Lsi10G013020 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi10G013020
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptiontRNA-intron lyase
Locationchr10: 17225018 .. 17225737 (+)
RNA-Seq ExpressionLsi10G013020
SyntenyLsi10G013020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCCGAGATGGAAAGGGAAGGGTTCAGAAGCCAAAGCTCTAGCAGATCCCATGTCGAATATTGTACTTCAGCTTCAATCTTCTCTGACACAGTCGGACGCTCAAGGATTATTATCTGGTTCTACTGTACTTTATCAAGCCGATGAAGAACAAACCGATCTTCTTAATCGCTCTTGTTTCGGTCGACCAATTCTTACCGCCGAGAAGGACAAGCAATGGTTTCAATTCGGCATGGAAGAGGCTTTTTACTTGTCCAATCATTTGAATTGCCTCAAAATTGTCGATGGACAAGACTGTGAAAAGAATGTTCAAGAGCTTTGGAAGGATATGAAGTCCCAAAAGCCTACATTCCCTGAGTTTTACATCGCTTATCAACACCTTCGATTGAAGAATTGGGTTGTGAGACCTGGATCTCAATACGGGGTGGATTTTGTGGCTTATCGTCACCATCCAGCTCTTGTTCACTCTGAATTTGCTGTTCTTGTGTTGTCCGAAGGAGGAGGCAGTAATGAAAATGGGCGATTGAGGGTTTGGTCTGATTTTCTATGCACAATTCGGCTTTGTGGAAGTGTTGCAAAAACGCTGCTAGTTCTTACTGTCAATGATAATGGAAGCGGTTTTGTTTCTCCTTCGTGTTTGGACAGTTACTCCATTGAAGAACGCACAGTTACAAGATGGCGTCCAGAACAGTGCCGCGAAAATCCTGCAAGAGTGTGA

mRNA sequence

ATGGGGCCGAGATGGAAAGGGAAGGGTTCAGAAGCCAAAGCTCTAGCAGATCCCATGTCGAATATTGTACTTCAGCTTCAATCTTCTCTGACACAGTCGGACGCTCAAGGATTATTATCTGGTTCTACTGTACTTTATCAAGCCGATGAAGAACAAACCGATCTTCTTAATCGCTCTTGTTTCGGTCGACCAATTCTTACCGCCGAGAAGGACAAGCAATGGTTTCAATTCGGCATGGAAGAGGCTTTTTACTTGTCCAATCATTTGAATTGCCTCAAAATTGTCGATGGACAAGACTGTGAAAAGAATGTTCAAGAGCTTTGGAAGGATATGAAGTCCCAAAAGCCTACATTCCCTGAGTTTTACATCGCTTATCAACACCTTCGATTGAAGAATTGGGTTGTGAGACCTGGATCTCAATACGGGGTGGATTTTGTGGCTTATCGTCACCATCCAGCTCTTGTTCACTCTGAATTTGCTGTTCTTGTGTTGTCCGAAGGAGGAGGCAGTAATGAAAATGGGCGATTGAGGGTTTGGTCTGATTTTCTATGCACAATTCGGCTTTGTGGAAGTGTTGCAAAAACGCTGCTAGTTCTTACTGTCAATGATAATGGAAGCGGTTTTGTTTCTCCTTCGTGTTTGGACAGTTACTCCATTGAAGAACGCACAGTTACAAGATGGCGTCCAGAACAGTGCCGCGAAAATCCTGCAAGAGTGTGA

Coding sequence (CDS)

ATGGGGCCGAGATGGAAAGGGAAGGGTTCAGAAGCCAAAGCTCTAGCAGATCCCATGTCGAATATTGTACTTCAGCTTCAATCTTCTCTGACACAGTCGGACGCTCAAGGATTATTATCTGGTTCTACTGTACTTTATCAAGCCGATGAAGAACAAACCGATCTTCTTAATCGCTCTTGTTTCGGTCGACCAATTCTTACCGCCGAGAAGGACAAGCAATGGTTTCAATTCGGCATGGAAGAGGCTTTTTACTTGTCCAATCATTTGAATTGCCTCAAAATTGTCGATGGACAAGACTGTGAAAAGAATGTTCAAGAGCTTTGGAAGGATATGAAGTCCCAAAAGCCTACATTCCCTGAGTTTTACATCGCTTATCAACACCTTCGATTGAAGAATTGGGTTGTGAGACCTGGATCTCAATACGGGGTGGATTTTGTGGCTTATCGTCACCATCCAGCTCTTGTTCACTCTGAATTTGCTGTTCTTGTGTTGTCCGAAGGAGGAGGCAGTAATGAAAATGGGCGATTGAGGGTTTGGTCTGATTTTCTATGCACAATTCGGCTTTGTGGAAGTGTTGCAAAAACGCTGCTAGTTCTTACTGTCAATGATAATGGAAGCGGTTTTGTTTCTCCTTCGTGTTTGGACAGTTACTCCATTGAAGAACGCACAGTTACAAGATGGCGTCCAGAACAGTGCCGCGAAAATCCTGCAAGAGTGTGA

Protein sequence

MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDCEKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV
Homology
[Close]
BLAST of Lsi10G013020 vs. ExPASy Swiss-Prot
Match: Q9M1E8 (tRNA-splicing endonuclease subunit Sen2-1 OS=Arabidopsis thaliana OX=3702 GN=SEN1 PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.6e-68
Identity = 133/241 (55.19%), Postives = 166/241 (68.88%), Query Frame = 0 

Query: 1   MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSC 60
           M PRWK KG+EAKALA+P+S  V +L+SSLTQ++A G LS   VL   + E+ +LL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCC 60

Query: 61  FGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKI-VDGQDCEKNVQELWKDMKSQKPTFP 120
           FGR ++ AEKDK+W Q   EEAF+L   L C+KI + G+  E  V +LW+ M S K  F 
Sbjct: 61  FGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLENEV-DLWRSMSSFKQDFA 120

Query: 121 EFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVW 180
             Y AY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S GG    N RL+VW
Sbjct: 121 ILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQSIGG----NDRLKVW 180

Query: 181 SDFLCTIRLCGSVAKTLLVLTVND--NGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPA 239
           SD  C++RL GSVAK+LLVL VN   N      P CL+ Y++EE+T+ RW PE  RE+  
Sbjct: 181 SDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSREDET 236

[Close]
BLAST of Lsi10G013020 vs. ExPASy Swiss-Prot
Match: Q9LSS3 (tRNA-splicing endonuclease subunit Sen2-2 OS=Arabidopsis thaliana OX=3702 GN=SEN2 PE=2 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.9e-67
Identity = 127/237 (53.59%), Postives = 165/237 (69.62%), Query Frame = 0 

Query: 1   MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSC 60
           M PRWK KG+EAKALA+P+S  V +LQ SL ++++ G LS   VL   + EQ +LL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCC 60

Query: 61  FGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDCEKNVQELWKDMKSQKPTFPE 120
           FGR +L+AEK K+W Q   EEAF+L  +L C+KI     C +N  + W  MKS++P FP 
Sbjct: 61  FGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFPM 120

Query: 121 FYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWS 180
           F+ AY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV      S ++ RLRVWS
Sbjct: 121 FFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLV-----QSGDSDRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNDN--GSGFVSPSCLDSYSIEERTVTRWRPEQCREN 236
           D  C +RL GSVAKTLL L VN N  G       CL+++++EE+T++RW PE  RE+
Sbjct: 181 DIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSRED 232

[Close]
BLAST of Lsi10G013020 vs. ExPASy Swiss-Prot
Match: Q5Z6B1 (Probable tRNA-splicing endonuclease subunit Sen2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0530700 PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 7.7e-60
Identity = 122/241 (50.62%), Postives = 151/241 (62.66%), Query Frame = 0 

Query: 2   GPRWK----GKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLS--GSTVLYQADEEQTDL 61
           GPRWK    GK   + A A+PMS IV +L++S   S    +LS  G + +     EQ  +
Sbjct: 5   GPRWKKGKDGKDFASLAAANPMSAIVSELKASFISSKPVAILSGPGGSAVLGVGPEQAVI 64

Query: 62  LNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDCEKNVQELWKDMKSQK 121
           LNR+ FG  I  A   K WFQ   EE FYL + LNC+++    + + +  ELW   +S  
Sbjct: 65  LNRAAFGHAIENATAQKHWFQLSPEEVFYLCHALNCIRVDSLDNKQMSEIELWDYFRSGS 124

Query: 122 PTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGG-SNENG 181
            +FPE Y AY HLRLKNWVVR G QYG DFVAYRHHPALVHSEFAV+V+ EG    N  G
Sbjct: 125 ESFPEMYKAYAHLRLKNWVVRSGLQYGADFVAYRHHPALVHSEFAVVVVPEGAEFGNRCG 184

Query: 182 RLRVWSDFLCTIRLCGSVAKTLLVLTVNDNGS-GFVSPSCLDSYSIEERTVTRWRPEQCR 235
           RL VWSD LC +R  GSVAKTLLVLT++ +      SP CL+   + ERT+TRW  +QCR
Sbjct: 185 RLEVWSDLLCALRASGSVAKTLLVLTISSSSKCELSSPDCLEQLVVHERTITRWILQQCR 244

