Lsi10G009020 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G009020
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	transcription factor bHLH162-like
Location	chr10: 13474047 .. 13474632 (+)
RNA-Seq Expression	Lsi10G009020
Synteny	Lsi10G009020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAAATCGCAGAAACAAGATGAAATCACTTTACTCAAAATTGAATTCCCTCCTCCCAACCCATCACTCAAATGTTTGCTTTTTTTCCTTTTTTTTTTTCTTTTTTCTTTTTTTCTTCCCTTTTTTTTTTTCTTTTTTCTTTTTTTCTTCCCATTTTTTATTACGTTCTTAATTGGGTCTTCACTAAAATTTTGTAGGAGTTGCCACTATCAGTGTCAGATCAGATAGATGAAGCAATAAAGTACATTAAATCACTGGAGATGAAGTTGAAGAACGATGAGGAGAAGAAGGAGAGATTTCTGAGGAGATCGAAAATGCCGTCGTCGTCGTCGTCCACCTCACCATCGATGAGCCAGAATAGGACTGCTCCTGAATTGAAAATCAAAGAGATGGGTTCGGCCGTGGAAGTTGTTTTAACGACTGGGTTGGAGGATCGGTCGATATTTTATGAGATTGTTGGTATTTTTCAGGAGGAGCGAGCTGAGATCATCAATGTCAGTTACTCCGTTCTCGAAAACACCATCGTATATTCGCTCCATGCTGAGGTATATATTCGATGTCCATATATAAGAAATGTGTGA

mRNA sequence

ATGGAGAAAAATCGCAGAAACAAGATGAAATCACTTTACTCAAAATTGAATTCCCTCCTCCCAACCCATCACTCAAATGAGTTGCCACTATCAGTGTCAGATCAGATAGATGAAGCAATAAAGTACATTAAATCACTGGAGATGAAGTTGAAGAACGATGAGGAGAAGAAGGAGAGATTTCTGAGGAGATCGAAAATGCCGTCGTCGTCGTCGTCCACCTCACCATCGATGAGCCAGAATAGGACTGCTCCTGAATTGAAAATCAAAGAGATGGGTTCGGCCGTGGAAGTTGTTTTAACGACTGGGTTGGAGGATCGGTCGATATTTTATGAGATTGTTGGTATTTTTCAGGAGGAGCGAGCTGAGATCATCAATGTCAGTTACTCCGTTCTCGAAAACACCATCGTATATTCGCTCCATGCTGAGGTATATATTCGATGTCCATATATAAGAAATGTGTGA

Coding sequence (CDS)

ATGGAGAAAAATCGCAGAAACAAGATGAAATCACTTTACTCAAAATTGAATTCCCTCCTCCCAACCCATCACTCAAATGAGTTGCCACTATCAGTGTCAGATCAGATAGATGAAGCAATAAAGTACATTAAATCACTGGAGATGAAGTTGAAGAACGATGAGGAGAAGAAGGAGAGATTTCTGAGGAGATCGAAAATGCCGTCGTCGTCGTCGTCCACCTCACCATCGATGAGCCAGAATAGGACTGCTCCTGAATTGAAAATCAAAGAGATGGGTTCGGCCGTGGAAGTTGTTTTAACGACTGGGTTGGAGGATCGGTCGATATTTTATGAGATTGTTGGTATTTTTCAGGAGGAGCGAGCTGAGATCATCAATGTCAGTTACTCCGTTCTCGAAAACACCATCGTATATTCGCTCCATGCTGAGGTATATATTCGATGTCCATATATAAGAAATGTGTGA

Protein sequence

MEKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTTGLEDRSIFYEIVGIFQEERAEIINVSYSVLENTIVYSLHAEVYIRCPYIRNV

Homology

[Close]

BLAST of Lsi10G009020 vs. ExPASy Swiss-Prot
Match: F4JIJ7 (Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.5e-19
Identity = 61/150 (40.67%), Postives = 97/150 (64.67%), Query Frame = 0


Query: 1   MEKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERF 60
           +EKNRR +MKSLYS+L SLLP HHS+  PL++ DQ+DEA  YIK L++ ++   E+K   
Sbjct: 19  VEKNRRMQMKSLYSELISLLP-HHSSTEPLTLPDQLDEAANYIKKLQVNVEKKRERKRNL 78

