSGRTSPPFIALLLFSLLSATHCLLHNDKKNCMYAVTVETSCTKGADTSNHVSLRFGD 60

Query: 61  TNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKPFQVCMVDQFQVTGKCVTSPICYLYLK 120
           TNSNDIVV+RLN KHVRRVDPLEPQVLDD+SRKPFQVCMVDQFQVTGKCVTSPICYLYLK
Sbjct: 61  TNSNDIVVRRLNLKHVRRVDPLEPQVLDDVSRKPFQVCMVDQFQVTGKCVTSPICYLYLK 120

Query: 121 LAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFGIKRNRKV 177
           L+G DDWRPGFVQVRSL+GPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFG+KRNRKV
Sbjct: 121 LSGTDDWRPGFVQVRSLKGPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFGMKRNRKV 179

[Close]

BLAST of Lsi10G013240 vs. ExPASy TrEMBL
Match: A0A6J1CYS2 (embryo-specific protein ATS3A-like OS=Momordica charantia OX=3673 GN=LOC111015516 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.4e-84
Identity = 151/179 (84.36%), Postives = 162/179 (90.50%), Query Frame = 0


Query: 1   MANSGGKSPAFYPLLLFSLLSAAHSKLQ---KSCMYAVTVETTCTKGADTSNHVSLRFGD 60
           M NSGG  P+FY +LL SLLSA  S +    K+CMYAVTVETTCTKGADTSNHVSLRFGD
Sbjct: 1   MGNSGGTPPSFYAVLLISLLSAGESLVSNDTKTCMYAVTVETTCTKGADTSNHVSLRFGD 60

Query: 61  TNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKPFQVCMVDQFQVTGKCVTSPICYLYLK 120
           TNSNDIVV+RLNS HV+RVDPLEP+VLDDMSRKPFQ CMVDQFQVTGKCVTSP+CY+YLK
Sbjct: 61  TNSNDIVVRRLNSMHVKRVDPLEPEVLDDMSRKPFQACMVDQFQVTGKCVTSPVCYVYLK 120

Query: 121 LAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFGIKRNRKV 177
           LAGADDWRPGFV+VRSLEGPHLSS YFYFRRVLPRHVWHGFDTC GEVTPFGIK +RKV
Sbjct: 121 LAGADDWRPGFVKVRSLEGPHLSSGYFYFRRVLPRHVWHGFDTCGGEVTPFGIKHHRKV 179

[Close]

BLAST of Lsi10G013240 vs. ExPASy TrEMBL
Match: A0A5D3CVS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00990 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.5e-79
Identity = 140/144 (97.22%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 32  MYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKP 91
           MYAVTVET+CTKGADTSNHVSLRFGDTNSNDIVV+RLNSKHVRRVDPLEPQVLDD+SRKP
Sbjct: 1   MYAVTVETSCTKGADTSNHVSLRFGDTNSNDIVVRRLNSKHVRRVDPLEPQVLDDISRKP 60

Query: 92  FQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP 151
           FQVCMVDQFQVTGKCVTSPICYLYLKL+GADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP
Sbjct: 61  FQVCMVDQFQVTGKCVTSPICYLYLKLSGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLP 120

Query: 152 RHVWHGFDTCPGEVTPFGIKRNRK 176
           RHVWHGFDTCPGEVTPFGIKRNRK
Sbjct: 121 RHVWHGFDTCPGEVTPFGIKRNRK 144

[Close]

BLAST of Lsi10G013240 vs. ExPASy TrEMBL
Match: A0A6J1L2N6 (embryo-specific protein ATS3A-like OS=Cucurbita maxima OX=3661 GN=LOC111499859 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.4e-77
Identity = 145/179 (81.01%), Postives = 153/179 (85.47%), Query Frame = 0


Query: 1   MANSGGKSPAFYPLLLFSLLSAAH---SKLQKSCMYAVTVETTCTKGADTSNHVSLRFGD 60
           M  SGG +P F  LLL SLL+A +   S  +K+CMYAVTVETTCTKGADTSNHVSLRFGD
Sbjct: 1   MPFSGGTAPPFCALLLLSLLAAGNCLASTHEKACMYAVTVETTCTKGADTSNHVSLRFGD 60

