Lsi10G011000 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTTCCTTCTTCTTCTCTGACCAGCTCCGAAGAGTCCACTGCAAGCAGCTTCGATCGACTTCTTCTCCTGTCTCTCGTTTGGGTTTGTGATGTAAAACGAGATTGAGCACCAGAGAACAAGAGAGCTCGAGAACAAGAGAACGAGAGTGCGAGACCGCGAGAAAGAGAGGAATTCAACAAAGAGGAAGAGAGAGCCAAGAGCGAGAACAAAGGCCAACCAACGTGAGTGAGATTTCATTTTGATAATTTCACCCGAATGTAACATCAGCAAAGGATCAAAAAACCTCAAATTCAAAATGTATGACAATTTTCATTTTCTCCCCCATTTCTGAGTCATCCATCCCCCGAAATCCAGAAAATGTGATTAGAGTAACAAAGTGTACTATAAAGTCTATAATGGCATTAATAGATAACCCACTTTTTACCCTAAGAACTCTCTCTCTCTCTCATGCTAAATAAAGGACAGATCTATTTTAACAAGGAAGTGAAATGAATGTTGGAAAAACACAATTGGTTTTTAATATTTTTTTTTTTTTTTTTTAGATAAAGAAGTTTGTTTTTGTTTTGGTTTTGATGGTGTCTAATTTGGATGTTTCCTATTTTAAAGTTGTTTGTATTTAGAACAAACATATATAAAGAGAAGGAAGTTTTTTATTTGAAGATTTCTCACATTTATTTTCCCTCTCTGTTGCAGATCTTCTTACCTCCCCCTCTCCTCTGGAGACCTTATGGATCCTCGGACGGAGGTAATTTAATTATTTTCCTCTCTTGATTATCCCATTAATCATGATTATGCCATTAATTTATTTCAATCCATATCCTTTTTATTTAAATTTTCATTGTTTAGGTTATGCTTTTAAATCCAAATCACAATAATGAGTTCAATCTGGGCTTTAAATCTTTCTAACTTTCAATTTGTCTTTAAATGCTATATTAATTTCAATTCAAGTGAGTCCCTATGAAAATTCTCTCATTTCCATCTCAGACAGTATGTAATAATGTCGTATTATTAAGATCTCAAAAGAAAGACAAAGCAGCTTTCAGAAGATAATTGTGGCTCATGGTTTAATAAAATTATGTTTTTTTTTTCAAGTAATTAATAAATTTATGTAAGATGGTTTGGCTTGAAACTTTGGGAATCTTTTGAATTTAGATTAGGTAAAAGAATGAATTATAGGAACTCATAGTTCAAAAATCTGATCAAGAGATGTTAACCTTCCAAGATTTCCAGCTACGAAAAAATTCGCCTAGAACGTCCATAGTTCTTTTCTGAAATAGGAAGGGAAAAACTTTCCTGGAATTTTTTTTTTTCTCTATCCTAATCCAAGAGAATTCTTGTATTTGATACTCTTGCATCTGAACCAATTCCTGGCAAAAATCGGCACCTGATGGCCCTGACATTCCCCTACGACCCGGCTACGTCATCATTACTTGTCTTGAATGCTTCTAAGAGTAAAAGTTGTCCTCACAAACCAACACGGATCCTTTCAACATGCTTTGTCCTCACTCACATGCATCCTAAGTTAAGCATGCTTAGCTTGAAGCACTCCTATGTTGTGCGATCTCCTGGAAATTTTCATAGGATGCATGTGAATGAGGACAAAGAATGCTGAAAGGACCCGTGTTGGTTTGTCGGGACAATTTTCACTCTTAGAAGCATTCAAGACAAGTAAGGATGATGTAGCCGGGTCGTAGAGGACGCAGGAGAATGTCGGGGCCATCAAGTACCGAATCTGCATTCTGAATCCTGGGCCTGAGTCGTTACACACGATGAATAAAAATCAATCAAAATTTGTGAGATGGGGAAGAGAAATATAATGAATTCATTTGAAAATGCAACTGAAAGTTTGGTTGGTGTGTGTATGTTTTTGTGCAGAACAACAGGTGGAGATCAGTTCCAGAATTTGGGGGGTGGGATCACAATGCGCCTGGAGCAAGCAATTATTCTGTCGTATTTTCTCAAGCTCGTGCAAATAGAAAACAGCAAAAGACTGACTTAACTGAGTTCAAAAGAACCAGCCTAGGGAATGAAAGGGAGTTGATGGCAACTGCGGATAAACATCATCACCAACAGAAACATCACCTTCATCGCCATCGCCACCACCATGAACACCAACACCAACATCGCCACCGTCACCACCATCAACCACCAGCAGATGACTCTGTTGTCCCAGTAAGCACTTTCATTTTTTCTTTTTAGTACAAATAAGTGGAAATGAGTACTTGCCAATTACGAGCTATTCTCACTTTGGCCTGCATCGGTTATTCTTTTCCCACTTTAATCTCAAAATTAGATCTTCAACTGGCTTTTTTTTTTTTTTGAGATAACCTTTCTGACCCTATAACATTTTGGTGCCAAAAAAATCTTTCAGAATATTAAATCTTAAGTAGGTGTGACCACAGATTGAACTCATTCTCTCTAAGTCTCTTAACAAAACCATGGTCATCTTCGACGGGCTAATCCAAACTCTGAACTTAATGAAGCAAACCTAGATTCAACAAGAAGTAAATGTAATATTTGAAAACAGAAGCCGAAGAAAATTTGAATAGAACATAGTACCTGTTGGATTCTGAGGCTGAGGAACAGTTGCTGAATATATCCCTTAACGGAGGGTTATTTTTATACTATACATGGTGGTGGCAACTTCATTTAAAGCCTTCTGTGAAGCTACCTTCCAGTAATTAGAGCTTTTCCCCAAGTTTAACCACAGCTACAACTTTAAAAATAATGCACAATTATCTAACAAATAAGACTACAGTTCTTACAAAGGTAGCGTCTTGTTCCAGCATACAATGAACATAAGGATATTTGTGATAGAATTTATAATAGCAGGCTATCTAACAATCGTTTCGATTCTGATAGTAAAATAGATAACGTAGTACGTATAAGAAACATGAGTGATTACATCTTAACCATTTTTTCGAAAATTAAAAGAATATAAATATTGCACATTTAATCCTTGCTCCTTTATTTTTCTCTTATCCAGCAGAAGCAAAAGAAGATTCTGACCTACATCAATTGTTGTATCAGGCCTTGATATGAGACAGAAGCCAATCTACTCCTCTATGTTTTAGTCATATCATGCTGTTTTTCT TTTTCCTTCTTCTTCTCTGACCAGCTCCGAAGAGTCCACTGCAAGCAGCTTCGATCGACTTCTTCTCCTGTCTCTCGTTTGGGTTTGTGATGTAAAACGAGATTGAGCACCAGAGAACAAGAGAGCTCGAGAACAAGAGAACGAGAGTGCGAGACCGCGAGAAAGAGAGGAATTCAACAAAGAGGAAGAGAGAGCCAAGAGCGAGAACAAAGGCCAACCAACATCTTCTTACCTCCCCCTCTCCTCTGGAGACCTTATGGATCCTCGGACGGAGAACAACAGGTGGAGATCAGTTCCAGAATTTGGGGGGTGGGATCACAATGCGCCTGGAGCAAGCAATTATTCTGTCGTATTTTCTCAAGCTCGTGCAAATAGAAAACAGCAAAAGACTGACTTAACTGAGTTCAAAAGAACCAGCCTAGGGAATGAAAGGGAGTTGATGGCAACTGCGGATAAACATCATCACCAACAGAAACATCACCTTCATCGCCATCGCCACCACCATGAACACCAACACCAACATCGCCACCGTCACCACCATCAACCACCAGCAGATGACTCTGTTGTCCCACAGAAGCAAAAGAAGATTCTGACCTACATCAATTGTTGTATCAGGCCTTGATATGAGACAGAAGCCAATCTACTCCTCTATGTTTTAGTCATATCATGCTGTTTTTCT ATGGATCCTCGGACGGAGAACAACAGGTGGAGATCAGTTCCAGAATTTGGGGGGTGGGATCACAATGCGCCTGGAGCAAGCAATTATTCTGTCGTATTTTCTCAAGCTCGTGCAAATAGAAAACAGCAAAAGACTGACTTAACTGAGTTCAAAAGAACCAGCCTAGGGAATGAAAGGGAGTTGATGGCAACTGCGGATAAACATCATCACCAACAGAAACATCACCTTCATCGCCATCGCCACCACCATGAACACCAACACCAACATCGCCACCGTCACCACCATCAACCACCAGCAGATGACTCTGTTGTCCCACAGAAGCAAAAGAAGATTCTGACCTACATCAATTGTTGTATCAGGCCTTGA MDPRTENNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMATADKHHHQQKHHLHRHRHHHEHQHQHRHRHHHQPPADDSVVPQKQKKILTYINCCIRP Homology
BLAST of Lsi10G011000 vs. ExPASy TrEMBL
Match: A0A0A0KK09 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G430670 PE=4 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 5.9e-43 Identity = 99/133 (74.44%), Postives = 106/133 (79.70%), Query Frame = 0
BLAST of Lsi10G011000 vs. ExPASy TrEMBL
Match: A0A6J1JEB9 (dendritic arbor reduction protein 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483749 PE=4 SV=1) HSP 1 Score: 152.1 bits (383), Expect = 1.4e-33 Identity = 84/121 (69.42%), Postives = 97/121 (80.17%), Query Frame = 0
BLAST of Lsi10G011000 vs. ExPASy TrEMBL