[Close]
BLAST of Lsi10G013020 vs. ExPASy Swiss-Prot
Match: Q9P6Y2 (Probable tRNA-splicing endonuclease subunit tsp-2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=tsp-2 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.3e-10
Identity = 46/152 (30.26%), Postives = 71/152 (46.71%), Query Frame = 0 

Query: 71  DKQWFQFGMEEAFYLSNHLNCLKIVD--GQDCEKNVQELWK------------DMKSQKP 130
           DK+ FQ   EEAF+L+  L  L++VD   +    N Q L K            D  S + 
Sbjct: 444 DKEHFQLAPEEAFFLTFGLGALRVVDPVTEAPISNEQLLIKLRANSYFPPRSVDNLSPED 503

Query: 131 TFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGG------S 190
            F   Y  Y H R   WV R G ++GVD++ Y+  P   HSEF ++V+            
Sbjct: 504 PFLVQYAVYHHFRSLGWVPRHGIKFGVDWIIYQRGPVFDHSEFGIMVVPSFSDPRWSEFE 563

Query: 191 NENGRLRVWSDFLCTIRLCGSVAKTLLVLTVN 203
           +E  + + WS  +   R+   V K+L+++ V+
Sbjct: 564 HEESK-KTWSWLMGVNRVLSHVLKSLVLVYVD 594

[Close]
BLAST of Lsi10G013020 vs. ExPASy Swiss-Prot
Match: Q4JAF4 (tRNA-splicing endonuclease OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) OX=330779 GN=endA PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.6e-09
Identity = 49/172 (28.49%), Postives = 75/172 (43.60%), Query Frame = 0 

Query: 36  QGLLSGSTVLYQADEEQTDLLNRSCFGRPI-----LTAEKDKQWFQFGMEEAFYLSNHLN 95
           QG + G  VL    E+  ++     +G+P+      + E  K+     + EA YLS    
Sbjct: 3   QGEILGDKVLINDVEKAKEIYKLGYYGKPLDITKPKSPEDIKKPLILSLIEALYLSKKKI 62

Query: 96  CLKIVDGQDCEKNVQELWKDMKSQKPTFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRH 155
              I DG+  +  +  L+K      P F   Y  Y+ LR K +VVR G +YG DF  Y  
Sbjct: 63  IEVIRDGKVIDDAL--LYKIGMENIPRFELLYTVYEDLREKKFVVRSGMKYGADFAIYTV 122

Query: 156 HPALVHSEFAVLVLSEGGGSNENGRLRVWSDFLCTIRLCGSVAKTLLVLTVN 203
            P L H+ + V+ + E    + N       + L   R+  S  K L++  VN
Sbjct: 123 APGLEHAPYLVIAIDEEQEISPN-------EILGFGRVSHSTRKNLILSIVN 165

[Close]
BLAST of Lsi10G013020 vs. ExPASy TrEMBL
Match: A0A6J1FWV5 (tRNA-intron lyase OS=Cucurbita moschata OX=3662 GN=LOC111448962 PE=3 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 3.5e-124
Identity = 215/239 (89.96%), Postives = 228/239 (95.40%), Query Frame = 0 

Query: 1   MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSC 60
           MGPRWKGK SEA+ALADPMS IVLQLQSSLTQSDAQGLLSG ++LYQADEEQTDLLNR+C
Sbjct: 44  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRAC 103

Query: 61  FGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDCEKNVQELWKDMKSQKPTFPE 120
           FGR I+TAEKDKQWFQFGMEEAFYLS HLNCLKIVDGQD EKNVQELW+DMKS+K TFPE
Sbjct: 104 FGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDREKNVQELWQDMKSRKATFPE 163

Query: 121 FYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWS 180
           FY+AYQHLR+KNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNEN RLRVWS
Sbjct: 164 FYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWS 223

Query: 181 DFLCTIRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV 240
           DFLCTIRLCGSVAKTLLVL+VNDNGSG VSPSCLD+YSIEERTVTRW PEQCRENP +V
Sbjct: 224 DFLCTIRLCGSVAKTLLVLSVNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV 282

[Close]
BLAST of Lsi10G013020 vs. ExPASy TrEMBL
Match: A0A6J1JBL2 (tRNA-intron lyase OS=Cucurbita maxima OX=3661 GN=LOC111483578 PE=3 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 3.0e-123
Identity = 213/239 (89.12%), Postives = 227/239 (94.98%), Query Frame = 0 

Query: 1   MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSC 60
           M PRWKGK SEA+ALADPMS IVLQLQSSLTQSDAQGLLSG ++LYQADEEQTDLLNR+C
Sbjct: 44  MEPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRAC 103

Query: 61  FGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDCEKNVQELWKDMKSQKPTFPE 120
           FGR I+TA+ DKQWFQFGMEEAFYLS HLNCLKIVDGQD EKNVQELW+DMKSQK TFPE
Sbjct: 104 FGRTIITADMDKQWFQFGMEEAFYLSYHLNCLKIVDGQDREKNVQELWQDMKSQKATFPE 163

Query: 121 FYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWS 180
           FY+AYQHLR+KNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWS
Sbjct: 164 FYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWS 223

Query: 181 DFLCTIRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV 240
           DFLCTIRLCGSVAKTLLVL+VNDNG+G VSPSCLDS+SIEERTVTRW PEQCRENP +V
Sbjct: 224 DFLCTIRLCGSVAKTLLVLSVNDNGNGSVSPSCLDSFSIEERTVTRWSPEQCRENPEKV 282

[Close]
BLAST of Lsi10G013020 vs. ExPASy TrEMBL
Match: A0A0A0KEN4 (tRNA-intron lyase OS=Cucumis sativus OX=3659 GN=Csa_6G290260 PE=3 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 6.2e-121
Identity = 210/239 (87.87%), Postives = 221/239 (92.47%), Query Frame = 0 

Query: 1   MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSC 60
           M PRWKGK SEAKALADP+SN +L LQSS   S+AQGLLSGS +LY ADEEQTDLLNR+C
Sbjct: 43  MAPRWKGKASEAKALADPISNTLLHLQSSFIHSNAQGLLSGSIILYLADEEQTDLLNRTC 102

Query: 61  FGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDCEKNVQELWKDMKSQKPTFPE 120
           FGRPILTAEKDKQWFQFGMEEAFYLS HLNCLKIVDGQDCEKN QELW+ MK+QK TFPE
Sbjct: 103 FGRPILTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPE 162

Query: 121 FYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWS 180
           FYIAY+HLRLKNWVVRPGSQYGVDFVAYRHHP+LVHSEFAVLVL EG  SN NGRLRVWS
Sbjct: 163 FYIAYRHLRLKNWVVRPGSQYGVDFVAYRHHPSLVHSEFAVLVLCEGRDSNGNGRLRVWS 222

Query: 181 DFLCTIRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV 240
           DFLCT+RLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRW PEQCRENPA+V
Sbjct: 223 DFLCTVRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV 281

[Close]
BLAST of Lsi10G013020 vs. ExPASy TrEMBL
Match: A0A6J1CYW3 (tRNA-intron lyase OS=Momordica charantia OX=3673 GN=LOC111015540 PE=3 SV=1)

HSP 1 Score: 442.6 bits (1137), Expect = 1.1e-120
Identity = 213/240 (88.75%), Postives = 225/240 (93.75%), Query Frame = 0 

Query: 1   MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSC 60
           MGPRWKGKGSEAKALADPMS IVLQLQSSLTQSDAQGLLSG +VLYQADEEQTDL NR+C
Sbjct: 1   MGPRWKGKGSEAKALADPMSKIVLQLQSSLTQSDAQGLLSGCSVLYQADEEQTDLFNRAC 60

Query: 61  FGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDCEKNVQELWKDMKSQKPTFPE 120
           FGRPI+TA+KDKQWFQ G+EEAFYLS HL CLKIVDGQDCEKN ++LW+ MKSQK TFPE
Sbjct: 61  FGRPIVTADKDKQWFQLGVEEAFYLSCHLKCLKIVDGQDCEKNAEQLWEYMKSQKATFPE 120

Query: 121 FYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGG-SNENGRLRVW 180
           FY AYQHLR+KNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGG SNENGRLRVW
Sbjct: 121 FYKAYQHLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGDSNENGRLRVW 180

Query: 181 SDFLCTIRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV 240
           SDFLCTIRLCGSVAKTLLVL+VN+NGS  VSPS LDSYSIEERTVTRW PEQCRENPA+V
Sbjct: 181 SDFLCTIRLCGSVAKTLLVLSVNNNGSSSVSPSFLDSYSIEERTVTRWSPEQCRENPAKV 240

[Close]
BLAST of Lsi10G013020 vs. ExPASy TrEMBL
Match: A0A6J1G716 (tRNA-intron lyase OS=Cucurbita moschata OX=3662 GN=LOC111451414 PE=3 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 9.0e-120
Identity = 211/237 (89.03%), Postives = 221/237 (93.25%), Query Frame = 0 

Query: 1   MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSC 60
           MGPRWKGKGSEAKALADP+S IVLQLQSSLTQSDAQGLLS  +VLYQADEEQ +LLNR+C
Sbjct: 1   MGPRWKGKGSEAKALADPVSKIVLQLQSSLTQSDAQGLLSSCSVLYQADEEQAELLNRAC 60