Query: 61  L------RRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTTGLEDRSIFYEIVG 120
           +      + + + SSS S+S  +S  R  P+++I+E GS   + L T LE + +F EI+ 
Sbjct: 79  VATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVTSLEHKFMFCEIIR 138

Query: 121 IFQEE-RAEIINVSYSVLENTIVYSLHAEV 144
           +  EE  AEI +  YS++++ + ++LH +V
Sbjct: 139 VLTEELGAEITHAGYSIVDDAVFHTLHCKV 167

[Close]

BLAST of Lsi10G009020 vs. ExPASy Swiss-Prot
Match: Q9FLI1 (Transcription factor bHLH36 OS=Arabidopsis thaliana OX=3702 GN=BHLH36 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.5e-05
Identity = 43/148 (29.05%), Postives = 79/148 (53.38%), Query Frame = 0


Query: 2   EKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFL 61
           E+ RR +M SLY+ L SLLP H       S SDQ++EA+ YIK L+ K+K    +++  +
Sbjct: 10  ERQRRQEMASLYASLRSLLPLHFIKG-KRSTSDQVNEAVNYIKYLQRKIKELSVRRDDLM 69

Query: 62  ---RRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTT---GLEDRSIFYEIVGI 121
              R S + SS+      +        + +++    VE++L++   G + R  F  ++ +
Sbjct: 70  VLSRGSLLGSSNGDFKEDVEMISGKNHVVVRQCLVGVEIMLSSRCCGGQPR--FSSVLQV 129

Query: 122 FQEERAEIINVSYSVLENTIVYSLHAEV 144
             E    ++N   S++++ +VY++ AEV
Sbjct: 130 LSEYGLCLLNSISSIVDDRLVYTIQAEV 154

[Close]

BLAST of Lsi10G009020 vs. ExPASy Swiss-Prot
Match: Q9XIJ1 (Transcription factor bHLH168 OS=Arabidopsis thaliana OX=3702 GN=BHLH168 PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.0e-04
Identity = 41/145 (28.28%), Postives = 72/145 (49.66%), Query Frame = 0


Query: 2   EKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFL 61
           EK RR +MK L+    S+L +H S    L V   ID+A+ Y+  L+ K+    E K R L
Sbjct: 23  EKERRMRMKHLF----SILSSHVSPTRRLPVPQLIDQAVSYMIQLKEKVNYLNEMKRRML 82

Query: 62  RRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTTGLEDRSI-FYEIVGIFQEER 121
                  S  S+          P+L I+ + S +E+ L   L  + +  +++V +F+EE 
Sbjct: 83  GGEVKNRSEGSS--------LLPKLSIRSLDSIIEMNLVMDLNMKGVMLHKLVSVFEEEG 142

Query: 122 AEIINVSYSVLENTIVYSLHAEVYI 146
           A++++ +   L +   Y++ A+  I
Sbjct: 143 AQVMSANLQNLNDRTFYTIIAQAII 155

[Close]

BLAST of Lsi10G009020 vs. ExPASy TrEMBL
Match: A0A6J1FXP8 (transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111448656 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 5.1e-44
Identity = 105/136 (77.21%), Postives = 120/136 (88.24%), Query Frame = 0


Query: 9   MKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPS 68
           MKSLYSKLNSLLPTHHSNELPLSV DQI+EAIKYIKSLE+KLK DEEKKERF RRS   S
Sbjct: 1   MKSLYSKLNSLLPTHHSNELPLSVLDQIEEAIKYIKSLELKLKKDEEKKERFTRRS---S 60

Query: 69  SSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTTGL-EDRSIFYEIVGIFQEERAEIINVS 128
           SSS  +P+ S+NR  PEL+IKEMGSAVEVVL+TGL EDR IFYEI+ IF EERAEI+NVS
Sbjct: 61  SSSYMAPTRSRNRNGPELRIKEMGSAVEVVLSTGLEEDRFIFYEIIHIFYEERAEIVNVS 120

Query: 129 YSVLENTIVYSLHAEV 144
           YSV+ N+++YSL+AE+
Sbjct: 121 YSVVGNSVLYSLYAEI 133

[Close]

BLAST of Lsi10G009020 vs. ExPASy TrEMBL
Match: A0A5D3BZ69 (Transcription factor bHLH36-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002050 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 7.4e-43
Identity = 103/141 (73.05%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 9   MKSLYSKLNSLLPTHHSN-ELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMP 68
           MKSLYSKLNSLLP+HHSN +LP +V+DQI+ AI YIKSLE+KLK DEEKKER+LRRSK+ 
Sbjct: 1   MKSLYSKLNSLLPSHHSNDQLPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYLRRSKIA 60

Query: 69  SSSSSTSP-----SMSQNRTAPELKIKEMGSAVEVVLTTGLEDRSIFYEIVGIFQEERAE 128
           SSS+++S      S+SQNR  PELKIKEMGSAVEVVL TGLEDRS+FYE + I  EERAE
Sbjct: 61  SSSTASSSSYSALSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERAE 120

Query: 129 IINVSYSVLENTIVYSLHAEV 144
           IINVSYS+L++TI+YSLHAE+
Sbjct: 121 IINVSYSLLDDTILYSLHAEI 141

[Close]

BLAST of Lsi10G009020 vs. ExPASy TrEMBL
Match: A0A5A7V416 (Transcription factor bHLH36-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003780 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 7.4e-43
Identity = 103/141 (73.05%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 9   MKSLYSKLNSLLPTHHSN-ELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMP 68
           MKSLYSKLNSLLP+HHSN +LP +V+DQI+ AI YIKSLE+KLK DEEKKER+LRRSK+ 
Sbjct: 1   MKSLYSKLNSLLPSHHSNDQLPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYLRRSKIA 60

Query: 69  SSSSSTSP-----SMSQNRTAPELKIKEMGSAVEVVLTTGLEDRSIFYEIVGIFQEERAE 128
           SSS+++S      S+SQNR  PELKIKEMGSAVEVVL TGLEDRS+FYE + I  EERAE
Sbjct: 61  SSSTASSSSYSALSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERAE 120

Query: 129 IINVSYSVLENTIVYSLHAEV 144
           IINVSYS+L++TI+YSLHAE+
Sbjct: 121 IINVSYSLLDDTILYSLHAEI 141

[Close]

BLAST of Lsi10G009020 vs. ExPASy TrEMBL
Match: A0A1S4DX24 (transcription factor bHLH36-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC107990944 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 7.4e-43
Identity = 103/141 (73.05%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 9   MKSLYSKLNSLLPTHHSN-ELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMP 68
           MKSLYSKLNSLLP+HHSN +LP +V+DQI+ AI YIKSLE+KLK DEEKKER+LRRSK+ 
Sbjct: 1   MKSLYSKLNSLLPSHHSNDQLPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYLRRSKIA 60

Query: 69  SSSSSTSP-----SMSQNRTAPELKIKEMGSAVEVVLTTGLEDRSIFYEIVGIFQEERAE 128
           SSS+++S      S+SQNR  PELKIKEMGSAVEVVL TGLEDRS+FYE + I  EERAE
Sbjct: 61  SSSTASSSSYSALSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERAE 120

Query: 129 IINVSYSVLENTIVYSLHAEV 144
           IINVSYS+L++TI+YSLHAE+
Sbjct: 121 IINVSYSLLDDTILYSLHAEI 141

[Close]

BLAST of Lsi10G009020 vs. ExPASy TrEMBL
Match: A0A6J1JF05 (transcription factor bHLH162-like OS=Cucurbita maxima OX=3661 GN=LOC111483908 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.3e-42
Identity = 101/136 (74.26%), Postives = 120/136 (88.24%), Query Frame = 0


Query: 9   MKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPS 68
           MKSLYSKLNSLLPTHHSNE+PLSVSDQI+EAIKYIKSLE+KLK +EEKKERF R+S   S
Sbjct: 1   MKSLYSKLNSLLPTHHSNEMPLSVSDQIEEAIKYIKSLELKLKKNEEKKERFTRQS---S 60

Query: 69  SSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTTGL-EDRSIFYEIVGIFQEERAEIINVS 128
           SS  T+P+ S+NR  PEL+IKE+GSAVEVVL+ GL EDR IFYEI+ IF +ERAEI+NVS
Sbjct: 61  SSLYTAPTRSRNRNGPELRIKEIGSAVEVVLSIGLEEDRFIFYEIIHIFYQERAEIVNVS 120

Query: 129 YSVLENTIVYSLHAEV 144
           YSV+ N+++YSLHAE+
Sbjct: 121 YSVVGNSVLYSLHAEI 133

[Close]

BLAST of Lsi10G009020 vs. NCBI nr
Match: XP_038902351.1 (transcription factor bHLH162-like [Benincasa hispida])

HSP 1 Score: 209.1 bits (531), Expect = 2.6e-50
Identity = 115/144 (79.86%), Postives = 127/144 (88.19%), Query Frame = 0


Query: 1   MEKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERF 60
           MEKNRRNKMKSLY+ LNSLLP  HSNELPL+V DQID+AIKYIKSLE+ LK DEEKKER 
Sbjct: 19  MEKNRRNKMKSLYTNLNSLLPISHSNELPLTVLDQIDKAIKYIKSLEINLKKDEEKKERL 78

Query: 61  LRRSKMPSSSSS-TSPSMSQNRTAPELKIKEMGSAVEVVLTTGLEDRSIFYEIVGIFQEE 120
           LR+SK+ SSSSS T+ SMS NR  PELKIKEMGSAVEVVLTTGLEDRSIFYEI+ IF EE
Sbjct: 79  LRKSKLSSSSSSYTALSMSPNRNVPELKIKEMGSAVEVVLTTGLEDRSIFYEIIRIFDEE 138

Query: 121 RAEIINVSYSVLENTIVYSLHAEV 144
           R EIIN+SYS+LENTI+YSLH E+
Sbjct: 139 RVEIINISYSILENTIIYSLHTEI 162

[Close]

BLAST of Lsi10G009020 vs. NCBI nr
Match: XP_038902350.1 (transcription factor bHLH162-like [Benincasa hispida])

HSP 1 Score: 195.3 bits (495), Expect = 3.9e-46
Identity = 113/144 (78.47%), Postives = 125/144 (86.81%), Query Frame = 0


Query: 1   MEKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERF 60
           +EKNRRNKMKSLYS LNSLLPT HSN LPL+VS+QI+E IK IKSLE+KLK DEEKKER 
Sbjct: 93  IEKNRRNKMKSLYSNLNSLLPTPHSN-LPLTVSEQIEEVIKSIKSLEIKLKKDEEKKERL 152

Query: 61  LRRSKMP-SSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTTGLEDRSIFYEIVGIFQEE 120
           LR+SKM  SS S T+ S +QNR  PELKIKEMGSAVEVVLTTGLEDRSIFYEI+ IF EE
Sbjct: 153 LRKSKMSLSSPSYTALSTNQNRNVPELKIKEMGSAVEVVLTTGLEDRSIFYEIIRIFNEE 212

Query: 121 RAEIINVSYSVLENTIVYSLHAEV 144
           R EIINVSYS LE+TI+YSLHAE+
Sbjct: 213 RVEIINVSYSDLESTIIYSLHAEI 235

[Close]

BLAST of Lsi10G009020 vs. NCBI nr
Match: XP_023512282.1 (transcription factor bHLH162-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.4 bits (485), Expect = 5.6e-45
Identity = 104/135 (77.04%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 9   MKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPS 68
           MK LYSKLNSLLPTHHSNELPLSVSDQI+EAIKYIKSLE+KLK DEEKKERF RRS   S
Sbjct: 1   MKLLYSKLNSLLPTHHSNELPLSVSDQIEEAIKYIKSLELKLKKDEEKKERFTRRSS--S 60

Query: 69  SSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTTGLEDRSIFYEIVGIFQEERAEIINVSY 128
           SSS  +P+ ++NR  PEL+IKEMGS VEVVL+TGLEDR IFYEI+ IF EERAEI+NVSY
Sbjct: 61  SSSYMAPTRTRNRNGPELRIKEMGSVVEVVLSTGLEDRFIFYEIIHIFYEERAEIVNVSY 120

Query: 129 SVLENTIVYSLHAEV 144
           SV+ N+++YSLHAE+
Sbjct: 121 SVVGNSVLYSLHAEI 133

[Close]

BLAST of Lsi10G009020 vs. NCBI nr
Match: XP_022944108.1 (transcription factor bHLH162-like [Cucurbita moschata])

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-43
Identity = 105/136 (77.21%), Postives = 120/136 (88.24%), Query Frame = 0


Query: 9   MKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMPS 68
           MKSLYSKLNSLLPTHHSNELPLSV DQI+EAIKYIKSLE+KLK DEEKKERF RRS   S
Sbjct: 1   MKSLYSKLNSLLPTHHSNELPLSVLDQIEEAIKYIKSLELKLKKDEEKKERFTRRS---S 60

Query: 69  SSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTTGL-EDRSIFYEIVGIFQEERAEIINVS 128
           SSS  +P+ S+NR  PEL+IKEMGSAVEVVL+TGL EDR IFYEI+ IF EERAEI+NVS
Sbjct: 61  SSSYMAPTRSRNRNGPELRIKEMGSAVEVVLSTGLEEDRFIFYEIIHIFYEERAEIVNVS 120

Query: 129 YSVLENTIVYSLHAEV 144
           YSV+ N+++YSL+AE+
Sbjct: 121 YSVVGNSVLYSLYAEI 133

[Close]

BLAST of Lsi10G009020 vs. NCBI nr
Match: KAA0062040.1 (transcription factor bHLH36-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 1.5e-42
Identity = 103/141 (73.05%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 9   MKSLYSKLNSLLPTHHSN-ELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFLRRSKMP 68
           MKSLYSKLNSLLP+HHSN +LP +V+DQI+ AI YIKSLE+KLK DEEKKER+LRRSK+ 
Sbjct: 1   MKSLYSKLNSLLPSHHSNDQLPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYLRRSKIA 60

Query: 69  SSSSSTSP-----SMSQNRTAPELKIKEMGSAVEVVLTTGLEDRSIFYEIVGIFQEERAE 128
           SSS+++S      S+SQNR  PELKIKEMGSAVEVVL TGLEDRS+FYE + I  EERAE
Sbjct: 61  SSSTASSSSYSALSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERAE 120

Query: 129 IINVSYSVLENTIVYSLHAEV 144
           IINVSYS+L++TI+YSLHAE+
Sbjct: 121 IINVSYSLLDDTILYSLHAEI 141

[Close]

BLAST of Lsi10G009020 vs. TAIR 10
Match: AT4G20970.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-20
Identity = 61/150 (40.67%), Postives = 97/150 (64.67%), Query Frame = 0


Query: 1   MEKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERF 60
           +EKNRR +MKSLYS+L SLLP HHS+  PL++ DQ+DEA  YIK L++ ++   E+K   
Sbjct: 19  VEKNRRMQMKSLYSELISLLP-HHSSTEPLTLPDQLDEAANYIKKLQVNVEKKRERKRNL 78

Query: 61  L------RRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTTGLEDRSIFYEIVG 120
           +      + + + SSS S+S  +S  R  P+++I+E GS   + L T LE + +F EI+ 
Sbjct: 79  VATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVTSLEHKFMFCEIIR 138

Query: 121 IFQEE-RAEIINVSYSVLENTIVYSLHAEV 144
           +  EE  AEI +  YS++++ + ++LH +V
Sbjct: 139 VLTEELGAEITHAGYSIVDDAVFHTLHCKV 167

[Close]

BLAST of Lsi10G009020 vs. TAIR 10
Match: AT5G51780.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 3.2e-06
Identity = 43/148 (29.05%), Postives = 79/148 (53.38%), Query Frame = 0


Query: 2   EKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFL 61
           E+ RR +M SLY+ L SLLP H       S SDQ++EA+ YIK L+ K+K    +++  +
Sbjct: 10  ERQRRQEMASLYASLRSLLPLHFIKG-KRSTSDQVNEAVNYIKYLQRKIKELSVRRDDLM 69

Query: 62  ---RRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTT---GLEDRSIFYEIVGI 121
              R S + SS+      +        + +++    VE++L++   G + R  F  ++ +
Sbjct: 70  VLSRGSLLGSSNGDFKEDVEMISGKNHVVVRQCLVGVEIMLSSRCCGGQPR--FSSVLQV 129

Query: 122 FQEERAEIINVSYSVLENTIVYSLHAEV 144
             E    ++N   S++++ +VY++ AEV
Sbjct: 130 LSEYGLCLLNSISSIVDDRLVYTIQAEV 154

[Close]

BLAST of Lsi10G009020 vs. TAIR 10
Match: AT1G10586.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 3.6e-05
Identity = 41/145 (28.28%), Postives = 72/145 (49.66%), Query Frame = 0


Query: 2   EKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFL 61
           EK RR +MK L+    S+L +H S    L V   ID+A+ Y+  L+ K+    E K R L
Sbjct: 23  EKERRMRMKHLF----SILSSHVSPTRRLPVPQLIDQAVSYMIQLKEKVNYLNEMKRRML 82

