Lsi10G011200 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G011200
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	nuclear pore complex protein NUP96
Location	chr10: 15446622 .. 15448760 (-)
RNA-Seq Expression	Lsi10G011200
Synteny	Lsi10G011200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTGTACGCTTTCAACCATCTTACTGAAAACCGTAAGATGGTTTCAGGTTTGTTGGTTTAGAACCAATTGTAGTTCCTATCATATTTTAGGTTATATTTAAGTTTCATCTATAAGTCACGTAATACCAGGTCTTCTTTTTTGCTAATGATGGGAAAAGTGGTTGATGCTAAAATCTGTTGATTTGTCATTTCCAATGATGCAGCTGAGCACTCGGATATATGGAAGCTTGCTACTTCAATGGAGATCCACAAGTCTGAAATAGAAAATTGGGAATTTGGAGCTGGAATTTATATATCATTCTATTCTCTGAGGAGTTCTTTGCAGGAAAACAATGAAGGGAGTGAACTGGTATGCACACCTAAGCTTTTCTTTTGTAGTGTTCTAAGACTGCAAATGGGTTTTTAGATCCGAAACTTTGGGTTATTTGAATTCACTCCAAGTCCTCATGCACCCTGCCTTTTATTTTAATTCCTGATTAAGGTATAATTATATTGCAGGACTCACTTGAGAGCAGAAATGTTGCTTGTGGGGAATTTCTTGGTCGACTAAATGAATCATTGGCAGTTTGGGGCGACAGATTACCAGTTGAGGCAAGGTATGTAGAATTCTTGACTGACATTTCAATCTTGAAATATGATCTTTTGTCTGATTCCGTTGTATTTCAGGACTTGTTAAGAATAAAATGCCTAATCTCTTAAATTTTTGTTCCTTTTGAAATATGATCTCTATTAGGTTGTATTTGTTGTTCGTATCTTTTATTTTTCTCTCCTTTTGGAAGTTTGCATCTTTTCAATTTTTATTCCTTCTCATTACATCAATGAGAAGAAAGAAGTTGTTTCTGGTTTTTAAAAAATTATTTAAAAAAAAAGAAAAAGAAAAAACTCCACAAGGGAGCCTGTTTCAACGTCATTAGAAGGCTTCTCAAGACCAAATAGAAGAGTGAACTGAACTTTTATCCAACCAGACGAAAGATAGACATCTAGGGATTAAAAAGTGTTTCCTCATAGACTCATATAGTATTTACATACTTTCTGGAGTAAAAGTAAAATAGGAAAAATAATTAAACTTTAAATGTGAATTTATGTATTTTTGGTGGAGGAAGACAAATTGACTAGGAAATTTTCGTGTGAAATTTTGAGGTATTTCAAGCTATATACAGTAGTATATATAATACAGAGATTTAAGAAGTTTGTTTTATATTGTGTATCATATAACTTTGTTTATGAACTGCAATTGGACGAGACTTTTTCTTTTTACTTTGTGGTCTTTTTTTCTTCTTGTTACTTTTGTTATTTTTATAGCATTGTAAAATCAAGGGATTAGTATTAGTATTGAGTTGTCTATTAATCTGTTCACAGAGTTGTTTACTCAAAGATGGCCGAGGAGATAAGTAGATTACTTCTATTAGATATAGGGGAGGGTTCTACTCGTGATGCTCAGTTGAGTTGCTTTGACACTATTTTTACCGCCCCAATGCGAGAGGATCTTCGCTCAAGTCACTTGCAGGATGCAGTTTCCATTTTTACTTGTTACCTCTCAGAAATCACATCATAGTCTTCACCTCTGTGAACTTAACGCAGCTTCGATTTTTAACCGGAGGATCGTGTTTTTGCATATAGTCAATGCCTCTATCCTTTGCTGTATACATTTGAACAAGTAGAGGCAGGAGTGACGGTTTGCAGACCCCCCTATGGCCCTTCGAACCGCCTGGAGAAAGGGTTTGTGATTCCTGAGGTTGCAATATTAGCAATTAATCTGAAAGCAAAGTTCAAAGGAACGAAATAAGCTGTTCTTATAAGCCAAATTGGTATTTGTTAGAACTATACCTTCTCTTGTAGTGGTCAGTACATCTCAATTTTTAAATATTTATGGTAGTTAGTCATGTATTTCCCATGAAAAATTTACTGAAGTTCACACAAAATTTTACTGATCATCTCTTGCAGTATAGTGGCTTACACTTACACGTCTGATTATCAGCTGATGTTAGGTTTACACTTACACGTCTGATTATCAGCTGATGTTAGGTTTGTTATCATCAAAATATTTCTGATTCAAACCATATCAAATGTTGAATGTGAATTTCAAAATATTTTACTTCGCTACCACTCCTAAATAAAATTCACTTTACAGCTCC