Match: A0A6J1FT95 (dendritic arbor reduction protein 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448272 PE=4 SV=1) HSP 1 Score: 152.1 bits (383), Expect = 1.4e-33 Identity = 85/123 (69.11%), Postives = 98/123 (79.67%), Query Frame = 0
BLAST of Lsi10G011000 vs. ExPASy TrEMBL
Match: A0A6J1JCC4 (dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483749 PE=4 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 1.0e-31 Identity = 83/121 (68.60%), Postives = 96/121 (79.34%), Query Frame = 0
BLAST of Lsi10G011000 vs. ExPASy TrEMBL
Match: A0A6J1FX29 (dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448272 PE=4 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 1.0e-31 Identity = 84/123 (68.29%), Postives = 97/123 (78.86%), Query Frame = 0
BLAST of Lsi10G011000 vs. NCBI nr
Match: XP_038901151.1 (lateral signaling target protein 2 homolog isoform X1 [Benincasa hispida]) HSP 1 Score: 196.4 bits (498), Expect = 1.4e-46 Identity = 105/127 (82.68%), Postives = 110/127 (86.61%), Query Frame = 0
BLAST of Lsi10G011000 vs. NCBI nr
Match: XP_038901152.1 (lateral signaling target protein 2 homolog isoform X2 [Benincasa hispida]) HSP 1 Score: 190.3 bits (482), Expect = 9.9e-45 Identity = 104/127 (81.89%), Postives = 109/127 (85.83%), Query Frame = 0
BLAST of Lsi10G011000 vs. NCBI nr
Match: KAG6605945.1 (hypothetical protein SDJN03_03262, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035891.1 hypothetical protein SDJN02_02690, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 167.5 bits (423), Expect = 6.9e-38 Identity = 93/126 (73.81%), Postives = 102/126 (80.95%), Query Frame = 0
BLAST of Lsi10G011000 vs. NCBI nr
Match: XP_023512837.1 (dendritic arbor reduction protein 1 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 157.5 bits (397), Expect = 7.1e-35 Identity = 87/123 (70.73%), Postives = 100/123 (81.30%), Query Frame = 0
BLAST of Lsi10G011000 vs. NCBI nr
Match: KAG6570425.1 (hypothetical protein SDJN03_29340, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010301.1 hypothetical protein SDJN02_27094 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 154.8 bits (390), Expect = 4.6e-34 Identity = 86/123 (69.92%), Postives = 99/123 (80.49%), Query Frame = 0
BLAST of Lsi10G011000 vs. TAIR 10
Match: AT5G19473.1 (RPM1-interacting protein 4 (RIN4) family protein ) HSP 1 Score: 94.7 bits (234), Expect = 5.3e-20 Identity = 59/122 (48.36%), Postives = 74/122 (60.66%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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