Query: 61  FGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDCEKNVQELWKDMKSQKPTFPE 120
           FGRPI++AEKDKQWFQFGMEEAFYLS +LNCLKIVDGQDCEKN  ELW  MKSQK TFPE
Sbjct: 61  FGRPIVSAEKDKQWFQFGMEEAFYLSYYLNCLKIVDGQDCEKNFDELWLYMKSQKATFPE 120

Query: 121 FYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWS 180
           FY AYQ+LR+KNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG GSNENGRLRVWS
Sbjct: 121 FYKAYQNLRMKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGEGSNENGRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPA 238
           DFLCTIRLCGSVAKTLLVLTVN NG+  VSPSCLDSYSIEERTVTRW PEQCRENPA
Sbjct: 181 DFLCTIRLCGSVAKTLLVLTVNSNGNRSVSPSCLDSYSIEERTVTRWSPEQCRENPA 237

[Close]
BLAST of Lsi10G013020 vs. NCBI nr
Match: XP_038900547.1 (tRNA-splicing endonuclease subunit Sen2-1 [Benincasa hispida] >XP_038900548.1 tRNA-splicing endonuclease subunit Sen2-1 [Benincasa hispida] >XP_038900549.1 tRNA-splicing endonuclease subunit Sen2-1 [Benincasa hispida] >XP_038900550.1 tRNA-splicing endonuclease subunit Sen2-1 [Benincasa hispida] >XP_038900551.1 tRNA-splicing endonuclease subunit Sen2-1 [Benincasa hispida])

HSP 1 Score: 480.7 bits (1236), Expect = 7.3e-132
Identity = 229/239 (95.82%), Postives = 234/239 (97.91%), Query Frame = 0 

Query: 1   MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSC 60
           M PRWKGKGSEAKALADPMSNIVLQLQSSLTQS+AQGLLSGS VLYQADEEQTDLLNR+C
Sbjct: 1   MAPRWKGKGSEAKALADPMSNIVLQLQSSLTQSNAQGLLSGSAVLYQADEEQTDLLNRAC 60

Query: 61  FGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDCEKNVQELWKDMKSQKPTFPE 120
           FGRPILTAEKDKQWFQFGMEEAFYL  HLNCLKIVDGQDCEKNVQELW+DMKSQKPTFPE
Sbjct: 61  FGRPILTAEKDKQWFQFGMEEAFYLLYHLNCLKIVDGQDCEKNVQELWQDMKSQKPTFPE 120

Query: 121 FYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWS 180
           FYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSE+AVLVLSEGGGSNENGRLRVWS
Sbjct: 121 FYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEYAVLVLSEGGGSNENGRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV 240
           DFLCTIRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRW PEQCRENPA+V
Sbjct: 181 DFLCTIRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV 239

[Close]
BLAST of Lsi10G013020 vs. NCBI nr
Match: KAG7010605.1 (tRNA-splicing endonuclease subunit Sen2-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 454.1 bits (1167), Expect = 7.3e-124
Identity = 215/239 (89.96%), Postives = 228/239 (95.40%), Query Frame = 0 

Query: 1   MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSC 60
           MGPRWKGK SEA+ALADPMS IVLQLQSSLTQSDAQGLLSG ++LYQADEEQTDLLNR+C
Sbjct: 1   MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRAC 60

Query: 61  FGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDCEKNVQELWKDMKSQKPTFPE 120
           FGR I+TAEKDKQWFQFGMEEAFYLS HLNCLKIVDGQD EKNVQELW+DMKS+K TFPE
Sbjct: 61  FGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDREKNVQELWQDMKSRKATFPE 120

Query: 121 FYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWS 180
           FY+AYQHLR+KNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNEN RLRVWS
Sbjct: 121 FYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV 240
           DFLCTIRLCGSVAKTLLVL+VNDNGSG VSPSCLD+YSIEERTVTRW PEQCRENP +V
Sbjct: 181 DFLCTIRLCGSVAKTLLVLSVNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV 239

[Close]
BLAST of Lsi10G013020 vs. NCBI nr
Match: XP_022944534.1 (tRNA-splicing endonuclease subunit Sen2-1-like [Cucurbita moschata])

HSP 1 Score: 454.1 bits (1167), Expect = 7.3e-124
Identity = 215/239 (89.96%), Postives = 228/239 (95.40%), Query Frame = 0 

Query: 1   MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSC 60
           MGPRWKGK SEA+ALADPMS IVLQLQSSLTQSDAQGLLSG ++LYQADEEQTDLLNR+C
Sbjct: 44  MGPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRAC 103

Query: 61  FGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDCEKNVQELWKDMKSQKPTFPE 120
           FGR I+TAEKDKQWFQFGMEEAFYLS HLNCLKIVDGQD EKNVQELW+DMKS+K TFPE
Sbjct: 104 FGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDREKNVQELWQDMKSRKATFPE 163

