Lsi10G011310 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G011310
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Ubiquitin carboxyl-terminal hydrolase
Location	chr10: 15576270 .. 15577455 (-)
RNA-Seq Expression	Lsi10G011310
Synteny	Lsi10G011310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTATCTGGATATGGCGTCACGGCCACTTCAGTTTCAAGAATGCTTAAAATTTTGGTCTGCTAGTTACTTTGGTTCGGTTTAAATTATCTGAGTTTGAGGATTATGTTCCAAAAGTATTTACTATTTAGGTTGCGTGGCAGCTTGGAAAGGAATATCGTTTTATCCGAATATTGGGAAGCTAATGAATTGGAGATTGCTTGAAGGCACAGAAGGACCTAAATATGTGTTTATGCCTGTCCACTTGCTGGAACTGTGTCTACCAAATTTTCACATATGAACTATAATTAGCTATTTTGCTATCACATTCATAAACAGCACATGTTCTTGTTATTTTGCTATCAAATTATCGAAAGAGAAAAGGTGGTTTTCATGATATTTTCGTACCAAAATCGCTTTTCCCATGGAAGTTTATTTAATCCAACCCTTCTACTTCTACTTGTTATGTAATTTACTATCTGGATTCAAATCCATTCCCGTGAGATTACTCTAAGCTTTCTGCTTTCTTCATTTTCATTTTTCCCGGTATACGAGACATTTGGTTGCTATCATTCATTTAAATCCAGCATTCTTTTTTGTCTGTTTGTTTGGTGGGAGGCTGCTGGTGTTGGGATTGGGATTGGGAATGATTTGTTTTCAAATTTGGATTGATATGTATGATCTCCTTGAAAATGTGACTTAAACTTGGGAATGGTTGGTTTCCTAAATTTGGTCGTTTTTACAGGTGGCCATAACTATGAGACAGCAGGGGCAATATTCTGATTCAGGACTAAGCTCATATTCAGTTTCTCAAATGCATCACGTTCCCAGTCAAATGGTGGAACAAAGCCACCCTGATCCTTTTGAAGGACGGCTGGAAGCCTTCACTCCAGAGAGAGAGCATTCATATGTAGCTTCAAAAAATGAGGATCAATGGAGATGGGAAAGAGATGAGTCGAAGATGCCAAATTCTATGGCCTCTCACATGTTCAATGAAGGCAAGCATTAATAGCGTGTGTATTGCATCCATCACTTGTTTACGTACTACATGCGACATATTCTCCTGACACTAATAGTTGCTTGCACCTGTTTTCCTCGGAAGTTTACTTTCCAGTTGTAGATTACAATACCCTTTTTCTAGGCGATGTAAAATAAACCATATTAGGTACTTGTTTATTGAAATCAATTTCAACATTCTTTAATTC

mRNA sequence

ATGAAGTATCTGGATATGGCGTCACGGCCACTTCAGTTTCAAGAATGCTTAAAATTTTGGTCTGCTAGTTACTTTGGTTCGGTGGCCATAACTATGAGACAGCAGGGGCAATATTCTGATTCAGGACTAAGCTCATATTCAGTTTCTCAAATGCATCACGTTCCCAGTCAAATGGTGGAACAAAGCCACCCTGATCCTTTTGAAGGACGGCTGGAAGCCTTCACTCCAGAGAGAGAGCATTCATATGTAGCTTCAAAAAATGAGGATCAATGGAGATGGGAAAGAGATGAGTCGAAGATGCCAAATTCTATGGCCTCTCACATGTTCAATGAAGGCAAGCATTAATAGCGTGTGTATTGCATCCATCACTTGTTTACGTACTACATGCGACATATTCTCCTGACACTAATAGTTGCTTGCACCTGTTTTCCTCGGAAGTTTACTTTCCAGTTGTAGATTACAATACCCTTTTTCTAGGCGATGTAAAATAAACCATATTAGGTACTTGTTTATTGAAATCAATTTCAACATTCTTTAATTC

Coding sequence (CDS)

ATGAAGTATCTGGATATGGCGTCACGGCCACTTCAGTTTCAAGAATGCTTAAAATTTTGGTCTGCTAGTTACTTTGGTTCGGTGGCCATAACTATGAGACAGCAGGGGCAATATTCTGATTCAGGACTAAGCTCATATTCAGTTTCTCAAATGCATCACGTTCCCAGTCAAATGGTGGAACAAAGCCACCCTGATCCTTTTGAAGGACGGCTGGAAGCCTTCACTCCAGAGAGAGAGCATTCATATGTAGCTTCAAAAAATGAGGATCAATGGAGATGGGAAAGAGATGAGTCGAAGATGCCAAATTCTATGGCCTCTCACATGTTCAATGAAGGCAAGCATTAA

Protein sequence

MKYLDMASRPLQFQECLKFWSASYFGSVAITMRQQGQYSDSGLSSYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQWRWERDESKMPNSMASHMFNEGKH

Homology

[Close]

BLAST of Lsi10G011310 vs. ExPASy TrEMBL
Match: A0A5D3BAP0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00380 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.1e-46
Identity = 95/108 (87.96%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 6   MASRPLQFQECLKFWSASYFGSVAITMRQQGQYSDSGLSSYSVSQMHHVPSQMVEQSHPD 65
           MASRPLQFQECL FW      SV +TMRQQGQYSDSGL +YSVSQMHHVPSQMVEQSHPD
Sbjct: 1   MASRPLQFQECLTFW------SVFVTMRQQGQYSDSGLGAYSVSQMHHVPSQMVEQSHPD 60

Query: 66  PFEGRLEAFTPEREHSYVASKNEDQWRWERDESKMPNSMASHMFNEGK 114
           PFEGRLEAFTPEREHSYVASKNEDQWRWERDESKMPNSM SHMFNEG+
Sbjct: 61  PFEGRLEAFTPEREHSYVASKNEDQWRWERDESKMPNSMTSHMFNEGQ 102

[Close]

BLAST of Lsi10G011310 vs. ExPASy TrEMBL
Match: A0A5A7V7U3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G001140 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.1e-38
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 28  VAITMRQQGQYSDSGLSSYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKN 87
           V +TMRQQGQYSDSGL +YSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKN
Sbjct: 30  VFVTMRQQGQYSDSGLGAYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKN 89

Query: 88  EDQWRWERDESKMPNSMASHMFNEGK 114
           EDQWRWERDESKMPNSM SHMFNEG+
Sbjct: 90  EDQWRWERDESKMPNSMTSHMFNEGQ 115

[Close]

BLAST of Lsi10G011310 vs. ExPASy TrEMBL
Match: A0A0A0KI70 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G426920 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.0e-37
Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 32  MRQQGQYSDSGLSSYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQW 91
           MRQQGQYSDSGL +YSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQW
Sbjct: 1   MRQQGQYSDSGLGAYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQW 60

Query: 92  RWERDESKMPNSMASHMFNEGK 114
           RWERDESKMPNSM SHMFNEG+
Sbjct: 61  RWERDESKMPNSMTSHMFNEGQ 82

[Close]

BLAST of Lsi10G011310 vs. ExPASy TrEMBL
Match: A0A1S3BME9 (uncharacterized protein LOC103491440 OS=Cucumis melo OX=3656 GN=LOC103491440 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.0e-37
Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 32  MRQQGQYSDSGLSSYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQW 91
           MRQQGQYSDSGL +YSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQW
Sbjct: 1   MRQQGQYSDSGLGAYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQW 60

Query: 92  RWERDESKMPNSMASHMFNEGK 114
           RWERDESKMPNSM SHMFNEG+
Sbjct: 61  RWERDESKMPNSMTSHMFNEGQ 82

[Close]

BLAST of Lsi10G011310 vs. ExPASy TrEMBL
Match: A0A6J1DFR7 (uncharacterized protein LOC111020662 OS=Momordica charantia OX=3673 GN=LOC111020662 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 7.7e-37
Identity = 77/82 (93.90%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 32  MRQQGQYSDSGLSSYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQW 91
           MRQQGQYSDSG++SYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQW
Sbjct: 1   MRQQGQYSDSGINSYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQW 60

Query: 92  RWERDESKMPNSMASHMFNEGK 114
           RW+RDESKM NSMASHMFNEG+
Sbjct: 61  RWDRDESKMSNSMASHMFNEGQ 82

[Close]

BLAST of Lsi10G011310 vs. NCBI nr
Match: TYJ96079.1 (hypothetical protein E5676_scaffold182G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 194.1 bits (492), Expect = 6.5e-46
Identity = 95/108 (87.96%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 6   MASRPLQFQECLKFWSASYFGSVAITMRQQGQYSDSGLSSYSVSQMHHVPSQMVEQSHPD 65
           MASRPLQFQECL FW      SV +TMRQQGQYSDSGL +YSVSQMHHVPSQMVEQSHPD
Sbjct: 1   MASRPLQFQECLTFW------SVFVTMRQQGQYSDSGLGAYSVSQMHHVPSQMVEQSHPD 60

Query: 66  PFEGRLEAFTPEREHSYVASKNEDQWRWERDESKMPNSMASHMFNEGK 114
           PFEGRLEAFTPEREHSYVASKNEDQWRWERDESKMPNSM SHMFNEG+
Sbjct: 61  PFEGRLEAFTPEREHSYVASKNEDQWRWERDESKMPNSMTSHMFNEGQ 102

[Close]

BLAST of Lsi10G011310 vs. NCBI nr
Match: KAG7010323.1 (hypothetical protein SDJN02_27116, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.3 bits (477), Expect = 3.5e-44
Identity = 94/117 (80.34%), Postives = 98/117 (83.76%), Query Frame = 0


Query: 6   MASRPLQFQECLKFWSASY--------FGSVAITMRQQGQYSDSGLSSYSVSQMHHVPSQ 65
           MASRPLQFQE LKFWS            G V +TMRQQGQY DSGL SYSVSQMH VPSQ
Sbjct: 1   MASRPLQFQEYLKFWSRGAGVLVLVLGLGMVGVTMRQQGQYPDSGLGSYSVSQMHQVPSQ 60

Query: 66  MVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQWRWERDESKMPNSMASHMFNEGKH 115
            +EQSHPDPFEGRLEAFTPERE+SY+ASKNEDQWRWERDESKMPNSMASHMFNEGKH
Sbjct: 61  RMEQSHPDPFEGRLEAFTPERENSYIASKNEDQWRWERDESKMPNSMASHMFNEGKH 117

[Close]

BLAST of Lsi10G011310 vs. NCBI nr
Match: KAA0061739.1 (hypothetical protein E6C27_scaffold212G001140 [Cucumis melo var. makuwa])

HSP 1 Score: 169.1 bits (427), Expect = 2.2e-38
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 0


Query: 28  VAITMRQQGQYSDSGLSSYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKN 87
           V +TMRQQGQYSDSGL +YSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKN
Sbjct: 30  VFVTMRQQGQYSDSGLGAYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKN 89

Query: 88  EDQWRWERDESKMPNSMASHMFNEGK 114
           EDQWRWERDESKMPNSM SHMFNEG+
Sbjct: 90  EDQWRWERDESKMPNSMTSHMFNEGQ 115

[Close]

BLAST of Lsi10G011310 vs. NCBI nr
Match: XP_031744069.1 (uncharacterized protein LOC101221687 isoform X2 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 4.2e-37
Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 32  MRQQGQYSDSGLSSYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQW 91
           MRQQGQYSDSGL +YSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQW
Sbjct: 1   MRQQGQYSDSGLGAYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQW 60

Query: 92  RWERDESKMPNSMASHMFNEGK 114
           RWERDESKMPNSM SHMFNEG+
Sbjct: 61  RWERDESKMPNSMTSHMFNEGQ 82

[Close]

BLAST of Lsi10G011310 vs. NCBI nr
Match: XP_008449603.1 (PREDICTED: uncharacterized protein LOC103491440 [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 4.2e-37
Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 32  MRQQGQYSDSGLSSYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQW 91
           MRQQGQYSDSGL +YSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQW
Sbjct: 1   MRQQGQYSDSGLGAYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQW 60

Query: 92  RWERDESKMPNSMASHMFNEGK 114
           RWERDESKMPNSM SHMFNEG+
Sbjct: 61  RWERDESKMPNSMTSHMFNEGQ 82

[Close]

BLAST of Lsi10G011310 vs. TAIR 10
Match: AT5G22040.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 3.2e-11
Identity = 37/83 (44.58%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 32  MRQQGQYSDSG-LSSYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQ 91
           MR+QG ++DS   S+Y   Q        ++  H D F+G+LEAFTPER+  Y  S+ E Q
Sbjct: 1   MRRQGNFADSSPASAYGAGQ--------IQDPHSD-FQGQLEAFTPERDQPYSDSQAEGQ 60

Query: 92  WRWERDESKMPNSMASHMFNEGK 114
           WRWERD   M   MA+ ++NEG+
Sbjct: 61  WRWERDGPNMSRPMATAVYNEGQ 74

[Close]

BLAST of Lsi10G011310 vs. TAIR 10
Match: AT5G22040.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 3.2e-11
Identity = 37/83 (44.58%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 32  MRQQGQYSDSG-LSSYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQ 91
           MR+QG ++DS   S+Y   Q        ++  H D F+G+LEAFTPER+  Y  S+ E Q
Sbjct: 1   MRRQGNFADSSPASAYGAGQ--------IQDPHSD-FQGQLEAFTPERDQPYSDSQAEGQ 60

Query: 92  WRWERDESKMPNSMASHMFNEGK 114
           WRWERD   M   MA+ ++NEG+
Sbjct: 61  WRWERDGPNMSRPMATAVYNEGQ 74

[Close]

BLAST of Lsi10G011310 vs. TAIR 10
Match: AT5G22040.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. )

HSP 1 Score: 65.5 bits (158), Expect = 3.2e-11
Identity = 37/83 (44.58%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 32  MRQQGQYSDSG-LSSYSVSQMHHVPSQMVEQSHPDPFEGRLEAFTPEREHSYVASKNEDQ 91
           MR+QG ++DS   S+Y   Q        ++  H D F+G+LEAFTPER+  Y  S+ E Q
Sbjct: 1   MRRQGNFADSSPASAYGAGQ--------IQDPHSD-FQGQLEAFTPERDQPYSDSQAEGQ 60

Query: 92  WRWERDESKMPNSMASHMFNEGK 114
           WRWERD   M   MA+ ++NEG+
Sbjct: 61  WRWERDGPNMSRPMATAVYNEGQ 74

The following BLAST results are available for this feature:

BLAST of Lsi10G011310 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi10G011310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BAP0	3.1e-46	87.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V7U3	1.1e-38	93.02	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0KI70	2.0e-37	95.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G426920 PE=4 SV=1	[more]
A0A1S3BME9	2.0e-37	95.12	uncharacterized protein LOC103491440 OS=Cucumis melo OX=3656 GN=LOC103491440 PE=...	[more]
A0A6J1DFR7	7.7e-37	93.90	uncharacterized protein LOC111020662 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of Lsi10G011310 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96079.1	6.5e-46	87.96	hypothetical protein E5676_scaffold182G00380 [Cucumis melo var. makuwa]	[more]
KAG7010323.1	3.5e-44	80.34	hypothetical protein SDJN02_27116, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0061739.1	2.2e-38	93.02	hypothetical protein E6C27_scaffold212G001140 [Cucumis melo var. makuwa]	[more]
XP_031744069.1	4.2e-37	95.12	uncharacterized protein LOC101221687 isoform X2 [Cucumis sativus]	[more]
XP_008449603.1	4.2e-37	95.12	PREDICTED: uncharacterized protein LOC103491440 [Cucumis melo]	[more]

BLAST of Lsi10G011310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22040.1	3.2e-11	44.58	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT5G22040.2	3.2e-11	44.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G22040.3	3.2e-11	44.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..114
None	No IPR available	PANTHER	PTHR34210	OS01G0252900 PROTEIN	coord: 32..113
None	No IPR available	PANTHER	PTHR34210:SF1	SUBFAMILY NOT NAMED	coord: 32..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G011310.1	Lsi10G011310.1	mRNA