Query: 61  TNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKPFQVCMVDQFQVTGKCVTSPICYLYLK 120
           TNSNDIVV  LNSKHVRRVD LEPQVLDDM RKPFQ CMVD FQVT KCVTSPICYLYLK
Sbjct: 61  TNSNDIVVGHLNSKHVRRVDSLEPQVLDDMPRKPFQACMVDHFQVTAKCVTSPICYLYLK 120

Query: 121 LAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFGIKRNRKV 177
           +AGADDWRPGFV VR LE PHLSSN FYFRRVLPRHVWHG DTC G+VTPFGIKR+RKV
Sbjct: 121 VAGADDWRPGFVHVRLLESPHLSSNNFYFRRVLPRHVWHGLDTCRGDVTPFGIKRSRKV 179

[Close]

BLAST of Lsi10G013240 vs. NCBI nr
Match: XP_004148245.1 (embryo-specific protein ATS3A isoform X1 [Cucumis sativus])

HSP 1 Score: 332.8 bits (852), Expect = 1.8e-87
Identity = 159/180 (88.33%), Postives = 166/180 (92.22%), Query Frame = 0


Query: 1   MANSGGKSPAFYPLLLFSLLSAAHSKL----QKSCMYAVTVETTCTKGADTSNHVSLRFG 60
           MANSG  SP F  LLLFSLLSA H  L    QK+CMYAVTVET+CTKGADTSNHVSLRFG
Sbjct: 1   MANSGRTSPPFIALLLFSLLSATHCLLHNDKQKNCMYAVTVETSCTKGADTSNHVSLRFG 60

Query: 61  DTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKPFQVCMVDQFQVTGKCVTSPICYLYL 120
           DTNSNDIVV+RLN KHVRRVDPLEPQVLDD+SRKPFQVCMVDQFQVTGKCVTSPICYLYL
Sbjct: 61  DTNSNDIVVRRLNLKHVRRVDPLEPQVLDDVSRKPFQVCMVDQFQVTGKCVTSPICYLYL 120

Query: 121 KLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFGIKRNRKV 177
           KL+G DDWRPGFVQVRSL+GPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFG+KRNRKV
Sbjct: 121 KLSGTDDWRPGFVQVRSLKGPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFGMKRNRKV 180

[Close]

BLAST of Lsi10G013240 vs. NCBI nr
Match: XP_008463858.1 (PREDICTED: uncharacterized protein LOC103501893 [Cucumis melo])

HSP 1 Score: 332.8 bits (852), Expect = 1.8e-87
Identity = 159/180 (88.33%), Postives = 167/180 (92.78%), Query Frame = 0


Query: 1   MANSGGKSPAFYPLLLFSLLSAAHSKL----QKSCMYAVTVETTCTKGADTSNHVSLRFG 60
           MA + G  P F+ LLLFSLLSA H  L    +K+CMYAVTVET+CTKGADTSNHVSLRFG
Sbjct: 1   MAYTRGTWPPFFALLLFSLLSATHCLLGNDKEKNCMYAVTVETSCTKGADTSNHVSLRFG 60

Query: 61  DTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKPFQVCMVDQFQVTGKCVTSPICYLYL 120
           DTNSNDIVV+RLNSKHVRRVDPLEPQVLDD+SRKPFQVCMVDQFQVTGKCVTSPICYLYL
Sbjct: 61  DTNSNDIVVRRLNSKHVRRVDPLEPQVLDDISRKPFQVCMVDQFQVTGKCVTSPICYLYL 120

Query: 121 KLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFGIKRNRKV 177
           KL+GADDWRPGFVQVRSLEGPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFGIKRNRKV
Sbjct: 121 KLSGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFGIKRNRKV 180

[Close]

BLAST of Lsi10G013240 vs. NCBI nr
Match: XP_011657238.1 (embryo-specific protein ATS3A isoform X2 [Cucumis sativus] >KGN47335.1 hypothetical protein Csa_022990 [Cucumis sativus])

HSP 1 Score: 331.6 bits (849), Expect = 4.0e-87
Identity = 158/179 (88.27%), Postives = 166/179 (92.74%), Query Frame = 0


Query: 1   MANSGGKSPAFYPLLLFSLLSAAHSKL---QKSCMYAVTVETTCTKGADTSNHVSLRFGD 60
           MANSG  SP F  LLLFSLLSA H  L   +K+CMYAVTVET+CTKGADTSNHVSLRFGD
Sbjct: 1   MANSGRTSPPFIALLLFSLLSATHCLLHNDKKNCMYAVTVETSCTKGADTSNHVSLRFGD 60

Query: 61  TNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKPFQVCMVDQFQVTGKCVTSPICYLYLK 120
           TNSNDIVV+RLN KHVRRVDPLEPQVLDD+SRKPFQVCMVDQFQVTGKCVTSPICYLYLK
Sbjct: 61  TNSNDIVVRRLNLKHVRRVDPLEPQVLDDVSRKPFQVCMVDQFQVTGKCVTSPICYLYLK 120

Query: 121 LAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFGIKRNRKV 177
           L+G DDWRPGFVQVRSL+GPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFG+KRNRKV
Sbjct: 121 LSGTDDWRPGFVQVRSLKGPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFGMKRNRKV 179

[Close]

BLAST of Lsi10G013240 vs. NCBI nr
Match: XP_038902188.1 (embryo-specific protein ATS3A-like [Benincasa hispida])

HSP 1 Score: 328.2 bits (840), Expect = 4.4e-86
Identity = 159/181 (87.85%), Postives = 165/181 (91.16%), Query Frame = 0


Query: 1   MANSGGKSPAFYP--LLLFSLLSAAHSKL---QKSCMYAVTVETTCTKGADTSNHVSLRF 60
           MA+SGG S  FY   LLLFSLLS  H  +   +K+CMYAVTVETTCTKGADTSNHVSLRF
Sbjct: 1   MADSGGTSSTFYVLLLLLFSLLSTTHCFVPDDKKNCMYAVTVETTCTKGADTSNHVSLRF 60

Query: 61  GDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKPFQVCMVDQFQVTGKCVTSPICYLY 120
           GDTNSNDIVV+RLNSK VRRVDPL+PQVLDDMSRKPFQ CMVDQFQVTGKCVTSPICYLY
Sbjct: 61  GDTNSNDIVVRRLNSKQVRRVDPLQPQVLDDMSRKPFQACMVDQFQVTGKCVTSPICYLY 120

Query: 121 LKLAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFGIKRNRK 177
           LKL GADDWRPGFVQVRSLEGPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFGIKRNRK
Sbjct: 121 LKLVGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFGIKRNRK 180

[Close]

BLAST of Lsi10G013240 vs. NCBI nr
Match: XP_022146261.1 (embryo-specific protein ATS3A-like [Momordica charantia])

HSP 1 Score: 320.9 bits (821), Expect = 7.1e-84
Identity = 151/179 (84.36%), Postives = 162/179 (90.50%), Query Frame = 0


Query: 1   MANSGGKSPAFYPLLLFSLLSAAHSKLQ---KSCMYAVTVETTCTKGADTSNHVSLRFGD 60
           M NSGG  P+FY +LL SLLSA  S +    K+CMYAVTVETTCTKGADTSNHVSLRFGD
Sbjct: 1   MGNSGGTPPSFYAVLLISLLSAGESLVSNDTKTCMYAVTVETTCTKGADTSNHVSLRFGD 60

Query: 61  TNSNDIVVKRLNSKHVRRVDPLEPQVLDDMSRKPFQVCMVDQFQVTGKCVTSPICYLYLK 120
           TNSNDIVV+RLNS HV+RVDPLEP+VLDDMSRKPFQ CMVDQFQVTGKCVTSP+CY+YLK
Sbjct: 61  TNSNDIVVRRLNSMHVKRVDPLEPEVLDDMSRKPFQACMVDQFQVTGKCVTSPVCYVYLK 120

Query: 121 LAGADDWRPGFVQVRSLEGPHLSSNYFYFRRVLPRHVWHGFDTCPGEVTPFGIKRNRKV 177
           LAGADDWRPGFV+VRSLEGPHLSS YFYFRRVLPRHVWHGFDTC GEVTPFGIK +RKV
Sbjct: 121 LAGADDWRPGFVKVRSLEGPHLSSGYFYFRRVLPRHVWHGFDTCGGEVTPFGIKHHRKV 179

[Close]

BLAST of Lsi10G013240 vs. TAIR 10
Match: AT2G41475.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 92.0 bits (227), Expect = 5.0e-19
Identity = 48/151 (31.79%), Postives = 78/151 (51.66%), Query Frame = 0


Query: 13  PLLLFSLLSAAHSKLQKSCMYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKH 72
           PL + S +     +   +C Y V ++T+C+  + T + +S+ FGD   N++ VKR     
Sbjct: 30  PLPIDSFIPKPKLENAAACSYTVIIKTSCSSVSYTRDKISISFGDVYGNEVYVKR----- 89

Query: 73  VRRVDPLEPQVLDDMSRKPFQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVR 132
                      LDD S + F+ C  D ++++G C+   +CYLYL   G+D W+P  V++ 
Sbjct: 90  -----------LDDPSSRTFEKCSSDTYKISGPCMRD-VCYLYLLRQGSDGWKPENVKI- 149

Query: 133 SLEGPHLSSNYFYFRRVLPRHVWHGFDTCPG 164
              G  + S  FY+   LP  VW+GF+ C G
Sbjct: 150 --YGSSIRSVTFYYNLFLPNSVWYGFNVCNG 160

[Close]

BLAST of Lsi10G013240 vs. TAIR 10
Match: AT5G62200.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-16
Identity = 49/152 (32.24%), Postives = 71/152 (46.71%), Query Frame = 0


Query: 26  KLQKSCMYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLD 85
           KL  +C Y V + T+C+    T + +S+ FGD   N I   R                LD
Sbjct: 43  KLGNTCAYTVIISTSCSSTRYTRDQISVAFGDGYGNQIYAPR----------------LD 102

Query: 86  DMSRKPFQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFY 145
           D S K F+ C  D FQ+ G C T  ICY+YL  +G D W P  V++ S     ++   F 
Sbjct: 103 DPSTKTFEQCSSDTFQINGPC-TYQICYVYLYRSGPDGWIPNTVKIYSHGSKAVT---FP 162

Query: 146 FRRVLPRHVWHGFDTC----PGEVTPFGIKRN 174
           +   +P  VW+GF+ C       V   G++R+
Sbjct: 163 YNTYVPESVWYGFNYCNSASDSNVLAIGLRRS 174

[Close]

BLAST of Lsi10G013240 vs. TAIR 10
Match: AT5G62210.1 (Embryo-specific protein 3, (ATS3) )

HSP 1 Score: 68.2 bits (165), Expect = 7.7e-12
Identity = 47/150 (31.33%), Postives = 73/150 (48.67%), Query Frame = 0


Query: 13  PLLLFS-LLSAAHSKLQKSCMYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSK 72
           P L F  L+S+     ++SC Y V V T+C     + + V++  GD + N +V  RL+  
Sbjct: 21  PSLTFEPLISSLDLHEEESCPYTVIVTTSCFSPDWSRDQVTIALGDADDNQVVAPRLDK- 80

Query: 73  HVRRVDPLEPQVLDDMSRKPFQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQV 132
                 PL            F+ C  D FQV GKC+ + IC +Y+  +G D W P  V++
Sbjct: 81  ------PLS-------GGGGFEKCSSDTFQVKGKCLNT-ICSVYIYRSGTDGWIPETVEI 140

Query: 133 RSLEGPHLSSNYFYFRRVLPRHVWHGFDTC 162
              EG    S  F F + +P ++W+G + C
Sbjct: 141 YK-EGS--KSVKFDFNKNVPENIWYGNNYC 152

[Close]

BLAST of Lsi10G013240 vs. TAIR 10
Match: AT5G07190.1 (seed gene 3 )

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-11
Identity = 41/137 (29.93%), Postives = 63/137 (45.99%), Query Frame = 0


Query: 28  QKSCMYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDM 87
           Q +C Y V V T+C     T + +S+ FGD + N +   +L                  +
Sbjct: 31  QGTCPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGG----------------L 90

Query: 88  SRKP--FQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFY 147
            R P     C  + FQV G+C+  PIC LY+   G D W P  +++ S EG    S  F 
Sbjct: 91  VRGPGGLGKCSTNTFQVRGQCLNDPICSLYINRNGPDGWVPESIEIYS-EGS--KSVKFD 148

Query: 148 FRRVLPR-HVWHGFDTC 162
           F + +P+ + W+G + C
Sbjct: 151 FSKSVPQLNTWYGHNNC 148

[Close]

BLAST of Lsi10G013240 vs. TAIR 10
Match: AT5G07190.2 (seed gene 3 )

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-11
Identity = 41/137 (29.93%), Postives = 63/137 (45.99%), Query Frame = 0


Query: 28  QKSCMYAVTVETTCTKGADTSNHVSLRFGDTNSNDIVVKRLNSKHVRRVDPLEPQVLDDM 87
           Q +C Y V V T+C     T + +S+ FGD + N +   +L                  +
Sbjct: 3   QGTCPYTVVVMTSCLSPESTRDQISIVFGDADGNKVYAPKLGG----------------L 62

Query: 88  SRKP--FQVCMVDQFQVTGKCVTSPICYLYLKLAGADDWRPGFVQVRSLEGPHLSSNYFY 147
            R P     C  + FQV G+C+  PIC LY+   G D W P  +++ S EG    S  F 
Sbjct: 63  VRGPGGLGKCSTNTFQVRGQCLNDPICSLYINRNGPDGWVPESIEIYS-EGS--KSVKFD 120

Query: 148 FRRVLPR-HVWHGFDTC 162
           F + +P+ + W+G + C
Sbjct: 123 FSKSVPQLNTWYGHNNC 120

The following BLAST results are available for this feature:

BLAST of Lsi10G013240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q681K2	7.0e-18	31.79	Embryo-specific protein ATS3A OS=Arabidopsis thaliana OX=3702 GN=ATS3A PE=1 SV=1	[more]
Q6NPM5	1.5e-15	32.24	Embryo-specific protein ATS3B OS=Arabidopsis thaliana OX=3702 GN=ATS3B PE=1 SV=1	[more]
Q9LYP6	2.4e-10	29.93	Embryo-specific protein ATS3 OS=Arabidopsis thaliana OX=3702 GN=ATS3 PE=2 SV=1	[more]

BLAST of Lsi10G013240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CK61	8.7e-88	88.33	uncharacterized protein LOC103501893 OS=Cucumis melo OX=3656 GN=LOC103501893 PE=...	[more]
A0A0A0KC84	1.9e-87	88.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G301050 PE=4 SV=1	[more]
A0A6J1CYS2	3.4e-84	84.36	embryo-specific protein ATS3A-like OS=Momordica charantia OX=3673 GN=LOC11101551...	[more]
A0A5D3CVS5	2.5e-79	97.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1L2N6	2.4e-77	81.01	embryo-specific protein ATS3A-like OS=Cucurbita maxima OX=3661 GN=LOC111499859 P...	[more]

BLAST of Lsi10G013240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148245.1	1.8e-87	88.33	embryo-specific protein ATS3A isoform X1 [Cucumis sativus]	[more]
XP_008463858.1	1.8e-87	88.33	PREDICTED: uncharacterized protein LOC103501893 [Cucumis melo]	[more]
XP_011657238.1	4.0e-87	88.27	embryo-specific protein ATS3A isoform X2 [Cucumis sativus] >KGN47335.1 hypotheti...	[more]
XP_038902188.1	4.4e-86	87.85	embryo-specific protein ATS3A-like [Benincasa hispida]	[more]
XP_022146261.1	7.1e-84	84.36	embryo-specific protein ATS3A-like [Momordica charantia]	[more]

BLAST of Lsi10G013240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41475.1	5.0e-19	31.79	Embryo-specific protein 3, (ATS3)	[more]
AT5G62200.1	1.0e-16	32.24	Embryo-specific protein 3, (ATS3)	[more]
AT5G62210.1	7.7e-12	31.33	Embryo-specific protein 3, (ATS3)	[more]
AT5G07190.1	1.7e-11	29.93	seed gene 3	[more]
AT5G07190.2	1.7e-11	29.93	seed gene 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010417	Embryo-specific ATS3	PFAM	PF06232	ATS3	coord: 21..161 e-value: 3.0E-45 score: 153.1
None	No IPR available	GENE3D	2.60.60.20	PLAT/LH2 domain	coord: 19..155 e-value: 2.4E-5 score: 26.0
None	No IPR available	PANTHER	PTHR31718:SF30	EMBRYO-SPECIFIC PROTEIN	coord: 14..176
None	No IPR available	PANTHER	PTHR31718	FAMILY NOT NAMED	coord: 14..176
IPR036392	PLAT/LH2 domain superfamily	SUPERFAMILY	49723	Lipase/lipooxygenase domain (PLAT/LH2 domain)	coord: 27..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G013240.1	Lsi10G013240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005515	protein binding