Query: 121 FYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWS 180
           FY+AYQHLR+KNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNEN RLRVWS
Sbjct: 164 FYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWS 223

Query: 181 DFLCTIRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV 240
           DFLCTIRLCGSVAKTLLVL+VNDNGSG VSPSCLD+YSIEERTVTRW PEQCRENP +V
Sbjct: 224 DFLCTIRLCGSVAKTLLVLSVNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV 282

[Close]
BLAST of Lsi10G013020 vs. NCBI nr
Match: KAG6570759.1 (tRNA-splicing endonuclease subunit Sen2-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 451.8 bits (1161), Expect = 3.6e-123
Identity = 214/239 (89.54%), Postives = 227/239 (94.98%), Query Frame = 0 

Query: 1   MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSC 60
           MGPRWKGK SEA+ALADPMS IVLQLQ SLTQSDAQGLLSG ++LYQADEEQTDLLNR+C
Sbjct: 1   MGPRWKGKASEARALADPMSKIVLQLQFSLTQSDAQGLLSGCSILYQADEEQTDLLNRAC 60

Query: 61  FGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDCEKNVQELWKDMKSQKPTFPE 120
           FGR I+TAEKDKQWFQFGMEEAFYLS HLNCLKIVDGQD EKNVQELW+DMKS+K TFPE
Sbjct: 61  FGRTIITAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDREKNVQELWQDMKSRKATFPE 120

Query: 121 FYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWS 180
           FY+AYQHLR+KNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNEN RLRVWS
Sbjct: 121 FYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENVRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV 240
           DFLCTIRLCGSVAKTLLVL+VNDNGSG VSPSCLD+YSIEERTVTRW PEQCRENP +V
Sbjct: 181 DFLCTIRLCGSVAKTLLVLSVNDNGSGSVSPSCLDNYSIEERTVTRWSPEQCRENPEKV 239

[Close]
BLAST of Lsi10G013020 vs. NCBI nr
Match: XP_022985538.1 (tRNA-splicing endonuclease subunit Sen2-1-like [Cucurbita maxima] >XP_022985539.1 tRNA-splicing endonuclease subunit Sen2-1-like [Cucurbita maxima] >XP_022985540.1 tRNA-splicing endonuclease subunit Sen2-1-like [Cucurbita maxima])

HSP 1 Score: 451.1 bits (1159), Expect = 6.2e-123
Identity = 213/239 (89.12%), Postives = 227/239 (94.98%), Query Frame = 0 

Query: 1   MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSC 60
           M PRWKGK SEA+ALADPMS IVLQLQSSLTQSDAQGLLSG ++LYQADEEQTDLLNR+C
Sbjct: 44  MEPRWKGKASEARALADPMSKIVLQLQSSLTQSDAQGLLSGCSILYQADEEQTDLLNRAC 103

Query: 61  FGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDCEKNVQELWKDMKSQKPTFPE 120
           FGR I+TA+ DKQWFQFGMEEAFYLS HLNCLKIVDGQD EKNVQELW+DMKSQK TFPE
Sbjct: 104 FGRTIITADMDKQWFQFGMEEAFYLSYHLNCLKIVDGQDREKNVQELWQDMKSQKATFPE 163

Query: 121 FYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWS 180
           FY+AYQHLR+KNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWS
Sbjct: 164 FYMAYQHLRMKNWIVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWS 223

Query: 181 DFLCTIRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPARV 240
           DFLCTIRLCGSVAKTLLVL+VNDNG+G VSPSCLDS+SIEERTVTRW PEQCRENP +V
Sbjct: 224 DFLCTIRLCGSVAKTLLVLSVNDNGNGSVSPSCLDSFSIEERTVTRWSPEQCRENPEKV 282

[Close]
BLAST of Lsi10G013020 vs. TAIR 10
Match: AT3G45590.1 (splicing endonuclease 1 )

HSP 1 Score: 260.0 bits (663), Expect = 1.9e-69
Identity = 133/241 (55.19%), Postives = 166/241 (68.88%), Query Frame = 0 

Query: 1   MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSC 60
           M PRWK KG+EAKALA+P+S  V +L+SSLTQ++A G LS   VL   + E+ +LL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCC 60

Query: 61  FGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKI-VDGQDCEKNVQELWKDMKSQKPTFP 120
           FGR ++ AEKDK+W Q   EEAF+L   L C+KI + G+  E  V +LW+ M S K  F 
Sbjct: 61  FGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLENEV-DLWRSMSSFKQDFA 120

Query: 121 EFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVW 180
             Y AY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S GG    N RL+VW
Sbjct: 121 ILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQSIGG----NDRLKVW 180

Query: 181 SDFLCTIRLCGSVAKTLLVLTVND--NGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPA 239
           SD  C++RL GSVAK+LLVL VN   N      P CL+ Y++EE+T+ RW PE  RE+  
Sbjct: 181 SDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSREDET 236

[Close]
BLAST of Lsi10G013020 vs. TAIR 10
Match: AT3G45590.2 (splicing endonuclease 1 )

HSP 1 Score: 260.0 bits (663), Expect = 1.9e-69
Identity = 133/241 (55.19%), Postives = 166/241 (68.88%), Query Frame = 0 

Query: 1   MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSC 60
           M PRWK KG+EAKALA+P+S  V +L+SSLTQ++A G LS   VL   + E+ +LL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAELLDRCC 60

Query: 61  FGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKI-VDGQDCEKNVQELWKDMKSQKPTFP 120
           FGR ++ AEKDK+W Q   EEAF+L   L C+KI + G+  E  V +LW+ M S K  F 
Sbjct: 61  FGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLENEV-DLWRSMSSFKQDFA 120

Query: 121 EFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVW 180
             Y AY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S GG    N RL+VW
Sbjct: 121 ILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQSIGG----NDRLKVW 180

Query: 181 SDFLCTIRLCGSVAKTLLVLTVND--NGSGFVSPSCLDSYSIEERTVTRWRPEQCRENPA 239
           SD  C++RL GSVAK+LLVL VN   N      P CL+ Y++EE+T+ RW PE  RE+  
Sbjct: 181 SDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELSREDET 236

[Close]
BLAST of Lsi10G013020 vs. TAIR 10
Match: AT5G60230.1 (splicing endonuclease 2 )

HSP 1 Score: 256.5 bits (654), Expect = 2.1e-68
Identity = 127/237 (53.59%), Postives = 165/237 (69.62%), Query Frame = 0 

Query: 1   MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSC 60
           M PRWK KG+EAKALA+P+S  V +LQ SL ++++ G LS   VL   + EQ +LL+R C
Sbjct: 1   MAPRWKWKGAEAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCC 60

Query: 61  FGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDCEKNVQELWKDMKSQKPTFPE 120
           FGR +L+AEK K+W Q   EEAF+L  +L C+KI     C +N  + W  MKS++P FP 
Sbjct: 61  FGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFPM 120

Query: 121 FYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWS 180
           F+ AY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV      S ++ RLRVWS
Sbjct: 121 FFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLV-----QSGDSDRLRVWS 180

Query: 181 DFLCTIRLCGSVAKTLLVLTVNDN--GSGFVSPSCLDSYSIEERTVTRWRPEQCREN 236
           D  C +RL GSVAKTLL L VN N  G       CL+++++EE+T++RW PE  RE+
Sbjct: 181 DIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSRED 232

[Close]
BLAST of Lsi10G013020 vs. TAIR 10
Match: AT5G60230.2 (splicing endonuclease 2 )

HSP 1 Score: 256.5 bits (654), Expect = 2.1e-68
Identity = 127/237 (53.59%), Postives = 165/237 (69.62%), Query Frame = 0 

Query: 1   MGPRWKGKGSEAKALADPMSNIVLQLQSSLTQSDAQGLLSGSTVLYQADEEQTDLLNRSC 60
           M PRWK KG+EAKALA+P+S  V +LQ SL ++++ G LS   VL   + EQ +LL+R C
Sbjct: 6   MAPRWKWKGAEAKALAEPISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAELLDRCC 65

Query: 61  FGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKIVDGQDCEKNVQELWKDMKSQKPTFPE 120
           FGR +L+AEK K+W Q   EEAF+L  +L C+KI     C +N  + W  MKS++P FP 
Sbjct: 66  FGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSKRPNFPM 125

Query: 121 FYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGGGSNENGRLRVWS 180
           F+ AY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV      S ++ RLRVWS
Sbjct: 126 FFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLV-----QSGDSDRLRVWS 185

Query: 181 DFLCTIRLCGSVAKTLLVLTVNDN--GSGFVSPSCLDSYSIEERTVTRWRPEQCREN 236
           D  C +RL GSVAKTLL L VN N  G       CL+++++EE+T++RW PE  RE+
Sbjct: 186 DIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELSRED 237

[Close]
BLAST of Lsi10G013020 vs. TAIR 10
Match: AT3G45577.1 (tRNA-intron endonucleases )

HSP 1 Score: 84.3 bits (207), Expect = 1.4e-16
Identity = 46/99 (46.46%), Postives = 58/99 (58.59%), Query Frame = 0 