mRNA sequence

ATGAAGTGTACGCTTTCAACCATCTTACTGAAAACCGTAAGATGGTTTCAGGTTTGTTGGTTTAGAACCAATTGTAGTTCCTATCATATTTTAGCTGAGCACTCGGATATATGGAAGCTTGCTACTTCAATGGAGATCCACAAGTCTGAAATAGAAAATTGGGAATTTGGAGCTGGAATTTATATATCATTCTATTCTCTGAGGAGTTCTTTGCAGGAAAACAATGAAGGGAGTGAACTGGACTCACTTGAGAGCAGAAATGTTGCTTGTGGGGAATTTCTTGGTCGACTAAATGAATCATTGGCAGTTTGGGGCGACAGATTACCAGTTGAGGCAAGAGTTGTTTACTCAAAGATGGCCGAGGAGATAAGTAGATTACTTCTATTAGATATAGGGGAGGGTTCTACTCGTGATGCTCAGTTGAGTTGCTTTGACACTATTTTTACCGCCCCAATGCGAGAGGATCTTCGCTCAAGTCACTTGCAGGATGCAGTTTCCATTTTTACTTGTTACCTCTCAGAAATCACATCATAGTCTTCACCTCTGTGAACTTAACGCAGCTTCGATTTTTAACCGGAGGATCGTGTTTTTGCATATAGTCAATGCCTCTATCCTTTGCTGTATACATTTGAACAAGTAGAGGCAGGAGTGACGGTTTGCAGACCCCCCTATGGCCCTTCGAACCGCCTGGAGAAAGGGTTTGTGATTCCTGAGGTTGCAATATTAGCAATTAATCTGAAAGCAAAGTTCAAAGGAACGAAATAAGCTGTTCTTATAAGCCAAATTGGTATTTGTTAGAACTATACCTTCTCTTGTAGTGGTCAGTACATCTCAATTTTTAAATATTTATGGTAGTTAGTCATGTATTTCCCATGAAAAATTTACTGAAGTTCACACAAAATTTTACTGATCATCTCTTGCAGTATAGTGGCTTACACTTACACGTCTGATTATCAGCTGATGTTAGGTTTACACTTACACGTCTGATTATCAGCTGATGTTAGGTTTGTTATCATCAAAATATTTCTGATTCAAACCATATCAAATGTTGAATGTGAATTTCAAAATATTTTACTTCGCTACCACTCCTAAATAAAATTCACTTTACAGCTCC

Coding sequence (CDS)

ATGAAGTGTACGCTTTCAACCATCTTACTGAAAACCGTAAGATGGTTTCAGGTTTGTTGGTTTAGAACCAATTGTAGTTCCTATCATATTTTAGCTGAGCACTCGGATATATGGAAGCTTGCTACTTCAATGGAGATCCACAAGTCTGAAATAGAAAATTGGGAATTTGGAGCTGGAATTTATATATCATTCTATTCTCTGAGGAGTTCTTTGCAGGAAAACAATGAAGGGAGTGAACTGGACTCACTTGAGAGCAGAAATGTTGCTTGTGGGGAATTTCTTGGTCGACTAAATGAATCATTGGCAGTTTGGGGCGACAGATTACCAGTTGAGGCAAGAGTTGTTTACTCAAAGATGGCCGAGGAGATAAGTAGATTACTTCTATTAGATATAGGGGAGGGTTCTACTCGTGATGCTCAGTTGAGTTGCTTTGACACTATTTTTACCGCCCCAATGCGAGAGGATCTTCGCTCAAGTCACTTGCAGGATGCAGTTTCCATTTTTACTTGTTACCTCTCAGAAATCACATCATAG

Protein sequence

MKCTLSTILLKTVRWFQVCWFRTNCSSYHILAEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDIGEGSTRDAQLSCFDTIFTAPMREDLRSSHLQDAVSIFTCYLSEITS

Homology

[Close]

BLAST of Lsi10G011200 vs. ExPASy Swiss-Prot
Match: Q8LLD0 (Nuclear pore complex protein NUP96 OS=Arabidopsis thaliana OX=3702 GN=NUP96 PE=1 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.0e-48
Identity = 95/149 (63.76%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 27   SYHILAEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGS-ELDSLES 86
            S  + A HS+IW++ATSM+  KSEIENW+ GAGIY+SFY L+SSLQE+ +   EL+ L+S
Sbjct: 892  SLFLSANHSEIWRIATSMDDRKSEIENWDLGAGIYMSFYLLKSSLQEDADTMVELEPLDS 951

Query: 87   RNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDIGEGSTRDAQLSCFD 146
             N +C  F+GRLNESLAVWGDRLPVEARV YSKMAEEI  LLL D+ +  +R+ QL+CF+
Sbjct: 952  TNESCRNFVGRLNESLAVWGDRLPVEARVAYSKMAEEICDLLLSDLSKNPSRETQLTCFE 1011

Query: 147  TIFTAPMREDLRSSHLQDAVSIFTCYLSE 175
            T F AP+ ED+RS+HLQDAVS+F+ YLSE
Sbjct: 1012 TAFDAPLPEDVRSTHLQDAVSLFSLYLSE 1040

[Close]

BLAST of Lsi10G011200 vs. ExPASy TrEMBL
Match: A0A1S3BNC9 (nuclear pore complex protein NUP96 OS=Cucumis melo OX=3656 GN=LOC103491446 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.3e-72
Identity = 138/146 (94.52%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 32   AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACG 91
            AEHSD+WK ATSME+HKSEIENWEFGAGIYISFYSLRSSLQEN EGSELDSLESRNVACG
Sbjct: 922  AEHSDVWKFATSMEMHKSEIENWEFGAGIYISFYSLRSSLQENTEGSELDSLESRNVACG 981

Query: 92   EFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDIGEGSTRDAQLSCFDTIFTAP 151
            EF+GRLNESLAVWGDRLPVEARVVYSKMAEEISRLLL DIGEGSTRDAQLSCFDTIF+AP
Sbjct: 982  EFIGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLSDIGEGSTRDAQLSCFDTIFSAP 1041

Query: 152  MREDLRSSHLQDAVSIFTCYLSEITS 178
            MREDLRSSHLQDAVS+FTCYLSEITS
Sbjct: 1042 MREDLRSSHLQDAVSLFTCYLSEITS 1067

[Close]

BLAST of Lsi10G011200 vs. ExPASy TrEMBL
Match: A0A0A0KGY4 (Peptidase S59 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G427970 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 6.7e-72
Identity = 138/146 (94.52%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 32   AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACG 91
            AEHSDIWK ATSME+HKSEIENWEFGAGIYISFYSLRSSLQEN EGSELDSLESRN ACG
Sbjct: 901  AEHSDIWKFATSMEMHKSEIENWEFGAGIYISFYSLRSSLQENTEGSELDSLESRNAACG 960

Query: 92   EFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDIGEGSTRDAQLSCFDTIFTAP 151
            EFLGRLNESLAVWGDRLPV+ARVVYSKMAEEISRLLL DIGEGSTRDAQLSCFDTIF+AP
Sbjct: 961  EFLGRLNESLAVWGDRLPVQARVVYSKMAEEISRLLLSDIGEGSTRDAQLSCFDTIFSAP 1020

Query: 152  MREDLRSSHLQDAVSIFTCYLSEITS 178
            MREDLRSSHLQDAVS+FTCYLSEITS
Sbjct: 1021 MREDLRSSHLQDAVSLFTCYLSEITS 1046

[Close]

BLAST of Lsi10G011200 vs. ExPASy TrEMBL
Match: A0A5A7V5H9 (Nuclear pore complex protein NUP96 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G001210 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.4e-71
Identity = 136/146 (93.15%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 32   AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACG 91
            AEHSD+WK ATSME+HKSEIENWEFGAGIYISFYSLRSSLQEN EGS LDSLESRNVACG
Sbjct: 922  AEHSDVWKFATSMEMHKSEIENWEFGAGIYISFYSLRSSLQENTEGSVLDSLESRNVACG 981

Query: 92   EFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDIGEGSTRDAQLSCFDTIFTAP 151
            EF+GRLNESLAVWGDRLPVEARVVYSKMAEEISRLLL DIGEGSTRDAQLSCFDTIF+AP
Sbjct: 982  EFIGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLSDIGEGSTRDAQLSCFDTIFSAP 1041

