Lsi10G012870 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G012870
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr10: 17111535 .. 17112268 (+)
RNA-Seq Expression	Lsi10G012870
Synteny	Lsi10G012870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTGGCACCAAAGGCCCCTCAAAAAGCCCCAAAAACCAAACCTATGCTTTAGATTCTTTATTCTCTCTCTTTTGTTCTTCTTTCTGTTTTTCTCCATCAAACAACTGAAACTGTAATTCCTCTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTGTCAGAGAAATGCAGTCCAAGATTGGATCTCAAGGTCTTCCTCTCTGTGTTTCAGGCTTCACTCTCTCTAATCATTCCCTCTCTACTGAGTATGTTTCCTTAATCCCTTCCTAGTTTTTCTCTTTCTCTGAATACATAAACTGTATTATTATGTTGCTCTGTTTTTTGTGGGTTTTAGGATGGCAGATCATGATCGAAGGAGGGAAGCCATGAGAAAGAGAATGCAAAGATCAAGAAACATGGAGGAATACAGGTTGTTGGAAGCGATTAGAGAGGGAGATCTTGAGAATTTCGTCAATGAATTGTATGAAACCAACTTAATTTGTGCTGCAAAAGCTGCTTAGATTAGAAAAAAACAGAGTCTATGATCTGGGTTTGGTTGGAATTGGATCTGTCTCTTTTCGTATATTTTGTCAATTTCTGATCTGGGTTTGTTTTATGTATTATTCTTGTTTGATCTGAAATGGGATTTGTTTATGTACTTTGTGAAGAGAGAAAATGGAATATTGTGGATTATTTGGCTCTAAATGGTTAAAAATTTGACTTGTTATGGATGGAAGCTAGAATAAATTCAA

mRNA sequence

ATCTGGCACCAAAGGCCCCTCAAAAAGCCCCAAAAACCAAACCTATGCTTTAGATTCTTTATTCTCTCTCTTTTGTTCTTCTTTCTGTTTTTCTCCATCAAACAACTGAAACTGTAATTCCTCTGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTGTCAGAGAAATGCAGTCCAAGATTGGATCTCAAGGTCTTCCTCTCTGTGTTTCAGGCTTCACTCTCTCTAATCATTCCCTCTCTACTGAGATGGCAGATCATGATCGAAGGAGGGAAGCCATGAGAAAGAGAATGCAAAGATCAAGAAACATGGAGGAATACAGGTTGTTGGAAGCGATTAGAGAGGGAGATCTTGAGAATTTCGTCAATGAATTGTATGAAACCAACTTAATTTGTGCTGCAAAAGCTGCTTAGATTAGAAAAAAACAGAGTCTATGATCTGGGTTTGGTTGGAATTGGATCTGTCTCTTTTCGTATATTTTGTCAATTTCTGATCTGGGTTTGTTTTATGTATTATTCTTGTTTGATCTGAAATGGGATTTGTTTATGTACTTTGTGAAGAGAGAAAATGGAATATTGTGGATTATTTGGCTCTAAATGGTTAAAAATTTGACTTGTTATGGATGGAAGCTAGAATAAATTCAA

Coding sequence (CDS)

ATGCAGTCCAAGATTGGATCTCAAGGTCTTCCTCTCTGTGTTTCAGGCTTCACTCTCTCTAATCATTCCCTCTCTACTGAGATGGCAGATCATGATCGAAGGAGGGAAGCCATGAGAAAGAGAATGCAAAGATCAAGAAACATGGAGGAATACAGGTTGTTGGAAGCGATTAGAGAGGGAGATCTTGAGAATTTCGTCAATGAATTGTATGAAACCAACTTAATTTGTGCTGCAAAAGCTGCTTAG

Protein sequence

MQSKIGSQGLPLCVSGFTLSNHSLSTEMADHDRRREAMRKRMQRSRNMEEYRLLEAIREGDLENFVNELYETNLICAAKAA

Homology

[Close]

BLAST of Lsi10G012870 vs. ExPASy TrEMBL
Match: A0A5D3CSY7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00460 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.3e-22
Identity = 63/81 (77.78%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCVSGFTLSNHSLSTEMADHDRRREAMRKRMQRSRNMEEYRLLEAIREG 60
          MQSKIGSQGLPLC+S FTLSNHSLST++ADHDRRREAM+ R QRS NM +YR LEAIREG
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNM-KYRYLEAIREG 60

Query: 61 DLENFVNELYETNLICAAKAA 82
          DLE+FVNE     +ICAAKAA
Sbjct: 61 DLEDFVNE--TDFMICAAKAA 78

[Close]

BLAST of Lsi10G012870 vs. ExPASy TrEMBL
Match: A0A0A0KEP9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G290900 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.8e-22
Identity = 62/81 (76.54%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCVSGFTLSNHSLSTEMADHDRRREAMRKRMQRSRNMEEYRLLEAIREG 60
          MQSKIGSQGLPLC+S FTLSNHSLST++ADHDRRREAM+ R +RS NM ++RLLEAIREG
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNM-KHRLLEAIREG 60

Query: 61 DLENFVNELYETNLICAAKAA 82
          DLE+FVNE     +ICAAKAA
Sbjct: 61 DLEDFVNE--NDLMICAAKAA 78

[Close]

BLAST of Lsi10G012870 vs. ExPASy TrEMBL
Match: A0A6J1L6A3 (uncharacterized protein LOC111499567 OS=Cucurbita maxima OX=3661 GN=LOC111499567 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.2e-09
Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCVSGFTLSNHSLSTEMADHDRRREAMRKRMQRSRN-----MEEYRLLE 60
          M SK+ S GLPLC+SGF+LS+ SLSTEM DHDRRREAMR+R   S +        Y +++
Sbjct: 1  MPSKLVSPGLPLCLSGFSLSHRSLSTEMEDHDRRREAMRRRRSSSADAGGIGFTRY-IIQ 60

Query: 61 AIREGDLENFVNELYETNLICAAKAA 82
          AI +GDL +      +T L  AAKAA
Sbjct: 61 AIGDGDLHDLCE---KTKLTSAAKAA 82

[Close]

BLAST of Lsi10G012870 vs. ExPASy TrEMBL
Match: D7SKV1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g03210 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.6e-06
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 6  GSQGLPLCVSGFTLSNHSLSTEMADHDRRREAMRKRMQRSR-----NME-----EY-RLL 65
          GS GLPLCVSG T   H++S EMADHDRRREAM++++ ++R     N E      Y R +
Sbjct: 8  GSYGLPLCVSGIT-HRHTVSDEMADHDRRREAMKRKISQARESVHTNQEMGIGRNYGREV 67

Query: 66 EAIREGDLENFVNELYETNLICAAKAA 82
          E I+EG+++   ++ Y   L C AKAA
Sbjct: 68 EQIKEGEVDE-DHDHYRPCLACTAKAA 92

[Close]

BLAST of Lsi10G012870 vs. ExPASy TrEMBL
Match: A0A314UD00 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_10266 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 44/99 (44.44%), Postives = 58/99 (58.59%), Query Frame = 0


Query: 1  MQSKI---GSQGLPLCVSGFTLSNHSLSTEMADHDRRREAMRKRMQRSR-----NME--- 60
          MQS +   G+ GLPLCVSG T  + + S EMADHDRRREAM+++  ++R     N E   
Sbjct: 1  MQSMLNLHGTFGLPLCVSGITHHHLTFSEEMADHDRRREAMKRQRSQARAELHANQELGF 60

Query: 61 ---EYRLLEAIREG----DLENFVNELYETNLICAAKAA 82
               R+ E IREG    DL + +++L    L C AKAA
Sbjct: 61 ERSSGRVGEQIREGGVDEDLASLLHDLCCCYLACTAKAA 99

[Close]

BLAST of Lsi10G012870 vs. NCBI nr
Match: KAA0035320.1 (hypothetical protein E6C27_scaffold228G001200 [Cucumis melo var. makuwa] >TYK14318.1 hypothetical protein E5676_scaffold84G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 2.7e-22
Identity = 63/81 (77.78%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCVSGFTLSNHSLSTEMADHDRRREAMRKRMQRSRNMEEYRLLEAIREG 60
          MQSKIGSQGLPLC+S FTLSNHSLST++ADHDRRREAM+ R QRS NM +YR LEAIREG
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTQRSNNM-KYRYLEAIREG 60

Query: 61 DLENFVNELYETNLICAAKAA 82
          DLE+FVNE     +ICAAKAA
Sbjct: 61 DLEDFVNE--TDFMICAAKAA 78

[Close]

BLAST of Lsi10G012870 vs. NCBI nr
Match: KGN47309.1 (hypothetical protein Csa_022984 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 7.9e-22
Identity = 62/81 (76.54%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCVSGFTLSNHSLSTEMADHDRRREAMRKRMQRSRNMEEYRLLEAIREG 60
          MQSKIGSQGLPLC+S FTLSNHSLST++ADHDRRREAM+ R +RS NM ++RLLEAIREG
Sbjct: 1  MQSKIGSQGLPLCISAFTLSNHSLSTQIADHDRRREAMKTRTKRSSNM-KHRLLEAIREG 60

Query: 61 DLENFVNELYETNLICAAKAA 82
          DLE+FVNE     +ICAAKAA
Sbjct: 61 DLEDFVNE--NDLMICAAKAA 78

[Close]

BLAST of Lsi10G012870 vs. NCBI nr
Match: XP_023006923.1 (uncharacterized protein LOC111499567 [Cucurbita maxima])

HSP 1 Score: 71.2 bits (173), Expect = 4.5e-09
Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCVSGFTLSNHSLSTEMADHDRRREAMRKRMQRSRN-----MEEYRLLE 60
          M SK+ S GLPLC+SGF+LS+ SLSTEM DHDRRREAMR+R   S +        Y +++
Sbjct: 1  MPSKLVSPGLPLCLSGFSLSHRSLSTEMEDHDRRREAMRRRRSSSADAGGIGFTRY-IIQ 60

Query: 61 AIREGDLENFVNELYETNLICAAKAA 82
          AI +GDL +      +T L  AAKAA
Sbjct: 61 AIGDGDLHDLCE---KTKLTSAAKAA 82

[Close]

BLAST of Lsi10G012870 vs. NCBI nr
Match: KAG6605527.1 (hypothetical protein SDJN03_02844, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035464.1 hypothetical protein SDJN02_02260 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.2 bits (165), Expect = 3.8e-08
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCVSGFTLSNHSLSTEMADHDRRREAMRKRMQRSRN-----MEEYRLLE 60
          M SK+ S GLPLC+SGF+LS+  L+TEM DHDRRREAMR+R   S +        Y +++
Sbjct: 1  MPSKLVSPGLPLCLSGFSLSHRPLTTEMEDHDRRREAMRRRRSSSADTGGIGFTRY-IIQ 60

Query: 61 AIREGDLENFVNELYETNLICAAKAA 82
          AI +GDL +      +T L  AAKAA
Sbjct: 61 AIGDGDLHDLCE---KTKLTSAAKAA 82

[Close]

BLAST of Lsi10G012870 vs. NCBI nr
Match: XP_031265545.1 (uncharacterized protein LOC116123970 [Pistacia vera])

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 44/94 (46.81%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 1  MQSKIGSQGLPLCVSGFTLSNH-SLSTEMADHDRRREAMRKRMQRSRNMEEYRLLE---- 60
          M +  GS GLPLCVSG T S+H +LS EMADHDRRREAM+K+  R R+  +   +E    
Sbjct: 4  MLNLYGSYGLPLCVSGITQSHHLTLSKEMADHDRRREAMKKQRSRGRHANQEMGMERNHA 63

Query: 61 ----AIREG----DLENFVNELYETNLICAAKAA 82
               I EG    DL   + +LY     C AKAA
Sbjct: 64 REVVEITEGEVDEDLACVLQDLYNICSSCTAKAA 97

[Close]

BLAST of Lsi10G012870 vs. TAIR 10
Match: AT5G60400.3 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 6  GSQGLPLCVSGFTLSNHSLSTEMADHDRRREAMRKRMQRSRNMEEYR 53
          G+ G PLC+SG T    SLS EMADHD+RR+ +++R +RS    EY+
Sbjct: 8  GNYGFPLCISGIT-QQLSLSKEMADHDKRRKVIQRR-RRSEGKHEYK 52

The following BLAST results are available for this feature:

BLAST of Lsi10G012870 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi10G012870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CSY7	1.3e-22	77.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KEP9	3.8e-22	76.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G290900 PE=4 SV=1	[more]
A0A6J1L6A3	2.2e-09	52.33	uncharacterized protein LOC111499567 OS=Cucurbita maxima OX=3661 GN=LOC111499567...	[more]
D7SKV1	8.6e-06	47.13	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g03210 PE=4 SV=...	[more]
A0A314UD00	2.5e-05	44.44	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_102...	[more]

BLAST of Lsi10G012870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035320.1	2.7e-22	77.78	hypothetical protein E6C27_scaffold228G001200 [Cucumis melo var. makuwa] >TYK143...	[more]
KGN47309.1	7.9e-22	76.54	hypothetical protein Csa_022984 [Cucumis sativus]	[more]
XP_023006923.1	4.5e-09	52.33	uncharacterized protein LOC111499567 [Cucurbita maxima]	[more]
KAG6605527.1	3.8e-08	50.00	hypothetical protein SDJN03_02844, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_031265545.1	1.2e-06	46.81	uncharacterized protein LOC116123970 [Pistacia vera]	[more]

BLAST of Lsi10G012870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60400.3	1.2e-04	51.06	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G012870.1	Lsi10G012870.1	mRNA