Query: 35  AQGLLSGSTVLYQADEEQTDLLNRSCFGRPILTAEKDKQWFQFGMEEAFYLSNHLNCLKI 94
           A G LS   V      EQ +LL+R CFGR +  AEKDK+W Q   EEAF+L   L C+KI
Sbjct: 24  ALGFLSSCNVFL---SEQAELLDRYCFGRLVFGAEKDKRWIQLSYEEAFFLFYKLKCIKI 83

Query: 95  -VDGQDCEKNVQELWKDMKSQKPTFPEFYIAYQHLRLKN 133
            + G+     V +LW+ ++S KP F   Y AY HLR KN
Sbjct: 84  SLHGRSLVNGV-DLWRSIRSFKPNFTILYKAYSHLRSKN 118

The following BLAST results are available for this feature:
BLAST of Lsi10G013020 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M1E82.6e-6855.19tRNA-splicing endonuclease subunit Sen2-1 OS=Arabidopsis thaliana OX=3702 GN=SEN... [more]
Q9LSS32.9e-6753.59tRNA-splicing endonuclease subunit Sen2-2 OS=Arabidopsis thaliana OX=3702 GN=SEN... [more]
Q5Z6B17.7e-6050.62Probable tRNA-splicing endonuclease subunit Sen2 OS=Oryza sativa subsp. japonica... [more]
Q9P6Y24.3e-1030.26Probable tRNA-splicing endonuclease subunit tsp-2 OS=Neurospora crassa (strain A... [more]
Q4JAF43.6e-0928.49tRNA-splicing endonuclease OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM... [more]
BLAST of Lsi10G013020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FWV53.5e-12489.96tRNA-intron lyase OS=Cucurbita moschata OX=3662 GN=LOC111448962 PE=3 SV=1[more]
A0A6J1JBL23.0e-12389.12tRNA-intron lyase OS=Cucurbita maxima OX=3661 GN=LOC111483578 PE=3 SV=1[more]
A0A0A0KEN46.2e-12187.87tRNA-intron lyase OS=Cucumis sativus OX=3659 GN=Csa_6G290260 PE=3 SV=1[more]
A0A6J1CYW31.1e-12088.75tRNA-intron lyase OS=Momordica charantia OX=3673 GN=LOC111015540 PE=3 SV=1[more]
A0A6J1G7169.0e-12089.03tRNA-intron lyase OS=Cucurbita moschata OX=3662 GN=LOC111451414 PE=3 SV=1[more]
BLAST of Lsi10G013020 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038900547.17.3e-13295.82tRNA-splicing endonuclease subunit Sen2-1 [Benincasa hispida] >XP_038900548.1 tR... [more]
KAG7010605.17.3e-12489.96tRNA-splicing endonuclease subunit Sen2-1, partial [Cucurbita argyrosperma subsp... [more]
XP_022944534.17.3e-12489.96tRNA-splicing endonuclease subunit Sen2-1-like [Cucurbita moschata][more]
KAG6570759.13.6e-12389.54tRNA-splicing endonuclease subunit Sen2-1, partial [Cucurbita argyrosperma subsp... [more]
XP_022985538.16.2e-12389.12tRNA-splicing endonuclease subunit Sen2-1-like [Cucurbita maxima] >XP_022985539.... [more]
BLAST of Lsi10G013020 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G45590.11.9e-6955.19splicing endonuclease 1 [more]
AT3G45590.21.9e-6955.19splicing endonuclease 1 [more]
AT5G60230.12.1e-6853.59splicing endonuclease 2 [more]
AT5G60230.22.1e-6853.59splicing endonuclease 2 [more]
AT3G45577.11.4e-1646.46tRNA-intron endonucleases [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011856tRNA endonuclease-like domain superfamilyGENE3D3.40.1350.10coord: 116..214
e-value: 1.3E-23
score: 84.8
IPR006678tRNA intron endonuclease, N-terminalPFAMPF02778tRNA_int_endo_Ncoord: 36..108
e-value: 5.3E-12
score: 45.2
IPR006677tRNA intron endonuclease, catalytic domain-likePFAMPF01974tRNA_int_endocoord: 122..205
e-value: 2.0E-20
score: 72.6
NoneNo IPR availablePANTHERPTHR21227:SF2TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2-1-LIKEcoord: 1..237
IPR006676tRNA-splicing endonucleasePANTHERPTHR21227TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2coord: 1..237
IPR036167tRNA intron endonuclease, catalytic domain-like superfamilySUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 116..206

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G013020.1Lsi10G013020.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0000379 tRNA-type intron splice site recognition and cleavage
biological_process GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation
cellular_component GO:0000214 tRNA-intron endonuclease complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000213 tRNA-intron endonuclease activity
molecular_function GO:0004518 nuclease activity