Query: 152  MREDLRSSHLQDAVSIFTCYLSEITS 178
            MREDLRSSHLQDAVS+FTCYLSEI+S
Sbjct: 1042 MREDLRSSHLQDAVSLFTCYLSEISS 1067

[Close]

BLAST of Lsi10G011200 vs. ExPASy TrEMBL
Match: A0A6J1DHS9 (nuclear pore complex protein NUP96 OS=Momordica charantia OX=3673 GN=LOC111020613 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.4e-69
Identity = 135/146 (92.47%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 32   AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACG 91
            AEHSD+WKLATSME HKSEIENWE GAGIYISFYSLRS LQENNE SE DSLESRNVACG
Sbjct: 924  AEHSDVWKLATSMETHKSEIENWESGAGIYISFYSLRSLLQENNEASEFDSLESRNVACG 983

Query: 92   EFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDIGEGSTRDAQLSCFDTIFTAP 151
            EFLGRLNESLAVWG+RLPVEARVVYSKMAEEISRLLL  IGEGSTRDAQ+SCFDTIFTAP
Sbjct: 984  EFLGRLNESLAVWGNRLPVEARVVYSKMAEEISRLLLSGIGEGSTRDAQMSCFDTIFTAP 1043

Query: 152  MREDLRSSHLQDAVSIFTCYLSEITS 178
            MREDLRSSHLQDAVS+FTCYLSEITS
Sbjct: 1044 MREDLRSSHLQDAVSLFTCYLSEITS 1069

[Close]

BLAST of Lsi10G011200 vs. ExPASy TrEMBL
Match: A0A6J1JXJ5 (nuclear pore complex protein NUP96 OS=Cucurbita maxima OX=3661 GN=LOC111490694 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 3.1e-69
Identity = 133/146 (91.10%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 32   AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACG 91
            AEHSDIWKLATSME HKSEI NWEFGAG+YISFYSLRSSLQE +E SELDSLESRN ACG
Sbjct: 922  AEHSDIWKLATSMETHKSEIVNWEFGAGLYISFYSLRSSLQETDEASELDSLESRNAACG 981

Query: 92   EFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDIGEGSTRDAQLSCFDTIFTAP 151
            EFLGRLNESLA+WGD LPVEARVVYSKMAEEIS+LLL DIGEGSTRDAQLSCFDTIFTAP
Sbjct: 982  EFLGRLNESLAIWGDELPVEARVVYSKMAEEISKLLLSDIGEGSTRDAQLSCFDTIFTAP 1041

Query: 152  MREDLRSSHLQDAVSIFTCYLSEITS 178
            +REDLRSSHLQDAVS+FTCYLSEITS
Sbjct: 1042 LREDLRSSHLQDAVSLFTCYLSEITS 1067

[Close]

BLAST of Lsi10G011200 vs. NCBI nr
Match: XP_038901001.1 (nuclear pore complex protein NUP96 [Benincasa hispida])

HSP 1 Score: 284.3 bits (726), Expect = 7.4e-73
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 32   AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACG 91
            AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVAC 
Sbjct: 923  AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACE 982

Query: 92   EFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDIGEGSTRDAQLSCFDTIFTAP 151
            EFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLL DIGEGSTRDAQLSCF+TIFTAP
Sbjct: 983  EFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLSDIGEGSTRDAQLSCFNTIFTAP 1042

Query: 152  MREDLRSSHLQDAVSIFTCYLSEITS 178
            MREDLRSSHLQDAVS+FTCYLSEITS
Sbjct: 1043 MREDLRSSHLQDAVSLFTCYLSEITS 1068

[Close]

BLAST of Lsi10G011200 vs. NCBI nr
Match: XP_008449614.1 (PREDICTED: nuclear pore complex protein NUP96 [Cucumis melo])

HSP 1 Score: 281.6 bits (719), Expect = 4.8e-72
Identity = 138/146 (94.52%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 32   AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACG 91
            AEHSD+WK ATSME+HKSEIENWEFGAGIYISFYSLRSSLQEN EGSELDSLESRNVACG
Sbjct: 922  AEHSDVWKFATSMEMHKSEIENWEFGAGIYISFYSLRSSLQENTEGSELDSLESRNVACG 981

Query: 92   EFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDIGEGSTRDAQLSCFDTIFTAP 151
            EF+GRLNESLAVWGDRLPVEARVVYSKMAEEISRLLL DIGEGSTRDAQLSCFDTIF+AP
Sbjct: 982  EFIGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLSDIGEGSTRDAQLSCFDTIFSAP 1041

Query: 152  MREDLRSSHLQDAVSIFTCYLSEITS 178
            MREDLRSSHLQDAVS+FTCYLSEITS
Sbjct: 1042 MREDLRSSHLQDAVSLFTCYLSEITS 1067

[Close]

BLAST of Lsi10G011200 vs. NCBI nr
Match: XP_004140177.3 (nuclear pore complex protein NUP96 [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 1.4e-71
Identity = 138/146 (94.52%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 32   AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACG 91
            AEHSDIWK ATSME+HKSEIENWEFGAGIYISFYSLRSSLQEN EGSELDSLESRN ACG
Sbjct: 928  AEHSDIWKFATSMEMHKSEIENWEFGAGIYISFYSLRSSLQENTEGSELDSLESRNAACG 987

Query: 92   EFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDIGEGSTRDAQLSCFDTIFTAP 151
            EFLGRLNESLAVWGDRLPV+ARVVYSKMAEEISRLLL DIGEGSTRDAQLSCFDTIF+AP
Sbjct: 988  EFLGRLNESLAVWGDRLPVQARVVYSKMAEEISRLLLSDIGEGSTRDAQLSCFDTIFSAP 1047

Query: 152  MREDLRSSHLQDAVSIFTCYLSEITS 178
            MREDLRSSHLQDAVS+FTCYLSEITS
Sbjct: 1048 MREDLRSSHLQDAVSLFTCYLSEITS 1073

[Close]

BLAST of Lsi10G011200 vs. NCBI nr
Match: KAA0061746.1 (nuclear pore complex protein NUP96 [Cucumis melo var. makuwa])

HSP 1 Score: 277.3 bits (708), Expect = 9.0e-71
Identity = 136/146 (93.15%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 32   AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACG 91
            AEHSD+WK ATSME+HKSEIENWEFGAGIYISFYSLRSSLQEN EGS LDSLESRNVACG
Sbjct: 922  AEHSDVWKFATSMEMHKSEIENWEFGAGIYISFYSLRSSLQENTEGSVLDSLESRNVACG 981

Query: 92   EFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDIGEGSTRDAQLSCFDTIFTAP 151
            EF+GRLNESLAVWGDRLPVEARVVYSKMAEEISRLLL DIGEGSTRDAQLSCFDTIF+AP
Sbjct: 982  EFIGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLSDIGEGSTRDAQLSCFDTIFSAP 1041

Query: 152  MREDLRSSHLQDAVSIFTCYLSEITS 178
            MREDLRSSHLQDAVS+FTCYLSEI+S
Sbjct: 1042 MREDLRSSHLQDAVSLFTCYLSEISS 1067

[Close]

BLAST of Lsi10G011200 vs. NCBI nr
Match: XP_022153007.1 (nuclear pore complex protein NUP96 [Momordica charantia])

HSP 1 Score: 272.3 bits (695), Expect = 2.9e-69
Identity = 135/146 (92.47%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 32   AEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGSELDSLESRNVACG 91
            AEHSD+WKLATSME HKSEIENWE GAGIYISFYSLRS LQENNE SE DSLESRNVACG
Sbjct: 924  AEHSDVWKLATSMETHKSEIENWESGAGIYISFYSLRSLLQENNEASEFDSLESRNVACG 983

Query: 92   EFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDIGEGSTRDAQLSCFDTIFTAP 151
            EFLGRLNESLAVWG+RLPVEARVVYSKMAEEISRLLL  IGEGSTRDAQ+SCFDTIFTAP
Sbjct: 984  EFLGRLNESLAVWGNRLPVEARVVYSKMAEEISRLLLSGIGEGSTRDAQMSCFDTIFTAP 1043

Query: 152  MREDLRSSHLQDAVSIFTCYLSEITS 178
            MREDLRSSHLQDAVS+FTCYLSEITS
Sbjct: 1044 MREDLRSSHLQDAVSLFTCYLSEITS 1069

[Close]

BLAST of Lsi10G011200 vs. TAIR 10
Match: AT1G80680.1 (SUPPRESSOR OF AUXIN RESISTANCE 3 )

HSP 1 Score: 194.5 bits (493), Expect = 7.2e-50
Identity = 95/149 (63.76%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 27   SYHILAEHSDIWKLATSMEIHKSEIENWEFGAGIYISFYSLRSSLQENNEGS-ELDSLES 86
            S  + A HS+IW++ATSM+  KSEIENW+ GAGIY+SFY L+SSLQE+ +   EL+ L+S
Sbjct: 892  SLFLSANHSEIWRIATSMDDRKSEIENWDLGAGIYMSFYLLKSSLQEDADTMVELEPLDS 951