Query: 62  RRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTTGLEDRSI-FYEIVGIFQEER 121
                  S  S+          P+L I+ + S +E+ L   L  + +  +++V +F+EE 
Sbjct: 83  GGEVKNRSEGSS--------LLPKLSIRSLDSIIEMNLVMDLNMKGVMLHKLVSVFEEEG 142

Query: 122 AEIINVSYSVLENTIVYSLHAEVYI 146
           A++++ +   L +   Y++ A+  I
Sbjct: 143 AQVMSANLQNLNDRTFYTIIAQAII 155

[Close]

BLAST of Lsi10G009020 vs. TAIR 10
Match: AT1G10585.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 3.9e-04
Identity = 41/145 (28.28%), Postives = 70/145 (48.28%), Query Frame = 0


Query: 2   EKNRRNKMKSLYSKLNSLLPTHHSNELPLSVSDQIDEAIKYIKSLEMKLKNDEEKKERFL 61
           EK+RR +MK L+    S+L +H S    L V   ID+A  Y+  L+  +   +EKK   L
Sbjct: 23  EKDRRMRMKHLF----SILSSHVSPTRKLPVPHLIDQATSYMIQLKENVNYLKEKKRTLL 82

Query: 62  RRSKMPSSSSSTSPSMSQNRTAPELKIKEMGSAVEVVLTTGLE-DRSIFYEIVGIFQEER 121
           +                 +   P+L I+   S +E+ L   L   R + +E+V IF+EE 
Sbjct: 83  Q--------GELGNLYEGSFLLPKLSIRSRDSTIEMNLIMDLNMKRVMLHELVSIFEEEG 142

Query: 122 AEIINVSYSVLENTIVYSLHAEVYI 146
           A++++ +   L +   Y++ A+  I
Sbjct: 143 AQVMSANLQNLNDRTTYTIIAQAII 155

The following BLAST results are available for this feature:

BLAST of Lsi10G009020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JIJ7	2.5e-19	40.67	Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=...	[more]
Q9FLI1	4.5e-05	29.05	Transcription factor bHLH36 OS=Arabidopsis thaliana OX=3702 GN=BHLH36 PE=2 SV=1	[more]
Q9XIJ1	5.0e-04	28.28	Transcription factor bHLH168 OS=Arabidopsis thaliana OX=3702 GN=BHLH168 PE=3 SV=...	[more]

BLAST of Lsi10G009020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FXP8	5.1e-44	77.21	transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111448656 ...	[more]
A0A5D3BZ69	7.4e-43	73.05	Transcription factor bHLH36-like isoform X1 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7V416	7.4e-43	73.05	Transcription factor bHLH36-like isoform X1 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S4DX24	7.4e-43	73.05	transcription factor bHLH36-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC107990...	[more]
A0A6J1JF05	1.3e-42	74.26	transcription factor bHLH162-like OS=Cucurbita maxima OX=3661 GN=LOC111483908 PE...	[more]

BLAST of Lsi10G009020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902351.1	2.6e-50	79.86	transcription factor bHLH162-like [Benincasa hispida]	[more]
XP_038902350.1	3.9e-46	78.47	transcription factor bHLH162-like [Benincasa hispida]	[more]
XP_023512282.1	5.6e-45	77.04	transcription factor bHLH162-like [Cucurbita pepo subsp. pepo]	[more]
XP_022944108.1	1.1e-43	77.21	transcription factor bHLH162-like [Cucurbita moschata]	[more]
KAA0062040.1	1.5e-42	73.05	transcription factor bHLH36-like isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi10G009020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20970.1	1.8e-20	40.67	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G51780.1	3.2e-06	29.05	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10586.1	3.6e-05	28.28	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10585.1	3.9e-04	28.28	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..83
None	No IPR available	PANTHER	PTHR13935:SF63	HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN	coord: 2..143
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 1..73 e-value: 8.6E-9 score: 37.3
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 1..72
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 1..47 e-value: 2.7E-9 score: 36.9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 1..46 score: 12.766504
IPR015660	Achaete-scute transcription factor-related	PANTHER	PTHR13935	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	coord: 2..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G009020.1	Lsi10G009020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000112	regulation of cellular macromolecule biosynthetic process
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0090575	RNA polymerase II transcription regulator complex
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity