Lsi10G009580 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G009580
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Homeobox protein cut-like 1
Location	chr10: 13943459 .. 13946476 (+)
RNA-Seq Expression	Lsi10G009580
Synteny	Lsi10G009580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTAAGATCTGCCACCGACTGAAAACGAAACTTGGGGATAATGGTTTTCAATTTTCTTTTAATAAAAAAGAAGCAATTGACGTCCCAAGATCCACATCGAAATCTAGAATTGCGAACGAAAAATTAAATGAAAAGCGAGAAAATCAAAATTATAATTCCTTACCTGTTGTTGAATTTTGGCGAAGTCCGCTGGGGACATGCGACTCATCTGTTCCTGAGCCAGTCTCATCAGCTCCGGATCCATCATTCCTGATCGATGCAAAATCTTCCTCTGCCGTACTCGATTCAGTAAACAAGTTACTGATCACTTGTTCTTCAGGGAGAGTCGGTGAATAGGAAATAATAATGAATAAAGGTGAAGAAGGAGGATCTAGGAATTTGAGGGAGAGGGAATTTTCCTACAAATCATTAGAAGACAAAAGATAAGCCCTAAAGTCTGAATTGGAGGCCGCCACTGGAAGCTGTGAATTGGAATTGGAATGAAGACGGAACATTCTGTAAGATTACCTGAAAAAGCTTTTGAGAATTTGTCTTGTATTGCCGTTGATCTGTTGGAATTATGAAAGGATTTTGCGTACATACGGATGATGAAGAAACCAAAATCAACGAGGAACACCAATTTCTGTCAATTCCCGGTCCCAATTGACCCGCCCTTTTAACTTCTTCCTATTTCTATATATATATATTACCCATCCTATTTTTGTAAATATCAGCTTTTTTTATTATTGTTATTTTTGTACAATAATTTTTTTTTTTTATTATTATTATTAGTTCTATTCTATTATAGATATGTCATATTTTACTCTTTTTTTTTATAGTCATGTTTTACTTCAACATCTGGGGTTCAATTTATTGTGTGGTATATAGTATCTAATTTTAGGTTAATTTTCTTTTATTTTCTATATTTTTAAATATTCAATTTTAGTATTATAAGGTCAACCTATATTTTATGTATTCTGAAGTTTGTTCAAATTTAGTTCTTGCACTTTCAAAGGTATAATATAATTTTAATTTATATACTTTCCAAAAGATTTTAAATTTAATCTCTCCTACTAGTTTTTTTTTTTTTTTTTACTCAACATACTTTTTATTGTTGTTGGGTTGAGTTTGTGATTATATCTTATCTTGGTTTAAATACTTCAATAAATATTATTTTAGTGTAGTTAGAAACTTAGTCAATTTTAGTTCAAATACTTCAATAAGTATTAATTTTAGTCTTTTGAAGGTAATTGTTATCGATTATCAAAATTAGTTACTTAATAATAATAATAAAAAATATCAAACTAATTACAAATGTAGAAAAATTTTATTATCTATCAACAATAGACCGTGAGAACATATTTTAGTTCACATTATTTTTTTTTGTTCACTTTTTTTTTTTTTTAGATCAATAATTTGCATTAGATCACTTTAAATAGGCTTCATTTTAGTTCAACAAGGTGAAAAGTTGAAGCATATATTTTAGCAGGATAAAGGTGCTAGACCAAATTGCCACTAATCTTGGAATTGTGTTATTAAAAAATTTGAAGTTTTAATAATTTTATTTAATTAGTAATATTTGGTGCAGATTTTTTATGTACAACAATGGATGAAAGATCAAACTTCCAGAATCTTTAATTTTTAAATGAGATGAAACTTCAAAAATTTGTAATTTTTAGAGTGAATGTGTCAATAATTATCATTAAGCTAAGTTCTTATAAGTATTCTTCTACCGACCCATCAAGATGGTTTAATTAGCACATTTGTAGTGAATTTAATTGGCAATTGGACACTATAAAATTGAAAAATGTGCTATGGAATTCCAAATATTATTAACATATGGATTAGAGGAAGGTTTTATTAAGCAGAGATTGATTGGGGAATGGAAAAGGGATGAAGGAATCAGAGTGAATGTTGAGCAATAAAGTGGTTGATGAGAAGCATTAATTGGTTAGAAGCTTCAGAATTTGGATCAATGGTGAAGAATCCGTGTTGTTTTCCTTCAAAATCCACCAATTCTATCTTCTTCCCCTGTTTCTTCAGCTTCTCTGCATACTCCACCGCTCGATCTTTCAACAGATCAGCGCCGCCCACCACCACCATTATCGGATCCATTTCCACCGCCTCCAAGTTCCGGCTTCTCGGTCCGAACACGTTCACAAGAGGATGGTCGGTGCTGCTTCCGATCGGGATCGACAATCTCCAAAACCTGCTCAATGGTCAAAACCAAACCCTAGATTCATTGAAATCGAAACTCAAATTGCAGTTCAAATTCAAATTTCATAATCTGATTTCAACCTATCGATGAGCTCCAGATTCAAGAAGGCTTCTTTGGGACCTTCTGCCTCGGAACGAGTCCTCACCGTCCCGCCGAAGAACGGCGCCAGGAGAACGTAGCCTCTCACTCGGACTGGCGCTAACTCAGGCGAACCCAGGCCAAGTCCTGCCGCAAGATGGTGCGCGATGTTCCCACCGGCGGAGTCTCCGCTGATGAAAACTCTGCTGAAATCGGCCACGTCGGCCAGCCAGGGATCGGGGTGGTCCGATTCAGCTTGGGCTTGTAGCCACCGGAGAGCCGCGAAGCCGTCATCGATGGCGGCCGGAAGGCGATTCTCGGGAGCGAGACGGTAGTCCGGGGAGATGACGAGAGCAGGAAGCTCGGCGGCGAGGCGAAAGCAGTAGTTCTGGCAATTGGGCCAAGTGCGGGAGCCGATGCAGAAGCCGCCGCCGTGAATGTAGAAAAAGAGGGGAAGCTTGGAAGAAGAAATGGCAGCAGGCTTGTAGAGACGGAGGTGAAGATGGTGGATGGGGTCAAAGAGAAGGTCTTTCCATAGAACGGATCCGTCGTCGAGGACAGGGACGTTGAAGCTTGGATTGGAGGAGCGGACTATGGAGCCATCGCTGTAAACGCGGAGGACACCACGGCACTCATCGACTTCAAAGGGAGTGGTGGCCATGGCTTCAAGTCAACACAGAAGAGAAGAGAAGAGATGAGAACGAAAGGTGGAAAAAGGGAAGAATTAAAGGAGAGATAA

mRNA sequence

ATGAAAGCAATTGACGTCCCAAGATCCACATCGAAATCTAGAATTGCGAACGAAAAATTAAATGAAAAGCGAGAAAATCAAAATTATAATTCCTTACCTGTTGTTGAATTTTGGCGAAGTCCGCTGGGGACATGCGACTCATCTGTTCCTGAGCCAGTCTCATCAGCTCCGGATCCATCATTCCTGATCGATGCAAAATCTTCCTCTGCCGTACTCGATTCAGTAAACAACTTCTCTGCATACTCCACCGCTCGATCTTTCAACAGATCAGCGCCGCCCACCACCACCATTATCGGATCCATTTCCACCGCCTCCAAGTTCCGGCTTCTCGGTCCGAACACGTTCACAAGAGGATGGTCGGTGCTGCTTCCGATCGGGATCGACAATCTCCAAAACCTGCTCAATGGTCAAAACCAAACCCTAGATTCATTGAAATCGAAACTCAAATTGCAATTCAAGAAGGCTTCTTTGGGACCTTCTGCCTCGGAACGAGTCCTCACCGTCCCGCCGAAGAACGGCGCCAGGAGAACGCGAACCCAGGCCAAGTCCTGCCGCAAGATGGTGCGCGATGTTCCCACCGGCGGAGTCTCCGCTGATGAAAACTCTGCTGAAATCGGCCACGTCGGCCAGCCAGGGATCGGGGTGCCACCGGAGAGCCGCGAAGCCGTCATCGATGGCGGCCGGAAGGCGATTCTCGGGAGCGAGACGGTAGTCCGGGGAGATGACGAGAGCAGGAAGCTCGGCGGCGAGGCGAAAGCAGTAGTTCTGGCAATTGGGCCAAGTGCGGGAGCCGATGCAGAAGCCGCCGCCGTGAATGTAGAAAAAGAGGGGAAGCTTGGAAGAAGAAATGGCAGCAGGCTTGTAGAGACGGAGGTGAAGATGGTGGATGGGGTCAAAGAGAAGAACGGATCCGTCGTCGAGGACAGGGACGTTGAAGCTTGGATTGGAGGAGCGGACTATGGAGCCATCGCTGTAAACGCGGAGGACACCACGGCACTCATCGACTTCAAAGGGAGTGGTGGCCATGGCTTCAAGTCAACACAGAAGAGAAGAGAAGAGATGAGAACGAAAGGTGGAAAAAGGGAAGAATTAAAGGAGAGATAA

Coding sequence (CDS)

ATGAAAGCAATTGACGTCCCAAGATCCACATCGAAATCTAGAATTGCGAACGAAAAATTAAATGAAAAGCGAGAAAATCAAAATTATAATTCCTTACCTGTTGTTGAATTTTGGCGAAGTCCGCTGGGGACATGCGACTCATCTGTTCCTGAGCCAGTCTCATCAGCTCCGGATCCATCATTCCTGATCGATGCAAAATCTTCCTCTGCCGTACTCGATTCAGTAAACAACTTCTCTGCATACTCCACCGCTCGATCTTTCAACAGATCAGCGCCGCCCACCACCACCATTATCGGATCCATTTCCACCGCCTCCAAGTTCCGGCTTCTCGGTCCGAACACGTTCACAAGAGGATGGTCGGTGCTGCTTCCGATCGGGATCGACAATCTCCAAAACCTGCTCAATGGTCAAAACCAAACCCTAGATTCATTGAAATCGAAACTCAAATTGCAATTCAAGAAGGCTTCTTTGGGACCTTCTGCCTCGGAACGAGTCCTCACCGTCCCGCCGAAGAACGGCGCCAGGAGAACGCGAACCCAGGCCAAGTCCTGCCGCAAGATGGTGCGCGATGTTCCCACCGGCGGAGTCTCCGCTGATGAAAACTCTGCTGAAATCGGCCACGTCGGCCAGCCAGGGATCGGGGTGCCACCGGAGAGCCGCGAAGCCGTCATCGATGGCGGCCGGAAGGCGATTCTCGGGAGCGAGACGGTAGTCCGGGGAGATGACGAGAGCAGGAAGCTCGGCGGCGAGGCGAAAGCAGTAGTTCTGGCAATTGGGCCAAGTGCGGGAGCCGATGCAGAAGCCGCCGCCGTGAATGTAGAAAAAGAGGGGAAGCTTGGAAGAAGAAATGGCAGCAGGCTTGTAGAGACGGAGGTGAAGATGGTGGATGGGGTCAAAGAGAAGAACGGATCCGTCGTCGAGGACAGGGACGTTGAAGCTTGGATTGGAGGAGCGGACTATGGAGCCATCGCTGTAAACGCGGAGGACACCACGGCACTCATCGACTTCAAAGGGAGTGGTGGCCATGGCTTCAAGTCAACACAGAAGAGAAGAGAAGAGATGAGAACGAAAGGTGGAAAAAGGGAAGAATTAAAGGAGAGATAA

Protein sequence

MKAIDVPRSTSKSRIANEKLNEKRENQNYNSLPVVEFWRSPLGTCDSSVPEPVSSAPDPSFLIDAKSSSAVLDSVNNFSAYSTARSFNRSAPPTTTIIGSISTASKFRLLGPNTFTRGWSVLLPIGIDNLQNLLNGQNQTLDSLKSKLKLQFKKASLGPSASERVLTVPPKNGARRTRTQAKSCRKMVRDVPTGGVSADENSAEIGHVGQPGIGVPPESREAVIDGGRKAILGSETVVRGDDESRKLGGEAKAVVLAIGPSAGADAEAAAVNVEKEGKLGRRNGSRLVETEVKMVDGVKEKNGSVVEDRDVEAWIGGADYGAIAVNAEDTTALIDFKGSGGHGFKSTQKRREEMRTKGGKREELKER

Homology

[Close]

BLAST of Lsi10G009580 vs. ExPASy TrEMBL
Match: A0A498IP91 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_005544 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.2e-23
Identity = 87/204 (42.65%), Postives = 128/204 (62.75%), Query Frame = 0


Query: 171 KNGARR----TRTQAKSCRKMVRDVPTGGVSADENSAEIG----HVGQPGIGVPP-ESRE 230
           KNG +     TRT  +  R+++ ++PT  V+ +++   I      +   G+G+ P  SRE
Sbjct: 22  KNGTKSTYPLTRTGPELNRQVMNNIPTSRVTRNKHVHNISPPRVWIVSIGLGLKPLHSRE 81

Query: 231 AVIDGGRKAILGSETVVRGDDESRKLGGEAKAVVLAIGPSAGADAEAAAVNVEKEGKL-G 290
           A++DG R+A+   E +VR +D++ +LGGE KAVVLA+ P A ADAEA AV+VE++ +L G
Sbjct: 82  AIVDGSREAVFRREAIVRCNDDALELGGEMKAVVLAVWPRARADAEAVAVDVEEDWELFG 141

Query: 291 RRNG-----SRLVETEVKMVDGVKEK----NGSVVEDRDVEAWIGGADYGAIAVNAEDTT 350
           +R G     S LVE E++++  V+      NG+VV D DVEAW G AD GA+AV+AE+  
Sbjct: 142 QRRGGVCRCSGLVEAELELIGWVENDVFPGNGAVVVDGDVEAWFGRADDGAVAVDAENVA 201

Query: 351 ALIDFKGSGGHGFKSTQKRREEMR 356
           A   F G G +G KS +KR +E R
Sbjct: 202 AF--FVGQGSNG-KSGKKRSKEAR 222

[Close]

BLAST of Lsi10G009580 vs. ExPASy TrEMBL
Match: A0A7N0VG02 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.8e-19
Identity = 73/170 (42.94%), Postives = 108/170 (63.53%), Query Frame = 0


Query: 190 DVPTGGVSADENSAEIGHVGQPGIGV--------PPESREAVIDGGRKAILGSETVVRGD 249
           +VPT GV+ DE+ ++I H  QP +          P    E ++D   +A+L  + VV  +
Sbjct: 3   NVPTCGVTGDEHVSKISHASQPCVWTVCHCLILQPLYRAEPILDCCGEAVLRRQPVVGCN 62

Query: 250 DESRKLGGEAKAVVLAIGPSAGADAEAAAVNVEKEGKLGRRNG-SRLVETEVKMVDGVKE 309
           D   ++  +A+AVVLA+GPS GADAEAAAV+V ++G+ GR  G   LVE E+++V GV++
Sbjct: 63  DHGLQVFAKAEAVVLAVGPSTGADAEAAAVDVVEDGERGRGGGVGWLVEAELEVVGGVED 122

Query: 310 ----KNGSVVEDRDVEAWIGGADYGAIAVNAEDTTALIDF---KGSGGHG 344
               +NG+V+ DRD EA +GGAD GAIAV++E+  A I F    G+ G+G
Sbjct: 123 HVFPENGAVIVDRDGEARMGGADDGAIAVDSENAPAFIYFMRKTGADGNG 172

[Close]

BLAST of Lsi10G009580 vs. ExPASy TrEMBL
Match: A0A540N3L9 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008768 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.1e-18
Identity = 71/169 (42.01%), Postives = 104/169 (61.54%), Query Frame = 0


Query: 190 DVPTGGVSADENSAEIGHVGQP-------GIGVPP-ESREAVIDGGRKAILGSETVVRGD 249
           ++PT  V+ +++   + H+  P       G+G+ P  SREA++DG  +A+   E +VR +
Sbjct: 3   NIPTSRVTRNKH---VRHISPPRVQIVSLGLGLKPLHSREAIVDGNLEAVFRREAIVRCN 62

Query: 250 DESRKLGGEAKAVVLAIGPSAGADAEAAAVNVEKEGKL-GRRNG-----SRLVETEVKMV 309
           D++ + GGE KAVVLA+ P   ADAEA  V VE++G+L G+R G     S LVE E++++
Sbjct: 63  DDALEQGGEMKAVVLAVWPRVRADAEATTVEVEEDGELFGQRRGGVCRCSGLVEAELELI 122

Query: 310 DGVKEK----NGSVVEDRDVEAWIGGADYGAIAVNAEDTTALIDFKGSG 341
             V+      NG+VV DRDVEAW G A+ GA AV+AE+  A   F G G
Sbjct: 123 GWVENDVFPGNGAVVVDRDVEAWFGRANDGAFAVDAENAAAF--FVGQG 166

[Close]

BLAST of Lsi10G009580 vs. ExPASy TrEMBL
Match: A0A199V875 (Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_02830 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-14
Identity = 90/277 (32.49%), Postives = 125/277 (45.13%), Query Frame = 0


Query: 13  SRIANEKLNEKRENQNYNSLPVVEFWRSPLGTCDSSVPEPVSSAPDPSFLIDAKSSSAVL 72
           +++      E   N + N L +     SP G+    V +   S P  S      +SS   
Sbjct: 2   TKLVKHSQAESLRNSSMNRLMIRT--SSPAGSDHGFVAKKPCSCPWIS------TSSTGF 61

Query: 73  DSVNNFSAYSTARSFNRSAPPTTTIIGSISTASKFRLLGPNTFTRGWSV-LLPIGIDNLQ 132
            S   F+AYS  RS  R+ P        +S      L GPN    GWS+  +P+G   +Q
Sbjct: 62  PSSLIFAAYSACRSRRRTGP--------VSNGPGIGLSGPNGLKSGWSLATVPVGHLQIQ 121

Query: 133 NLLNGQNQTLDSLKSKLKLQFKKASLGPSASERVLTVPPKNGARRTRTQAKSCRKMVRDV 192
             +               LQF+    GP          P +  R    + +    +V DV
Sbjct: 122 ERVG------------RALQFRP---GPDDE-------PADADRVQAGRPEPDGHVVGDV 181

Query: 193 PTGGVSADENSAEIGHVGQPGIG---------VPPESREAVIDGGRKAILGSETVVRGDD 252
             G V+ DE+ AE+G   QPG+G          P E   AV+DGG +A+LG E VV GDD
Sbjct: 182 APGRVAGDEDDAEVGGFRQPGVGSGAGFGLGFEPQERGSAVLDGGGEAVLGGEAVVGGDD 240

Query: 253 ESRKLGGEAKAVVLAIGPSAGADAEAAAVNVEKEGKL 280
           E  +LGGEA+A  + +GP   ADAEAAAV V++ G+L
Sbjct: 242 EYAELGGEAEAAGVEVGPRPRADAEAAAVEVDEHGEL 240

[Close]

BLAST of Lsi10G009580 vs. ExPASy TrEMBL
Match: K3ZVA7 (Uncharacterized protein OS=Setaria italica OX=4555 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.8e-09
Identity = 59/166 (35.54%), Postives = 88/166 (53.01%), Query Frame = 0


Query: 148 LKLQFKKASLGPSASERVLTVPPKNGARRTRTQAKSCRKMVRDVPTGGVSADENSAEIGH 207
           L+L  +    G    E  +   P  GA      A+    +V DV  G V++DE++ E+G 
Sbjct: 114 LQLGARPGLAGHGRHEEDVPAEPDGGAE--AGLAERGGDVVGDVAAGRVASDEDAGEVGG 173

Query: 208 VGQPGIG-----VPPESREAVIDGGRKAILGSETVVRGDDESRKLGGEAKAVVLAIGPSA 267
           VG+PG+G      P     AV+ GG  A+L  E VV G+    +LGGEA+A  +  GP+A
Sbjct: 174 VGEPGVGGGSGAEPRHGLGAVLLGGGDAVLRREAVVEGEHHGGELGGEAEAAGVEAGPAA 233

Query: 268 GADAEAAAVNV--EKEGKLGRRNGSRLVETEVKMVDGVKEKNGSVV 307
           GADAEAAAV V   ++ ++  R   R VE +V+ V  +   + +V+
Sbjct: 234 GADAEAAAVEVGHHRDPRVVGR-AERPVEADVEAVLRLPRHSSAVI 276

[Close]

BLAST of Lsi10G009580 vs. NCBI nr
Match: RXH83291.1 (hypothetical protein DVH24_005544 [Malus domestica])

HSP 1 Score: 117.9 bits (294), Expect = 1.9e-22
Identity = 87/204 (42.65%), Postives = 128/204 (62.75%), Query Frame = 0


Query: 171 KNGARR----TRTQAKSCRKMVRDVPTGGVSADENSAEIG----HVGQPGIGVPP-ESRE 230
           KNG +     TRT  +  R+++ ++PT  V+ +++   I      +   G+G+ P  SRE
Sbjct: 22  KNGTKSTYPLTRTGPELNRQVMNNIPTSRVTRNKHVHNISPPRVWIVSIGLGLKPLHSRE 81

Query: 231 AVIDGGRKAILGSETVVRGDDESRKLGGEAKAVVLAIGPSAGADAEAAAVNVEKEGKL-G 290
           A++DG R+A+   E +VR +D++ +LGGE KAVVLA+ P A ADAEA AV+VE++ +L G
Sbjct: 82  AIVDGSREAVFRREAIVRCNDDALELGGEMKAVVLAVWPRARADAEAVAVDVEEDWELFG 141

Query: 291 RRNG-----SRLVETEVKMVDGVKEK----NGSVVEDRDVEAWIGGADYGAIAVNAEDTT 350
           +R G     S LVE E++++  V+      NG+VV D DVEAW G AD GA+AV+AE+  
Sbjct: 142 QRRGGVCRCSGLVEAELELIGWVENDVFPGNGAVVVDGDVEAWFGRADDGAVAVDAENVA 201

Query: 351 ALIDFKGSGGHGFKSTQKRREEMR 356
           A   F G G +G KS +KR +E R
Sbjct: 202 AF--FVGQGSNG-KSGKKRSKEAR 222

[Close]

BLAST of Lsi10G009580 vs. NCBI nr
Match: TQE05635.1 (hypothetical protein C1H46_008768 [Malus baccata])

HSP 1 Score: 102.8 bits (255), Expect = 6.3e-18
Identity = 71/169 (42.01%), Postives = 104/169 (61.54%), Query Frame = 0


Query: 190 DVPTGGVSADENSAEIGHVGQP-------GIGVPP-ESREAVIDGGRKAILGSETVVRGD 249
           ++PT  V+ +++   + H+  P       G+G+ P  SREA++DG  +A+   E +VR +
Sbjct: 3   NIPTSRVTRNKH---VRHISPPRVQIVSLGLGLKPLHSREAIVDGNLEAVFRREAIVRCN 62

Query: 250 DESRKLGGEAKAVVLAIGPSAGADAEAAAVNVEKEGKL-GRRNG-----SRLVETEVKMV 309
           D++ + GGE KAVVLA+ P   ADAEA  V VE++G+L G+R G     S LVE E++++
Sbjct: 63  DDALEQGGEMKAVVLAVWPRVRADAEATTVEVEEDGELFGQRRGGVCRCSGLVEAELELI 122

Query: 310 DGVKEK----NGSVVEDRDVEAWIGGADYGAIAVNAEDTTALIDFKGSG 341
             V+      NG+VV DRDVEAW G A+ GA AV+AE+  A   F G G
Sbjct: 123 GWVENDVFPGNGAVVVDRDVEAWFGRANDGAFAVDAENAAAF--FVGQG 166

[Close]

BLAST of Lsi10G009580 vs. NCBI nr
Match: OAY73279.1 (hypothetical protein ACMD2_02830 [Ananas comosus])

HSP 1 Score: 90.9 bits (224), Expect = 2.5e-14
Identity = 90/277 (32.49%), Postives = 125/277 (45.13%), Query Frame = 0


Query: 13  SRIANEKLNEKRENQNYNSLPVVEFWRSPLGTCDSSVPEPVSSAPDPSFLIDAKSSSAVL 72
           +++      E   N + N L +     SP G+    V +   S P  S      +SS   
Sbjct: 2   TKLVKHSQAESLRNSSMNRLMIRT--SSPAGSDHGFVAKKPCSCPWIS------TSSTGF 61

Query: 73  DSVNNFSAYSTARSFNRSAPPTTTIIGSISTASKFRLLGPNTFTRGWSV-LLPIGIDNLQ 132
            S   F+AYS  RS  R+ P        +S      L GPN    GWS+  +P+G   +Q
Sbjct: 62  PSSLIFAAYSACRSRRRTGP--------VSNGPGIGLSGPNGLKSGWSLATVPVGHLQIQ 121

Query: 133 NLLNGQNQTLDSLKSKLKLQFKKASLGPSASERVLTVPPKNGARRTRTQAKSCRKMVRDV 192
             +               LQF+    GP          P +  R    + +    +V DV
Sbjct: 122 ERVG------------RALQFRP---GPDDE-------PADADRVQAGRPEPDGHVVGDV 181

Query: 193 PTGGVSADENSAEIGHVGQPGIG---------VPPESREAVIDGGRKAILGSETVVRGDD 252
             G V+ DE+ AE+G   QPG+G          P E   AV+DGG +A+LG E VV GDD
Sbjct: 182 APGRVAGDEDDAEVGGFRQPGVGSGAGFGLGFEPQERGSAVLDGGGEAVLGGEAVVGGDD 240

Query: 253 ESRKLGGEAKAVVLAIGPSAGADAEAAAVNVEKEGKL 280
           E  +LGGEA+A  + +GP   ADAEAAAV V++ G+L
Sbjct: 242 EYAELGGEAEAAGVEVGPRPRADAEAAAVEVDEHGEL 240

[Close]

BLAST of Lsi10G009580 vs. NCBI nr
Match: ACN35832.1 (unknown [Zea mays])

HSP 1 Score: 66.6 bits (161), Expect = 5.0e-07
Identity = 46/125 (36.80%), Postives = 67/125 (53.60%), Query Frame = 0


Query: 181 AKSCRKMVRDVPTGGVSADENSAEIGHVGQPGIGV-------PPESREAVIDGGRKAILG 240
           A+  R +V DV    V+  E++ E+G VG+PG+         P     AV+ GGR+ +LG
Sbjct: 210 AEPDRDVVGDVAARRVARHEDAREVGRVGEPGVAAAGGGGAQPGHGPGAVLLGGREPVLG 269

Query: 241 SETVVRGDDESRKLGGEAKAVVLAIGPSAGADAEAAAVNVEKEGK---LGRRNGSRLVET 296
            + VV G+    +LG +A+A  + +GP  G DAEAAAV V   G    +GR    R V+ 
Sbjct: 270 RQAVVEGEHHGGELGAQAEAPGVEVGPPPGPDAEAAAVEVGHHGDPRVVGRAQVPRPVQA 329

[Close]

BLAST of Lsi10G009580 vs. NCBI nr
Match: CAB3455749.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-05
Identity = 38/94 (40.43%), Postives = 49/94 (52.13%), Query Frame = 0


Query: 84  ARSFNRSAPPTTTIIGSISTASKFRLLGPNTFTRGWSVLLPIGIDNLQNLLNGQNQTLDS 143
           A + + S PP TT  G  S A++  L GPN F  GWS++ P G D+LQNL          
Sbjct: 2   AANLSASRPPATTRTGRSSAAARSGLSGPNGFAAGWSLVAPTGNDSLQNL---------- 61

Query: 144 LKSKLKLQFKKASLGPSASERVLTVPPKNGARRT 178
                + +F  AS G SAS+ V   PPKNG  +T
Sbjct: 62  ---STRSRFGNASAGHSASDEVRRTPPKNGIIKT 82

The following BLAST results are available for this feature:

BLAST of Lsi10G009580 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi10G009580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A498IP91	9.2e-23	42.65	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_005544 PE=4 SV=1	[more]
A0A7N0VG02	2.8e-19	42.94	Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1	[more]
A0A540N3L9	3.1e-18	42.01	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008768 PE=4 SV=1	[more]
A0A199V875	1.2e-14	32.49	Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_02830 PE=4 SV=1	[more]
K3ZVA7	5.8e-09	35.54	Uncharacterized protein OS=Setaria italica OX=4555 PE=4 SV=1	[more]

BLAST of Lsi10G009580 vs. NCBI nr


Match Name	E-value	Identity	Description
RXH83291.1	1.9e-22	42.65	hypothetical protein DVH24_005544 [Malus domestica]	[more]
TQE05635.1	6.3e-18	42.01	hypothetical protein C1H46_008768 [Malus baccata]	[more]
OAY73279.1	2.5e-14	32.49	hypothetical protein ACMD2_02830 [Ananas comosus]	[more]
ACN35832.1	5.0e-07	36.80	unknown [Zea mays]	[more]
CAB3455749.1	1.6e-05	40.43	unnamed protein product [Digitaria exilis]	[more]

BLAST of Lsi10G009580 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 127..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 345..367
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 337..367
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G009580.1	Lsi10G009580.1	mRNA