Query: 87   RNVACGEFLGRLNESLAVWGDRLPVEARVVYSKMAEEISRLLLLDIGEGSTRDAQLSCFD 146
             N +C  F+GRLNESLAVWGDRLPVEARV YSKMAEEI  LLL D+ +  +R+ QL+CF+
Sbjct: 952  TNESCRNFVGRLNESLAVWGDRLPVEARVAYSKMAEEICDLLLSDLSKNPSRETQLTCFE 1011

Query: 147  TIFTAPMREDLRSSHLQDAVSIFTCYLSE 175
            T F AP+ ED+RS+HLQDAVS+F+ YLSE
Sbjct: 1012 TAFDAPLPEDVRSTHLQDAVSLFSLYLSE 1040

The following BLAST results are available for this feature:

BLAST of Lsi10G011200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LLD0	1.0e-48	63.76	Nuclear pore complex protein NUP96 OS=Arabidopsis thaliana OX=3702 GN=NUP96 PE=1...	[more]

BLAST of Lsi10G011200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BNC9	2.3e-72	94.52	nuclear pore complex protein NUP96 OS=Cucumis melo OX=3656 GN=LOC103491446 PE=4 ...	[more]
A0A0A0KGY4	6.7e-72	94.52	Peptidase S59 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G4279...	[more]
A0A5A7V5H9	4.4e-71	93.15	Nuclear pore complex protein NUP96 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A6J1DHS9	1.4e-69	92.47	nuclear pore complex protein NUP96 OS=Momordica charantia OX=3673 GN=LOC11102061...	[more]
A0A6J1JXJ5	3.1e-69	91.10	nuclear pore complex protein NUP96 OS=Cucurbita maxima OX=3661 GN=LOC111490694 P...	[more]

BLAST of Lsi10G011200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901001.1	7.4e-73	97.26	nuclear pore complex protein NUP96 [Benincasa hispida]	[more]
XP_008449614.1	4.8e-72	94.52	PREDICTED: nuclear pore complex protein NUP96 [Cucumis melo]	[more]
XP_004140177.3	1.4e-71	94.52	nuclear pore complex protein NUP96 [Cucumis sativus]	[more]
KAA0061746.1	9.0e-71	93.15	nuclear pore complex protein NUP96 [Cucumis melo var. makuwa]	[more]
XP_022153007.1	2.9e-69	92.47	nuclear pore complex protein NUP96 [Momordica charantia]	[more]

BLAST of Lsi10G011200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80680.1	7.2e-50	63.76	SUPPRESSOR OF AUXIN RESISTANCE 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037637	Nuclear pore complex protein NUP98-NUP96	PANTHER	PTHR23198:SF17	NUCLEAR PORE COMPLEX PROTEIN NUP98-NUP96	coord: 27..176
IPR037665	Nucleoporin peptidase S59-like	PANTHER	PTHR23198	NUCLEOPORIN	coord: 27..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G011200.1	Lsi10G011200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0006749	glutathione metabolic process
biological_process	GO:0070932	histone H3 deacetylation
biological_process	GO:0002758	innate immune response-activating signal transduction
biological_process	GO:0048574	long-day photoperiodism, flowering
biological_process	GO:0030186	melatonin metabolic process
biological_process	GO:0051028	mRNA transport
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0015031	protein transport
biological_process	GO:0042548	regulation of photosynthesis, light reaction
biological_process	GO:0009733	response to auxin
biological_process	GO:0090042	tubulin deacetylation
biological_process	GO:0006325	chromatin organization
cellular_component	GO:0031965	nuclear membrane
cellular_component	GO:0005643	nuclear pore
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005829	cytosol
molecular_function	GO:0043014	alpha-tubulin binding
molecular_function	GO:0048487	beta-tubulin binding
molecular_function	GO:0004362	glutathione-disulfide reductase (NADPH) activity
molecular_function	GO:0032041	NAD-dependent histone deacetylase activity (H3-K14 specific)
molecular_function	GO:0051721	protein phosphatase 2A binding
molecular_function	GO:0043621	protein self-association
molecular_function	GO:0017056	structural constituent of nuclear pore
molecular_function	GO:0042903	tubulin deacetylase activity