Lsi10G012150 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi10G012150
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-H2 finger protein ATL57-like
Locationchr10: 16422895 .. 16423536 (+)
RNA-Seq ExpressionLsi10G012150
SyntenyLsi10G012150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACACTATTTTTGCCACCGCAAGCTCCTCCTTGAACCTTCCGATTTTGTGAATCTCCCATCGCCCGATCTTCCCCTTCAAACCACCACCCAACAATCCTCTTCTCCTCATTCCTTCAACCTTAAAACGGCCATCGTCCTCCTCGCCATCTTCCTTGTTTTTTTTCTCTTTACCATTTTTTCCATCTACATCCGTCGATTCGTCGAACGCCGTCTCCCTTTTTCTCTGCCGCCGCAGACGGCGGCGGGTTCCTCTGCCAACGGTGTGGACCGGGCCGTTGTTGGGTCGCTTCCGGTTTTTGCTTACCGTCACTACGACAAGTTTCAGGTGGAATGTGCGATTTGTCTGATCGAGTTTGCGGTGGACGAGAGAGTTAAAACGATACCGTTTTGTGGGCACGTGTTTCATCCTGAGTGTATTGACACGTGGCTGTTTTCGCACGTGTCTTGTCCGGTTTGCCGGTCGACGCAATTCTTTTCGAAAAAGGGTGGCGTTCGTGACGGAACGCCGTCCGGAGGAAGATTGACGGTGGAAAATGGTGATATGTGTGTGGAGGTTGGGACACGTGGCGTGAGGAGGATTAGCAGTTGTTCCAATTTTTCTGGGCGAGGTTCTTTGGAAAGAACACTGACCTTTTGA

mRNA sequence

ATGAAACACTATTTTTGCCACCGCAAGCTCCTCCTTGAACCTTCCGATTTTGTGAATCTCCCATCGCCCGATCTTCCCCTTCAAACCACCACCCAACAATCCTCTTCTCCTCATTCCTTCAACCTTAAAACGGCCATCGTCCTCCTCGCCATCTTCCTTGTTTTTTTTCTCTTTACCATTTTTTCCATCTACATCCGTCGATTCGTCGAACGCCGTCTCCCTTTTTCTCTGCCGCCGCAGACGGCGGCGGGTTCCTCTGCCAACGGTGTGGACCGGGCCGTTGTTGGGTCGCTTCCGGTTTTTGCTTACCGTCACTACGACAAGTTTCAGGTGGAATGTGCGATTTGTCTGATCGAGTTTGCGGTGGACGAGAGAGTTAAAACGATACCGTTTTGTGGGCACGTGTTTCATCCTGAGTGTATTGACACGTGGCTGTTTTCGCACGTGTCTTGTCCGGTTTGCCGGTCGACGCAATTCTTTTCGAAAAAGGGTGGCGTTCGTGACGGAACGCCGTCCGGAGGAAGATTGACGGTGGAAAATGGTGATATGTGTGTGGAGGTTGGGACACGTGGCGTGAGGAGGATTAGCAGTTGTTCCAATTTTTCTGGGCGAGGTTCTTTGGAAAGAACACTGACCTTTTGA

Coding sequence (CDS)

ATGAAACACTATTTTTGCCACCGCAAGCTCCTCCTTGAACCTTCCGATTTTGTGAATCTCCCATCGCCCGATCTTCCCCTTCAAACCACCACCCAACAATCCTCTTCTCCTCATTCCTTCAACCTTAAAACGGCCATCGTCCTCCTCGCCATCTTCCTTGTTTTTTTTCTCTTTACCATTTTTTCCATCTACATCCGTCGATTCGTCGAACGCCGTCTCCCTTTTTCTCTGCCGCCGCAGACGGCGGCGGGTTCCTCTGCCAACGGTGTGGACCGGGCCGTTGTTGGGTCGCTTCCGGTTTTTGCTTACCGTCACTACGACAAGTTTCAGGTGGAATGTGCGATTTGTCTGATCGAGTTTGCGGTGGACGAGAGAGTTAAAACGATACCGTTTTGTGGGCACGTGTTTCATCCTGAGTGTATTGACACGTGGCTGTTTTCGCACGTGTCTTGTCCGGTTTGCCGGTCGACGCAATTCTTTTCGAAAAAGGGTGGCGTTCGTGACGGAACGCCGTCCGGAGGAAGATTGACGGTGGAAAATGGTGATATGTGTGTGGAGGTTGGGACACGTGGCGTGAGGAGGATTAGCAGTTGTTCCAATTTTTCTGGGCGAGGTTCTTTGGAAAGAACACTGACCTTTTGA

Protein sequence

MKHYFCHRKLLLEPSDFVNLPSPDLPLQTTTQQSSSPHSFNLKTAIVLLAIFLVFFLFTIFSIYIRRFVERRLPFSLPPQTAAGSSANGVDRAVVGSLPVFAYRHYDKFQVECAICLIEFAVDERVKTIPFCGHVFHPECIDTWLFSHVSCPVCRSTQFFSKKGGVRDGTPSGGRLTVENGDMCVEVGTRGVRRISSCSNFSGRGSLERTLTF
Homology
[Close]
BLAST of Lsi10G012150 vs. ExPASy Swiss-Prot
Match: Q9SJJ7 (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.1e-24
Identity = 74/205 (36.10%), Postives = 99/205 (48.29%), Query Frame = 0 

Query: 29  TTTQQSSSPHSFNLKTAIVLLAIFLVFFLFTIFSIYIRRFVE---RRLPFSLPPQTAAG- 88
           T T     P + +   A+ +  + +  F    FS+Y R F +     +  S  P+T +  
Sbjct: 35  TPTPPPQPPSALDSTMALTIFILLVALFFMGFFSVYFRHFADSSSSTVDISSMPRTRSSR 94

Query: 89  ----------------SSANGVDRAVVGSLPVFAYRHYDKFQVE-CAICLIEFAVDERVK 148
                           S   G+D   V SLPV+ Y    K + E C ICL +F   E VK
Sbjct: 95  MSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAKQRNEDCVICLSDFEEGETVK 154

Query: 149 TIPFCGHVFHPECIDTWLFSHVSCPVCRSTQFFSKKGGVRDGTPSGGRLTVENGDMCVEV 208
            IP CGHVFH +C+DTWL S+V+CP+CRS Q FS K       P   + + E  D C  V
Sbjct: 155 VIPHCGHVFHVDCVDTWLSSYVTCPLCRSNQLFSDKDLGMQEPPD--QDSAEEHDTCDGV 214

Query: 209 GTRGVRRISSCSNFSGRGSLERTLT 213
            T  VRR SSCS+   R  LER+L+
Sbjct: 215 DT-CVRRCSSCSSLGQRTGLERSLS 236

[Close]
BLAST of Lsi10G012150 vs. ExPASy Swiss-Prot
Match: Q8W571 (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3)

HSP 1 Score: 96.7 bits (239), Expect = 3.4e-19
Identity = 72/183 (39.34%), Postives = 92/183 (50.27%), Query Frame = 0 

Query: 33  QSSSPHSFNLKT------AIVLLAIFLVFFLFTIFSIYIRRFVERRLPFS---LPPQTAA 92
           QS SP   +L+T        V   +  +FFL  + S+YIR         S      +   
Sbjct: 29  QSFSPSPPDLQTGHTPSKTTVFAVLVTLFFLTGLLSVYIRHCARSNPDSSTRYFRNRAND 88

Query: 93  GSS-ANGVDRAVVGSLPVFAYRHYDKFQV-----ECAICLIEFAVDERVKTIPFCGHVFH 152
           GSS   G+D AVV S PVFAY    + ++     ECAICL E    E V+ +P C H+FH
Sbjct: 89  GSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFH 148

Query: 153 PECIDTWLFSHVSCPVCRS--TQFFSKKGGVRDGTP-SGGRLTVENGDMCVEVGTRGVRR 198
            +CIDTWL+SH +CPVCRS  T   +K G   DG P +  R  V      VEV     RR
Sbjct: 149 IDCIDTWLYSHATCPVCRSNLTAKSNKPGDEDDGVPLAAMRDHVVVDIETVEVAKSHHRR 208

[Close]
BLAST of Lsi10G012150 vs. ExPASy Swiss-Prot
Match: Q84W40 (RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2)

HSP 1 Score: 96.3 bits (238), Expect = 4.5e-19
Identity = 51/135 (37.78%), Postives = 73/135 (54.07%), Query Frame = 0 

Query: 34  SSSPHSFNLKTAIVLLAIFLVFFLFTIFSIYIRRFVERRLPFSLPPQTAAGS-------S 93
           S     F+   AI+++ +  VFF    FS+YIRR +ER +         AG+        
Sbjct: 53  SGDSSRFDPTMAILMIVLVSVFFFLGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQ 112

Query: 94  ANGVDRAVVGSLPVFAYR-----HYDKFQVECAICLIEFAVDERVKTIPFCGHVFHPECI 153
           A G+D +++ + P F Y         K  +EC++CL EF  DE ++ IP C HVFHP CI
Sbjct: 113 ARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCI 172

Query: 154 DTWLFSHVSCPVCRS 157
           D WL SH +CP+CR+
Sbjct: 173 DAWLRSHTTCPLCRA 187

[Close]
BLAST of Lsi10G012150 vs. ExPASy Swiss-Prot
Match: Q8H7N9 (E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0188200 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.2e-17
Identity = 50/141 (35.46%), Postives = 75/141 (53.19%), Query Frame = 0 

Query: 33  QSSSPHSFNLKTAIVLLAIFLVFFLFTIFSIYIRRFVERRLP--------FSLPP---QT 92
           +S++   F   T +VL+A+   F L T+FS+ I R  + R P         S  P     
Sbjct: 36  RSATAGGFTPTTVVVLVALITAFVLLTVFSVLINRCAQARAPPRRAFRSTASHQPVGGAA 95

Query: 93  AAGSSANGVDRAVVGSLPVFAYRHY------DKFQVECAICLIEFAVDERVKTIPFCGHV 152
           AA  ++ G+D+ VV + P   Y             +ECA+CL EFA  + ++ +P C HV
Sbjct: 96  AASRASRGLDKEVVEAFPTAVYGDVKARMAAKSGPLECAVCLAEFADSDELRVLPACCHV 155

Query: 153 FHPECIDTWLFSHVSCPVCRS 157
           FHP+CID WL + V+CP+CR+
Sbjct: 156 FHPDCIDPWLAAAVTCPLCRA 176

[Close]
BLAST of Lsi10G012150 vs. ExPASy Swiss-Prot
Match: Q9SK92 (E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana OX=3702 GN=ATL15 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.7e-16
Identity = 53/154 (34.42%), Postives = 76/154 (49.35%), Query Frame = 0 

Query: 39  SFNLKTAIVLLAIFLVFFLFTIFSIYIRRFVERRLPFSLPPQTAAGSSAN-------GVD 98
           SF+  TAI+++ +  VFF     S+Y+RR ++  L   +      G+  N       G+D
Sbjct: 34  SFSPTTAIIMIVLVSVFFALGCISVYMRRCLQHAL--GMDSGGGPGNWLNVRQTTEPGLD 93

Query: 99  RAVVGSLPVFAYR-----HYDKFQVECAICLIEFAVDERVKTIPFCGHVFHPECIDTWLF 158
            +V+ + P F Y         K  +EC +CL EF  DE ++ IP C HVFHP CID WL 
Sbjct: 94  ASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLR 153

Query: 159 SHVSCPVCRSTQFFSKKGGVRDGTPSGGRLTVEN 181
           S  +CP+CR+         V    P   R T +N
Sbjct: 154 SQTTCPLCRANLVPVPGESVSSEIPGLARETGQN 185

[Close]
BLAST of Lsi10G012150 vs. ExPASy TrEMBL
Match: A0A5A7T753 (RING-H2 finger protein ATL57-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1754G00230 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.9e-73
Identity = 155/228 (67.98%), Postives = 168/228 (73.68%), Query Frame = 0 

Query: 1   MKHYFCHRKLLLEPSDFVNLPSPDLPL--QTTTQQSSSPHS---------FNLKTAIVLL 60
           MK  F HRKLLLE SD+VNLPSPDLPL  +TTTQ  SS  S         FNLKTA +LL
Sbjct: 1   MKPQFSHRKLLLEASDYVNLPSPDLPLEVETTTQNPSSSRSFKFSQLFPPFNLKTAFILL 60

Query: 61  AIFLVFFLFTIFSIYIRRFVERRLPFS----LPPQTAAGSSANGVDRAVVGSLPVFAYRH 120
            + L+FFLFTIFSIYIRRF ERR PF      PP TAA SSANG+DR VV SLPV +YR 
Sbjct: 61  TLLLLFFLFTIFSIYIRRFAERRYPFPPPPLRPPHTAATSSANGLDRTVVWSLPVSSYRC 120

Query: 121 YDKFQVECAICLIEFAVDERVKTIPFCGHVFHPECIDTWLFSHVSCPVCRSTQFFSKKGG 180
            DK QV+C ICL EF   ERVKTIPFC HVFHP+CID WLFSHVSCPVCRST+F      
Sbjct: 121 DDKLQVDCPICLSEFEAGERVKTIPFCRHVFHPDCIDRWLFSHVSCPVCRSTEF------ 180

Query: 181 VRDGTPSGGRLTVENGDMCVEVGTRGVRRISSCSNFSGRGSLERTLTF 214
             DGT SGGR TV +GD CVEVGTRG+RR SS SNF+GRGSL RTLTF
Sbjct: 181 --DGTASGGRWTVRDGDTCVEVGTRGLRRSSSWSNFAGRGSLGRTLTF 220

[Close]
BLAST of Lsi10G012150 vs. ExPASy TrEMBL
Match: A0A1S4E570 (RING-H2 finger protein ATL57-like OS=Cucumis melo OX=3656 GN=LOC107992155 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.9e-73
Identity = 155/228 (67.98%), Postives = 168/228 (73.68%), Query Frame = 0 

Query: 1   MKHYFCHRKLLLEPSDFVNLPSPDLPL--QTTTQQSSSPHS---------FNLKTAIVLL 60
           MK  F HRKLLLE SD+VNLPSPDLPL  +TTTQ  SS  S         FNLKTA +LL
Sbjct: 1   MKPQFSHRKLLLEASDYVNLPSPDLPLEVETTTQNPSSSRSFKFSQLFPPFNLKTAFILL 60

Query: 61  AIFLVFFLFTIFSIYIRRFVERRLPFS----LPPQTAAGSSANGVDRAVVGSLPVFAYRH 120
            + L+FFLFTIFSIYIRRF ERR PF      PP TAA SSANG+DR VV SLPV +YR 
Sbjct: 61  TLLLLFFLFTIFSIYIRRFAERRYPFPPPPLRPPHTAATSSANGLDRTVVWSLPVSSYRC 120

Query: 121 YDKFQVECAICLIEFAVDERVKTIPFCGHVFHPECIDTWLFSHVSCPVCRSTQFFSKKGG 180
            DK QV+C ICL EF   ERVKTIPFC HVFHP+CID WLFSHVSCPVCRST+F      
Sbjct: 121 DDKLQVDCPICLSEFEAGERVKTIPFCRHVFHPDCIDRWLFSHVSCPVCRSTEF------ 180

Query: 181 VRDGTPSGGRLTVENGDMCVEVGTRGVRRISSCSNFSGRGSLERTLTF 214
             DGT SGGR TV +GD CVEVGTRG+RR SS SNF+GRGSL RTLTF
Sbjct: 181 --DGTASGGRWTVRDGDTCVEVGTRGLRRSSSWSNFAGRGSLGRTLTF 220

[Close]
BLAST of Lsi10G012150 vs. ExPASy TrEMBL
Match: A0A2N9IUR4 (RING-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57019 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.1e-39
Identity = 103/233 (44.21%), Postives = 140/233 (60.09%), Query Frame = 0 

Query: 1   MKHYFCHRKLLLEPSDFVNLPSPDLPLQTTTQQSSSPHSFNLKTAIVLLAIFLVFFLFTI 60
           MK +  +RKLL   S F  + S   P   +  + +  +S      IVL+ +  +     +
Sbjct: 1   MKPHNYNRKLLSTTSFFNAITSSSPPPTLSPNRHTLDNSLTCTLIIVLIGLAFM----GL 60

Query: 61  FSIYIRR----FVERRLPFSLPPQTAAGSS--ANGVDRAVVGSLPVFAYRHYDKFQVECA 120
           ++ Y+RR    F ERR    LPP+T++ +S    GVD   + +LPV++YR   K+Q++CA
Sbjct: 61  YAFYLRRISGNFEERRR--DLPPRTSSSNSNQRKGVDPITIMALPVYSYRGDAKYQIDCA 120

Query: 121 ICLIEFAVDERVKTIPFCGHVFHPECIDTWLFSHVSCPVCRSTQFFSKKGG----VRDG- 180
           ICL EF  +E VK IPFC HVFHPECIDTWL +HV+CPVCRSTQFF  KGG    V++G 
Sbjct: 121 ICLSEFDENEAVKVIPFCKHVFHPECIDTWLSTHVTCPVCRSTQFFEGKGGEGLCVKEGG 180

Query: 181 -----TPSGGRLTVENGDMCVEV----GTRGVRRISSCSNFSGRGSLERTLTF 214
                + SG R TV N D C+E+    G+  VRR SSCSN   RGS++RT +F
Sbjct: 181 CDHGVSGSGERSTVGNNDACIEIRVVMGSFSVRRNSSCSNLGERGSMQRTFSF 227

[Close]
BLAST of Lsi10G012150 vs. ExPASy TrEMBL
Match: A0A0A0KAY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G149360 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 2.2e-37
Identity = 93/145 (64.14%), Postives = 104/145 (71.72%), Query Frame = 0 

Query: 1   MKHYFCHRKLLLEPSDFVNLPSPDLPL--QTTTQQSSSPHS---------FNLKTAIVLL 60
           MK  FCHRKLLLE SD++NLPSPD PL  +TTTQ SSS HS         FNLKTA +LL
Sbjct: 1   MKPQFCHRKLLLEASDYMNLPSPDRPLEVETTTQNSSSSHSFKFSQLFPPFNLKTAFILL 60

Query: 61  AIFLVFFLFTIFSIYIRRFVERRLPFS-----LPPQTAAGSSANGVDRAVVGSLPVFAYR 120
            + L+FFLFTIFSIYIRRF ERR PF       PP TA+ SSANGVDRAVV SLPVFAYR
Sbjct: 61  ILLLLFFLFTIFSIYIRRFAERRYPFPPPPLLRPPHTASSSSANGVDRAVVRSLPVFAYR 120

Query: 121 HYDKFQVECAICLIEFAVDERVKTI 130
             DK QV+C ICL EF  +E+V  +
Sbjct: 121 CDDKLQVDCPICLSEFEAEEKVAVL 145

[Close]
BLAST of Lsi10G012150 vs. ExPASy TrEMBL
Match: A0A438KFZ0 (RING-H2 finger protein ATL57 OS=Vitis vinifera OX=29760 GN=ATL57 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.7e-32
Identity = 85/205 (41.46%), Postives = 118/205 (57.56%), Query Frame = 0 

Query: 28  QTTTQQSSSPHSFNLKTAIVLLAIFLVFFLFTIFSIYIRRFVE-------RRLPFSLPPQ 87
           ++  +Q ++P  F+   A+ ++ +    F    FS+YIRRF E       RR     PP 
Sbjct: 140 RSLNRQPNTP--FDSSMALTVIVLLTALFFMGFFSVYIRRFAEDNAVEMSRRRRHPNPPA 199

Query: 88  TAAGSS---ANGVDRAVVGSLPVFAYRHYDKFQVECAICLIEFAVDERVKTIPFCGHVFH 147
           +++  S   + G+D   V SLP+F+Y    K  ++C +CL +F   + VK IP+C HVFH
Sbjct: 200 SSSSRSPTPSKGLDATTVSSLPLFSYHGDAKETLDCPVCLTQFEDKDTVKIIPYCRHVFH 259

Query: 148 PECIDTWLFSHVSCPVCRSTQFFSKKGG----VRDGTPSGG-----RLTVENGDMCVEVG 207
           P CIDTWL SHVSCPVCRSTQ F  K G    V++G+  GG     RLT ++GD  VEV 
Sbjct: 260 PPCIDTWLSSHVSCPVCRSTQLFPAKDGRCSVVQEGSDEGGSQSHERLTADDGDTYVEVE 319

Query: 208 TRGVRRISSCSNFSGRGSLERTLTF 214
           +  VRR +SCS+   R  L RT +F
Sbjct: 320 SLAVRRTTSCSSLGERALLHRTSSF 342

[Close]
BLAST of Lsi10G012150 vs. NCBI nr
Match: XP_016903383.1 (PREDICTED: RING-H2 finger protein ATL57-like [Cucumis melo] >KAA0037295.1 RING-H2 finger protein ATL57-like [Cucumis melo var. makuwa] >TYK24189.1 RING-H2 finger protein ATL57-like [Cucumis melo var. makuwa])

HSP 1 Score: 285.4 bits (729), Expect = 4.0e-73
Identity = 155/228 (67.98%), Postives = 168/228 (73.68%), Query Frame = 0 

Query: 1   MKHYFCHRKLLLEPSDFVNLPSPDLPL--QTTTQQSSSPHS---------FNLKTAIVLL 60
           MK  F HRKLLLE SD+VNLPSPDLPL  +TTTQ  SS  S         FNLKTA +LL
Sbjct: 1   MKPQFSHRKLLLEASDYVNLPSPDLPLEVETTTQNPSSSRSFKFSQLFPPFNLKTAFILL 60

Query: 61  AIFLVFFLFTIFSIYIRRFVERRLPFS----LPPQTAAGSSANGVDRAVVGSLPVFAYRH 120
            + L+FFLFTIFSIYIRRF ERR PF      PP TAA SSANG+DR VV SLPV +YR 
Sbjct: 61  TLLLLFFLFTIFSIYIRRFAERRYPFPPPPLRPPHTAATSSANGLDRTVVWSLPVSSYRC 120

Query: 121 YDKFQVECAICLIEFAVDERVKTIPFCGHVFHPECIDTWLFSHVSCPVCRSTQFFSKKGG 180
            DK QV+C ICL EF   ERVKTIPFC HVFHP+CID WLFSHVSCPVCRST+F      
Sbjct: 121 DDKLQVDCPICLSEFEAGERVKTIPFCRHVFHPDCIDRWLFSHVSCPVCRSTEF------ 180

Query: 181 VRDGTPSGGRLTVENGDMCVEVGTRGVRRISSCSNFSGRGSLERTLTF 214
             DGT SGGR TV +GD CVEVGTRG+RR SS SNF+GRGSL RTLTF
Sbjct: 181 --DGTASGGRWTVRDGDTCVEVGTRGLRRSSSWSNFAGRGSLGRTLTF 220

[Close]
BLAST of Lsi10G012150 vs. NCBI nr
Match: KGN46895.1 (hypothetical protein Csa_020764 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 4.6e-37
Identity = 93/145 (64.14%), Postives = 104/145 (71.72%), Query Frame = 0 

Query: 1   MKHYFCHRKLLLEPSDFVNLPSPDLPL--QTTTQQSSSPHS---------FNLKTAIVLL 60
           MK  FCHRKLLLE SD++NLPSPD PL  +TTTQ SSS HS         FNLKTA +LL
Sbjct: 1   MKPQFCHRKLLLEASDYMNLPSPDRPLEVETTTQNSSSSHSFKFSQLFPPFNLKTAFILL 60

Query: 61  AIFLVFFLFTIFSIYIRRFVERRLPFS-----LPPQTAAGSSANGVDRAVVGSLPVFAYR 120
            + L+FFLFTIFSIYIRRF ERR PF       PP TA+ SSANGVDRAVV SLPVFAYR
Sbjct: 61  ILLLLFFLFTIFSIYIRRFAERRYPFPPPPLLRPPHTASSSSANGVDRAVVRSLPVFAYR 120

Query: 121 HYDKFQVECAICLIEFAVDERVKTI 130
             DK QV+C ICL EF  +E+V  +
Sbjct: 121 CDDKLQVDCPICLSEFEAEEKVAVL 145

[Close]
BLAST of Lsi10G012150 vs. NCBI nr
Match: XP_002273630.1 (PREDICTED: RING-H2 finger protein ATL57 [Vitis vinifera])

HSP 1 Score: 149.8 bits (377), Expect = 2.6e-32
Identity = 85/205 (41.46%), Postives = 119/205 (58.05%), Query Frame = 0 

Query: 28  QTTTQQSSSPHSFNLKTAIVLLAIFLVFFLFTIFSIYIRRFVE-------RRLPFSLPPQ 87
           ++  +Q ++P  F+   A+ ++ +    F    FS+YIRRF E       RR     PP 
Sbjct: 42  RSLNRQPNTP--FDSSMALTVIVLLTALFFMGFFSVYIRRFAEDNAVEMSRRRRHPNPPA 101

Query: 88  TAAGSS---ANGVDRAVVGSLPVFAYRHYDKFQVECAICLIEFAVDERVKTIPFCGHVFH 147
           +++  S   + G+D + V SLP+F+Y    K  ++C +CL +F   + VK IP+C HVFH
Sbjct: 102 SSSSRSPTPSKGLDASTVSSLPLFSYHGDAKETLDCPVCLTQFEDKDTVKIIPYCRHVFH 161

Query: 148 PECIDTWLFSHVSCPVCRSTQFFSKKGG----VRDGTPSGG-----RLTVENGDMCVEVG 207
           P CIDTWL SHVSCPVCRSTQ F  K G    V++G+  GG     RLT ++GD  VEV 
Sbjct: 162 PPCIDTWLSSHVSCPVCRSTQLFPAKDGRCSVVQEGSDEGGSQSHERLTADDGDTYVEVE 221

Query: 208 TRGVRRISSCSNFSGRGSLERTLTF 214
           +  VRR +SCS+   R  L RT +F
Sbjct: 222 SLAVRRTTSCSSLGERALLHRTSSF 244

[Close]
BLAST of Lsi10G012150 vs. NCBI nr
Match: RVX20100.1 (RING-H2 finger protein ATL57 [Vitis vinifera])

HSP 1 Score: 149.4 bits (376), Expect = 3.4e-32
Identity = 85/205 (41.46%), Postives = 118/205 (57.56%), Query Frame = 0 

Query: 28  QTTTQQSSSPHSFNLKTAIVLLAIFLVFFLFTIFSIYIRRFVE-------RRLPFSLPPQ 87
           ++  +Q ++P  F+   A+ ++ +    F    FS+YIRRF E       RR     PP 
Sbjct: 140 RSLNRQPNTP--FDSSMALTVIVLLTALFFMGFFSVYIRRFAEDNAVEMSRRRRHPNPPA 199

Query: 88  TAAGSS---ANGVDRAVVGSLPVFAYRHYDKFQVECAICLIEFAVDERVKTIPFCGHVFH 147
           +++  S   + G+D   V SLP+F+Y    K  ++C +CL +F   + VK IP+C HVFH
Sbjct: 200 SSSSRSPTPSKGLDATTVSSLPLFSYHGDAKETLDCPVCLTQFEDKDTVKIIPYCRHVFH 259

Query: 148 PECIDTWLFSHVSCPVCRSTQFFSKKGG----VRDGTPSGG-----RLTVENGDMCVEVG 207
           P CIDTWL SHVSCPVCRSTQ F  K G    V++G+  GG     RLT ++GD  VEV 
Sbjct: 260 PPCIDTWLSSHVSCPVCRSTQLFPAKDGRCSVVQEGSDEGGSQSHERLTADDGDTYVEVE 319

Query: 208 TRGVRRISSCSNFSGRGSLERTLTF 214
           +  VRR +SCS+   R  L RT +F
Sbjct: 320 SLAVRRTTSCSSLGERALLHRTSSF 342

[Close]
BLAST of Lsi10G012150 vs. NCBI nr
Match: XP_021692097.1 (RING-H2 finger protein ATL57-like [Hevea brasiliensis])

HSP 1 Score: 146.7 bits (369), Expect = 2.2e-31
Identity = 85/190 (44.74%), Postives = 108/190 (56.84%), Query Frame = 0 

Query: 21  PSPDLPLQTTTQQSSSPHSFNLKTAIVLLAIFLVFFLFTIFSIYIRRFVERRLP-FS--- 80
           P P  P  ++ QQ S P  F+   A+ +L +    F    FSIY+R+F     P FS   
Sbjct: 56  PPPPTPQPSSQQQYSHP-PFDSSMALTVLVLLAALFFMGFFSIYLRKFSTDPTPDFSSHR 115

Query: 81  -------LPPQTAAGSSANGVDRAVVGSLPVFAYRHYD-KFQVECAICLIEFAVDERVKT 140
                  +    AA  S+ G+D  V+ SLPV++Y H D K+Q+ECAICL EF   + VK 
Sbjct: 116 RNNPTTPVRQSRAASGSSKGLDPQVIRSLPVYSYYHEDAKYQIECAICLGEFEEKDTVKI 175

Query: 141 IPFCGHVFHPECIDTWLFSHVSCPVCRSTQFFSKKG-GVRDGTPSGGRLTVENGDMCVEV 198
           IP+C HVFH ECIDTWL  HV+CPVCR  +FF        DG   G   TVENGDMC++V
Sbjct: 176 IPYCKHVFHLECIDTWLKMHVTCPVCRGIRFFEMNSKSSSDGCGGGLVSTVENGDMCIQV 235

[Close]
BLAST of Lsi10G012150 vs. TAIR 10
Match: AT2G27940.1 (RING/U-box superfamily protein )

HSP 1 Score: 112.5 bits (280), Expect = 4.3e-25
Identity = 74/205 (36.10%), Postives = 99/205 (48.29%), Query Frame = 0 

Query: 29  TTTQQSSSPHSFNLKTAIVLLAIFLVFFLFTIFSIYIRRFVE---RRLPFSLPPQTAAG- 88
           T T     P + +   A+ +  + +  F    FS+Y R F +     +  S  P+T +  
Sbjct: 35  TPTPPPQPPSALDSTMALTIFILLVALFFMGFFSVYFRHFADSSSSTVDISSMPRTRSSR 94

Query: 89  ----------------SSANGVDRAVVGSLPVFAYRHYDKFQVE-CAICLIEFAVDERVK 148
                           S   G+D   V SLPV+ Y    K + E C ICL +F   E VK
Sbjct: 95  MSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAKQRNEDCVICLSDFEEGETVK 154

Query: 149 TIPFCGHVFHPECIDTWLFSHVSCPVCRSTQFFSKKGGVRDGTPSGGRLTVENGDMCVEV 208
            IP CGHVFH +C+DTWL S+V+CP+CRS Q FS K       P   + + E  D C  V
Sbjct: 155 VIPHCGHVFHVDCVDTWLSSYVTCPLCRSNQLFSDKDLGMQEPPD--QDSAEEHDTCDGV 214

Query: 209 GTRGVRRISSCSNFSGRGSLERTLT 213
            T  VRR SSCS+   R  LER+L+
Sbjct: 215 DT-CVRRCSSCSSLGQRTGLERSLS 236

[Close]
BLAST of Lsi10G012150 vs. TAIR 10
Match: AT4G40070.1 (RING/U-box superfamily protein )

HSP 1 Score: 96.7 bits (239), Expect = 2.4e-20
Identity = 72/183 (39.34%), Postives = 92/183 (50.27%), Query Frame = 0 

Query: 33  QSSSPHSFNLKT------AIVLLAIFLVFFLFTIFSIYIRRFVERRLPFS---LPPQTAA 92
           QS SP   +L+T        V   +  +FFL  + S+YIR         S      +   
Sbjct: 29  QSFSPSPPDLQTGHTPSKTTVFAVLVTLFFLTGLLSVYIRHCARSNPDSSTRYFRNRAND 88

Query: 93  GSS-ANGVDRAVVGSLPVFAYRHYDKFQV-----ECAICLIEFAVDERVKTIPFCGHVFH 152
           GSS   G+D AVV S PVFAY    + ++     ECAICL E    E V+ +P C H+FH
Sbjct: 89  GSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFH 148

Query: 153 PECIDTWLFSHVSCPVCRS--TQFFSKKGGVRDGTP-SGGRLTVENGDMCVEVGTRGVRR 198
            +CIDTWL+SH +CPVCRS  T   +K G   DG P +  R  V      VEV     RR
Sbjct: 149 IDCIDTWLYSHATCPVCRSNLTAKSNKPGDEDDGVPLAAMRDHVVVDIETVEVAKSHHRR 208

[Close]
BLAST of Lsi10G012150 vs. TAIR 10
Match: AT1G72200.1 (RING/U-box superfamily protein )

HSP 1 Score: 96.3 bits (238), Expect = 3.2e-20
Identity = 51/135 (37.78%), Postives = 73/135 (54.07%), Query Frame = 0 

Query: 34  SSSPHSFNLKTAIVLLAIFLVFFLFTIFSIYIRRFVERRLPFSLPPQTAAGS-------S 93
           S     F+   AI+++ +  VFF    FS+YIRR +ER +         AG+        
Sbjct: 53  SGDSSRFDPTMAILMIVLVSVFFFLGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQ 112

Query: 94  ANGVDRAVVGSLPVFAYR-----HYDKFQVECAICLIEFAVDERVKTIPFCGHVFHPECI 153
           A G+D +++ + P F Y         K  +EC++CL EF  DE ++ IP C HVFHP CI
Sbjct: 113 ARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCI 172

Query: 154 DTWLFSHVSCPVCRS 157
           D WL SH +CP+CR+
Sbjct: 173 DAWLRSHTTCPLCRA 187

[Close]
BLAST of Lsi10G012150 vs. TAIR 10
Match: AT1G22500.1 (RING/U-box superfamily protein )

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-17
Identity = 53/154 (34.42%), Postives = 76/154 (49.35%), Query Frame = 0 

Query: 39  SFNLKTAIVLLAIFLVFFLFTIFSIYIRRFVERRLPFSLPPQTAAGSSAN-------GVD 98
           SF+  TAI+++ +  VFF     S+Y+RR ++  L   +      G+  N       G+D
Sbjct: 34  SFSPTTAIIMIVLVSVFFALGCISVYMRRCLQHAL--GMDSGGGPGNWLNVRQTTEPGLD 93

Query: 99  RAVVGSLPVFAYR-----HYDKFQVECAICLIEFAVDERVKTIPFCGHVFHPECIDTWLF 158
            +V+ + P F Y         K  +EC +CL EF  DE ++ IP C HVFHP CID WL 
Sbjct: 94  ASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLR 153

Query: 159 SHVSCPVCRSTQFFSKKGGVRDGTPSGGRLTVEN 181
           S  +CP+CR+         V    P   R T +N
Sbjct: 154 SQTTCPLCRANLVPVPGESVSSEIPGLARETGQN 185

[Close]
BLAST of Lsi10G012150 vs. TAIR 10
Match: AT1G23980.1 (RING/U-box superfamily protein )

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-17
Identity = 53/166 (31.93%), Postives = 88/166 (53.01%), Query Frame = 0 

Query: 21  PSP-DLPLQTTTQQSSSPHSFNLKTAIVLLAIF----LVFFLFTIFSIYIRRFV-ERRLP 80
           PSP  L  Q T   SSS    N + + ++L I     ++FF+ +I  + +R ++ ++R  
Sbjct: 25  PSPITLNHQLTDSSSSSSSGGNNRISPIILFIIVLLSVIFFICSILHLLVRYYLKKKRSN 84

Query: 81  FSLPPQTAAGSSA-------------------NGVDRAVVGSLPVFAYRHY--DKFQVEC 140
            S  P  +  +                     +G+D+A++ +LPVF Y+     K   +C
Sbjct: 85  LSSSPNESNQNPEFSDSDTYQRQLQQLFHLHDSGLDQALIDALPVFLYKEIKGTKEPFDC 144

Query: 141 AICLIEFAVDERVKTIPFCGHVFHPECIDTWLFSHVSCPVCRSTQF 160
           A+CL EF+ D++++ +P C H FH +CIDTWL S+ +CP+CR T F
Sbjct: 145 AVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCRGTLF 190

The following BLAST results are available for this feature:
BLAST of Lsi10G012150 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SJJ76.1e-2436.10RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1[more]
Q8W5713.4e-1939.34RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3[more]
Q84W404.5e-1937.78RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2[more]
Q8H7N94.2e-1735.46E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=3994... [more]
Q9SK924.7e-1634.42E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana OX=3702 GN=ATL15 PE=1 ... [more]
BLAST of Lsi10G012150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T7531.9e-7367.98RING-H2 finger protein ATL57-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A1S4E5701.9e-7367.98RING-H2 finger protein ATL57-like OS=Cucumis melo OX=3656 GN=LOC107992155 PE=4 S... [more]
A0A2N9IUR44.1e-3944.21RING-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5701... [more]
A0A0A0KAY22.2e-3764.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G149360 PE=4 SV=1[more]
A0A438KFZ01.7e-3241.46RING-H2 finger protein ATL57 OS=Vitis vinifera OX=29760 GN=ATL57 PE=4 SV=1[more]
BLAST of Lsi10G012150 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016903383.14.0e-7367.98PREDICTED: RING-H2 finger protein ATL57-like [Cucumis melo] >KAA0037295.1 RING-H... [more]
KGN46895.14.6e-3764.14hypothetical protein Csa_020764 [Cucumis sativus][more]
XP_002273630.12.6e-3241.46PREDICTED: RING-H2 finger protein ATL57 [Vitis vinifera][more]
RVX20100.13.4e-3241.46RING-H2 finger protein ATL57 [Vitis vinifera][more]
XP_021692097.12.2e-3144.74RING-H2 finger protein ATL57-like [Hevea brasiliensis][more]
BLAST of Lsi10G012150 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G27940.14.3e-2536.10RING/U-box superfamily protein [more]
AT4G40070.12.4e-2039.34RING/U-box superfamily protein [more]
AT1G72200.13.2e-2037.78RING/U-box superfamily protein [more]
AT1G22500.13.3e-1734.42RING/U-box superfamily protein [more]
AT1G23980.13.3e-1731.93RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 113..154
e-value: 7.3E-6
score: 35.5
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 112..155
e-value: 9.2E-12
score: 45.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 113..155
score: 12.1057
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 79..159
e-value: 4.0E-19
score: 70.1
NoneNo IPR availablePANTHERPTHR14155:SF263E3 UBIQUITIN-PROTEIN LIGASE ATL6coord: 29..163
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 29..163
NoneNo IPR availableCDDcd16461RING-H2_EL5_likecoord: 112..155
e-value: 1.63793E-15
score: 65.7943
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 98..160

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G012150.1Lsi10G012150.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane