Lsi10G008950 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi10G008950
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPhospho-N-acetylmuramoyl-pentapeptide-transferase, putative
Locationchr10: 13256273 .. 13262053 (-)
RNA-Seq ExpressionLsi10G008950
SyntenyLsi10G008950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATCGGGATTCATCGCCGCCTCCGTTGCCGCTGCATCCGCCGCCGCCATCTCCGCCTCCCCTTCTTCCTCTACTCTTATCTGCAACCCAAAAGTTCAATTCCCTCGCCAGGTAAGCCTTGAATCAACGATTCATCAATTTCCCTCTTCCAAAAATTCCTCCTTTAACAATTTCAAGTTTCAATTTATTGTTTGAAACTGTAAATTTCTTTGTCTTTTTCGCTATTTTTGAGATTTGGGAAATTTAATTATGCAGGAAGGAAAGGAAGGAGAGAACTCTTCGTCTTCAACGGATAAATTTGCTCCCAAATTTGATGGATTGAGATTTATTGAAACTCTTGTAACGGCTCACAGATAAAATTCGCCGGCGCCGGCGACGGCGACGGGCGTGGCTGCATTTGACGGTGGAGTGGACCCACCGCGGCCGCAACTTTGTATGTTGCTTTATTATTATTATTTTTTCTTTTTTGGTTTGTTATTTTTCTTGTCGAAAGAAATGATAGATAACAGAGAAAAGTGTCGAAAGTCTCTCATTCTGCACATTAAAAAAAATAAGAATTTTAGTTTATACTTTTTTTTTAAATTTTTTTTTTTTTATATTCATGAGCGTTCGGGCCAACTCTTAATACACTTAGACTAATTTTAAGATAATCTATTTGACTCTATAATACACTTAGACTAATTTTAAGATAATCTATTTGACTCTATAATATCTAGGTGTAAGAGAGAAATAGTAGGATATTTTTTAATTATTTTAATGAAAATTACCAAAAGATGCAATGAAGAAAACGTGTATTGGTTTGGTTTTGGGGTTGGGGAATAATTGTGTTCAAAAAACAACTTTTGCAGAAAGGAAAAAGAGAAAGAGTGACGTGTACATAATAATAATAATATAAAGAAAAAGAAGACTTTTGAATAGGCAAAAGGAAAGATTGTTTTTACAACTGGTTAAATTATAAAAGTACTGGTTTGAATTATACTTTTGAGTTTTAAAATGTTTTGTTTTAATTTTTGAAGTTTGAAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAGTGACACCTACCCTTTACATCGGTCTTTGAGGTCAGAGATTCAAATTATCATATCCGAATATGAATTTTAGTAGAGTTGGCATAAGAGGTGGATTTGATGTTGGTGCTGGTGGAGTTATAGGTTTAGGAAGCTTGTATTGTTTAAGTTTGTTTGGTTTCTCCAATGAAAAAGGAGTTAGACAACTCATCCCTTCAAATGTAAGTCCAACCCACCCCTCCAAACACCACATGTAGTAAATTATTGTATGATCAAATGACAAACTACAAGGCTAATGTTTTGATATTATCCTAAAAGTATAATGAAAAGATTTAAATCAAGCTGCGTGAGAAGCCGTATGTTAGCATAATTCTACCAATAAAAGCATTGAAAATTTTCACCTCAGGCGTTTCGAGGAACATCATTCTCGATTAGCAAAAACTGCTTGCATGTCTTACTTTACGGGTGATGGACCGCCCCATCCGAATACGTCGAGTGGTGAGAGCTTCTAACAGTACTTCCAGAGCATCTTCCAATGCTTCGCCCTGTTTTTCCAATTCGACCGAACTGAACTTTGGAACGAGTTGAAGCTCAAAGAGCAGGCTAGCTGCTGCTGCTGCAGTGCAGGTACGGTCCCATGATGGTTGAGGCCTTCACATTCAGACAAGCAGCTCTTAAGAGTCAATGTCCTATAAAAAGATCATGCGAGAAAACCCGAATATATTGGATGACTAGCTCAAATTCTTACCTGAGTTTATGCATTGCAGAGGATCCCGTAGCCAATGATATGCATGGAATGTCCTCTCCCCAAACCGATATAGCTTGCTCCTACATAATTGCATCATCAGAATATAGTTTTAGAGTAGTTTCCAAAAGTTTGGTCCACCTCAGTCTGAATATCAAACATCACACAAAGGAACATAAGCTATCAATGAAGGATCCCAAAAGAACATTATGAAGGTTCAAACCGAATAATGTTTATCTTTTATTGATTTCATGGCCTCCTAAAGGTCCCTGATACTCAGAACAAGGACCTACTGTCTATTTTTTTGATAAAAGAAAATTTCATCGATAAATGAAATATGGGGAAACCCCAAACACATATAGGTGATTACAATAGAGAGCGAACAAGGACCTATTGTCAGGATGTTACTACTACACCATTTCACTGAGAGCCAACAAAGCATATATGGTAGCAGTCCATCAAATAGTGGAAAGAAGCTGTTTGAGGCCCATTTCTGTTGGGTAGTGCCATCTAAAAGTAGGATGCTATACTTTAATTGCTTTCGTGGGCAAAATCTCAAGAAACCAGGATCCTACGGTGGTCCAACTTCATAAGGTCACTCTTCAGGAATCATGGAATAAAGGAAATTTGAGAATCTTTCTTAATATTGCTGACAGATGGGGGAGCTAGATGGCAGGCCTCCTTTTGGAGTACTCAAAATCCTGTTTTGGTTTCACATTTGCTTGGGGTGGATTTTCCTATCCCACTTGTTAAAAAAATGAAACAGTAAAAACTAAGACATAATCCCAAAAGTATTAATTCAAGAATAGCACCCAATTATGCAGGATTAAATATTCAGGCATATTGTTATGGGCAAAACTTTGGCTTTCTCCAGTAATAACCCAGAAGATGCCCACCTAGACGACATAATACGAAAATGCTACATAACGTTACCTTGAGTCGGTTGAACATTGCAGCAGAGTTGCTCCAAGTACCATCAATCAAAACAAAATTCAGAATTCCATCTCCATCAGTCTATGAGTAGAATCAACAAGAACGTTATGACCTTGTTCAACTGGAAGAACACAAAATTTTACAAAAACAGAACCATAGCAAAAAAAACAAAACATCAGCCAGAATACAAAGTACGTTATTTGGAACTGTATGGATTGAATAGCTGAGCCTAGAAGTCTTCCATAAATAATGTTTCATAGGTATATCCAACCATAAATGTCGTAGGTATGTTGAATTTCTTCTACCATGTAGTCTTTACTTTTATCATTACCATTTAATAATATGAAATATGAAGTCAAATTCTAGCTGCACAGTGAGTAGTATAATCAAGAACGGACATTAACTATACTGCTTCAGAAAATATGTACCATTTGCTGTGGGTTTTCTAGCTTAGTTGACAGTTCAGAGCTGAAGGCCTCCTGAACACCTTTGGAAATTGCATTCTTGTTGGGATAAAGGCAACAAACCTTACTTTTACCTGAGTAATATTTGAAAAAACCACAGTAAACAAAAGAAGAAAATAGAGTTTTACATGGCATACCGTCTTTGCTAATGAGTTACAGTGTGAAAACCACATGGCAGTTTATGGCTGATAGCAACTATCCACATATATTTTGTTAGTATCCAATCCAAACACAGAAAATATACAAAAAAACCAAAGAGAACTATATTGCAATTTCAGTGAAGAAATTACAATATAAACAAGTAATTCGAGATACTTGGACCCTCTCGTATTGAAATCTCTCTCAATTACCAAATGTCTAACACCCTCCTTCCCCACTTCCTTTATTTATAACTAAACTCCATAACCACCTCCCTAACTACTCACTCATATACCCTTAATATCCTAATAGCATTCCTAACATATTACTAGATTCAGAGGAATGCCATAAATCTCTTAAAGAAATACTTAATTTCTTAGACCTAGAATAAGATATTACATTAGTTCTTGCTACAGTAATATAAAGCTATAANAATATACAAAAAAACCAAAGAGAACTATATTGCAATTTCAGTGAAGAAATTACAATATAAACAAGTAATTCGAGATACTTGGACCCTCTCGTATTGAAATCTCTCTCAATTACCAAATGTCTAACACCTCCTTCCCCACTTCCTTTATTTATAACTAAACTCCATAACCACCTCCCTAACTACTCACTCATATACCCTTAATATCCTAATAGCATTCCTAACATATTACTAGATTCAGAGGAATGCCATAAATCTCTTAAAGAAATACTTAATTTCTTAGACCTAGAATAAGATATTACATTAGTTCTTGCTACAGTAATATAAAGCTATAGACTTGTTAAAGCTTACACGAGGAATACAGTTACCTGCTGACTTGAATGCATTCCACATGATTTCTTCATGTTCTGAGATACCATAGAGGCACAAAGTTGTGGATTCTACACCAAAGACTTGCAACAACAACTTCCCTGTGTTGTTCTGCCGCAGAAAATCCTGAACAAAAACTCTAGATAAACTTTATGTCAAGTTTAGTAGATGAGAAGGATCAAGAATTGACCAGCAGTAGACACACCTTTGGATGCATATATAGCCAAAACCGTGCTCCATGCCATAGAGAACAATGCTTGACTCTTGAACACATACAATCCTCAAAAGGCAGCCAGCACTAAGCAGACACAAAAGAATTCAAAAAAGGCAGATAAGTTACATAAAGTAATAATAAAGGTCTGTAGATACTAAACAGCCTATCAGTAATGCAATAGAAAAACCTATTCAACAAATTGGTGGTGTTAATATGAATAGAACTCCAAGAAATACATAATCATTTAAGATTGATTATACCTTCTGACAAAGATAATCTCGGCTCCCAAGCAGACGACATGCTATTTGTCGAGCAGAAAAGAATTGAAGTTTCTGCTCAGAACTACCTAGAGCCTGATAGGTAGCTCGGTGTTTTTTGTCCTCCTGAGTTTTAAAATATCCCTGAAAAAAGGCCAAAGATTAACAATGCAATTTTTTTCACAATGAATAGATTAAATACGTAGGATGGAGGAATTGAACTTGGCAATGCAATCTTTTTCACAATGAGTAAAAATAAGAAGGGACATATATAGCACTACAGCCTCATGGTTCGTGGAATGGATATCTAAAATTTATTCGTTTTCACATGTGTAATAACCAAAAAAGATACTGCAGGAATAGTTCTGCCATTTGAGAAGCAAGGAGAATTACCATGTAGTTTTGTGTTTATTACATGTGTAAGGATTCCGATTTGAGTCCAAAATGTAACTTTTTTTTTTTGTCTTTTTTGACAAGGAACGGAGAACTTCATTAAAAAACTGGAGCCAAACAAAACAACCTAGGGGACAAATGGACAACGCATCCCACTTTCCCAAGAAAAGGATTACAAAAAGACCTTCCAACCTATAATGATGGAGTATGTGGAGTAATTACAAAAAA

mRNA sequence

AAATCGGGATTCATCGCCGCCTCCGTTGCCGCTGCATCCGCCGCCGCCATCTCCGCCTCCCCTTCTTCCTCTACTCTTATCTGCAACCCAAAAGTTCAATTCCCTCGCCAGGTAAGCCTTGAATCAACGATTCATCAATTTCCCTCTTCCAAAAATTCCTCCTTTAACAATTTCAAGTTTCAATTTATTGAAGGAAAGGAAGGAGAGAACTCTTCGTCTTCAACGGATAAATTTGCTCCCAAATTTGATGGATTGAGATTTATTGAAACTCTTGTAACGGCTCACAGATAAAATTCGCCGGCGCCGGCGACGGCGACGGGCGTGGCTGCATTTGACGGTGGAGTGGACCCACCGCGGCCGCAACTTTGAACGGAGAACTTCATTAAAAAACTGGAGCCAAACAAAACAACCTAGGGGACAAATGGACAACGCATCCCACTTTCCCAAGAAAAGGATTACAAAAAGACCTTCCAACCTATAATGATGGAGTATGTGGAGTAATTACAAAAAA

Coding sequence (CDS)

AAATCGGGATTCATCGCCGCCTCCGTTGCCGCTGCATCCGCCGCCGCCATCTCCGCCTCCCCTTCTTCCTCTACTCTTATCTGCAACCCAAAAGTTCAATTCCCTCGCCAGGTAAGCCTTGAATCAACGATTCATCAATTTCCCTCTTCCAAAAATTCCTCCTTTAACAATTTCAAGTTTCAATTTATTGAAGGAAAGGAAGGAGAGAACTCTTCGTCTTCAACGGATAAATTTGCTCCCAAATTTGATGGATTGAGATTTATTGAAACTCTTGTAACGGCTCACAGATAA

Protein sequence

KSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQVSLESTIHQFPSSKNSSFNNFKFQFIEGKEGENSSSSTDKFAPKFDGLRFIETLVTAHR
Homology
[Close]
BLAST of Lsi10G008950 vs. ExPASy TrEMBL
Match: A0A6J1CHM8 (uncharacterized protein LOC111011258 OS=Momordica charantia OX=3673 GN=LOC111011258 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.3e-16
Identity = 61/96 (63.54%), Postives = 63/96 (65.62%), Query Frame = 0 

Query: 1  KSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQVSLESTIHQFPSSKNSSFNNFKF 60
          KS FIAASVA AS AA+SASPSSST +CNPKVQFPRQ                       
Sbjct: 3  KSAFIAASVAGAS-AAVSASPSSSTFVCNPKVQFPRQ----------------------- 62

Query: 61 QFIEGKEGENSSSSTDKFAPKFDGLRFIETLVTAHR 97
             EGK  ENSSSS DKFAPKFDGLRFIETLVTAHR
Sbjct: 63 ---EGKVEENSSSSADKFAPKFDGLRFIETLVTAHR 71

[Close]
BLAST of Lsi10G008950 vs. ExPASy TrEMBL
Match: A0A6J1I1D6 (uncharacterized protein LOC111469626 OS=Cucurbita maxima OX=3661 GN=LOC111469626 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 8.3e-16
Identity = 61/97 (62.89%), Postives = 65/97 (67.01%), Query Frame = 0 

Query: 1  KSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQVSLESTIHQFPSSKNSSFNNFKF 60
          KSGFIAAS+AAAS AA+SASPSSSTL C+PK+Q PRQ                       
Sbjct: 3  KSGFIAASIAAAS-AAVSASPSSSTLFCDPKIQLPRQ----------------------- 62

Query: 61 QFIEGKE-GENSSSSTDKFAPKFDGLRFIETLVTAHR 97
             E KE GENSSSS DKFAPKFDGLRFIETLVTAHR
Sbjct: 63 ---EEKELGENSSSSADKFAPKFDGLRFIETLVTAHR 72

[Close]
BLAST of Lsi10G008950 vs. ExPASy TrEMBL
Match: E0CTD2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.4e-10
Identity = 53/100 (53.00%), Postives = 60/100 (60.00%), Query Frame = 0 

Query: 1  KSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQVSLESTIHQFPSSKNSSFNNFKF 60
          KSGF AASVAAASA AISA PSSS  +CN K+Q  R                        
Sbjct: 3  KSGFFAASVAAASATAISA-PSSSGFLCNSKIQLSRD----------------------- 62

Query: 61 QFIEGKEGENS----SSSTDKFAPKFDGLRFIETLVTAHR 97
          + + GK+ ENS    SSS D+FAP+FDGLRFIETLVTAHR
Sbjct: 63 EAVAGKDIENSESQRSSSADRFAPRFDGLRFIETLVTAHR 78

[Close]
BLAST of Lsi10G008950 vs. ExPASy TrEMBL
Match: A0A059DGL2 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A01816 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.0e-09
Identity = 49/96 (51.04%), Postives = 55/96 (57.29%), Query Frame = 0 

Query: 1   KSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQVSLESTIHQFPSSKNSSFNNFKF 60
           KSG  A S AAASA AI++S SS    C  K+QFP Q  + ST  Q  SS+N        
Sbjct: 53  KSGLFAVSAAAASATAIASSSSSLNFSCTSKLQFPNQEHVSST-EQAASSQN-------- 112

Query: 61  QFIEGKEGENSSSSTDKFAPKFDGLRFIETLVTAHR 97
                      S S DKFAP+FDGLRFIETLVTAHR
Sbjct: 113 -----------SGSADKFAPRFDGLRFIETLVTAHR 128

[Close]
BLAST of Lsi10G008950 vs. ExPASy TrEMBL
Match: A0A2C9US41 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G147000 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.7e-09
Identity = 49/96 (51.04%), Postives = 58/96 (60.42%), Query Frame = 0 

Query: 1   KSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQVSLESTIHQFPSSKNSSFNNFKF 60
           KSGF AASVAAASA AISASPSSST             S  S +H  P   +S+      
Sbjct: 46  KSGFFAASVAAASATAISASPSSST----------SSFSCNSNMHLSPEEASSN------ 105

Query: 61  QFIEGKEGENSSSSTDKFAPKFDGLRFIETLVTAHR 97
                 + +  ++ST+KFAP+FDGLRFIETLVTAHR
Sbjct: 106 ------KDQQRTASTNKFAPRFDGLRFIETLVTAHR 119

[Close]
BLAST of Lsi10G008950 vs. NCBI nr
Match: XP_038902353.1 (uncharacterized protein LOC120088987 [Benincasa hispida])

HSP 1 Score: 105.5 bits (262), Expect = 2.5e-19
Identity = 65/96 (67.71%), Postives = 67/96 (69.79%), Query Frame = 0 

Query: 1  KSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQVSLESTIHQFPSSKNSSFNNFKF 60
          KSGFIAASVA   AAA+SASPSSSTL+CNPKVQFPRQ                       
Sbjct: 3  KSGFIAASVA---AAAVSASPSSSTLVCNPKVQFPRQ----------------------- 62

Query: 61 QFIEGKEGENSSSSTDKFAPKFDGLRFIETLVTAHR 97
             EGKEGENSSSSTDKFAPKFDGLRFIETLVTAHR
Sbjct: 63 ---EGKEGENSSSSTDKFAPKFDGLRFIETLVTAHR 69

[Close]
BLAST of Lsi10G008950 vs. NCBI nr
Match: XP_004139940.2 (cell wall integrity and stress response component 1 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 6.3e-18
Identity = 63/96 (65.62%), Postives = 67/96 (69.79%), Query Frame = 0 

Query: 1  KSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQVSLESTIHQFPSSKNSSFNNFKF 60
          KSGFIAASVAAASA+A  ASPSSSTL+CNPKV FPRQ   E       SS +SS      
Sbjct: 3  KSGFIAASVAAASASAAVASPSSSTLVCNPKVLFPRQEGKEGENSSSSSSSSSS------ 62

Query: 61 QFIEGKEGENSSSSTDKFAPKFDGLRFIETLVTAHR 97
                   +SSSSTDKFAPKFDGLRFIETLVTAHR
Sbjct: 63 ------SSSSSSSSTDKFAPKFDGLRFIETLVTAHR 86

[Close]
BLAST of Lsi10G008950 vs. NCBI nr
Match: XP_022140652.1 (uncharacterized protein LOC111011258 [Momordica charantia])

HSP 1 Score: 95.5 bits (236), Expect = 2.6e-16
Identity = 61/96 (63.54%), Postives = 63/96 (65.62%), Query Frame = 0 

Query: 1  KSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQVSLESTIHQFPSSKNSSFNNFKF 60
          KS FIAASVA AS AA+SASPSSST +CNPKVQFPRQ                       
Sbjct: 3  KSAFIAASVAGAS-AAVSASPSSSTFVCNPKVQFPRQ----------------------- 62

Query: 61 QFIEGKEGENSSSSTDKFAPKFDGLRFIETLVTAHR 97
             EGK  ENSSSS DKFAPKFDGLRFIETLVTAHR
Sbjct: 63 ---EGKVEENSSSSADKFAPKFDGLRFIETLVTAHR 71

[Close]
BLAST of Lsi10G008950 vs. NCBI nr
Match: KAG6604795.1 (hypothetical protein SDJN03_02112, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.0 bits (232), Expect = 7.7e-16
Identity = 62/97 (63.92%), Postives = 65/97 (67.01%), Query Frame = 0 

Query: 1  KSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQVSLESTIHQFPSSKNSSFNNFKF 60
          KSGFIAASV AA AAA+SASPSSSTL C+PK+QFPRQ                       
Sbjct: 3  KSGFIAASVTAA-AAAVSASPSSSTLFCDPKIQFPRQ----------------------- 62

Query: 61 QFIEGKE-GENSSSSTDKFAPKFDGLRFIETLVTAHR 97
             E KE GENSSSS DKFAPKFDGLRFIETLVTAHR
Sbjct: 63 ---EEKELGENSSSSADKFAPKFDGLRFIETLVTAHR 72

[Close]
BLAST of Lsi10G008950 vs. NCBI nr
Match: XP_022970726.1 (uncharacterized protein LOC111469626 [Cucurbita maxima])

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-15
Identity = 61/97 (62.89%), Postives = 65/97 (67.01%), Query Frame = 0 

Query: 1  KSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQVSLESTIHQFPSSKNSSFNNFKF 60
          KSGFIAAS+AAAS AA+SASPSSSTL C+PK+Q PRQ                       
Sbjct: 3  KSGFIAASIAAAS-AAVSASPSSSTLFCDPKIQLPRQ----------------------- 62

Query: 61 QFIEGKE-GENSSSSTDKFAPKFDGLRFIETLVTAHR 97
             E KE GENSSSS DKFAPKFDGLRFIETLVTAHR
Sbjct: 63 ---EEKELGENSSSSADKFAPKFDGLRFIETLVTAHR 72

[Close]
BLAST of Lsi10G008950 vs. TAIR 10
Match: AT4G28290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 3.1e-07
Identity = 41/98 (41.84%), Postives = 53/98 (54.08%), Query Frame = 0 

Query: 1  KSGFIAASVA-AASAAAISA-SPSSSTLICNPKVQFPRQVSLESTIHQFPSSKNSSFNNF 60
          K+G IAAS++ AASA AISA S ++S    +P+    RQ + E                 
Sbjct: 3  KTGIIAASISVAASATAISAGSTNTSVSFSSPESNLSRQEAKEKQ--------------- 62

Query: 61 KFQFIEGKEGENSSSSTDKFAPKFDGLRFIETLVTAHR 97
                 K+G +     +KFAP+FDGLRFIETLVTAHR
Sbjct: 63 -----RKKKGSSEDGGDEKFAPRFDGLRFIETLVTAHR 80

[Close]
BLAST of Lsi10G008950 vs. TAIR 10
Match: AT5G42110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.1e-04
Identity = 18/25 (72.00%), Postives = 22/25 (88.00%), Query Frame = 0 

Query: 72 SSSTDKFAPKFDGLRFIETLVTAHR 97
          ++ +D F P+FDGLRFIETLVTAHR
Sbjct: 38 TNGSDNFEPRFDGLRFIETLVTAHR 62

The following BLAST results are available for this feature:
BLAST of Lsi10G008950 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi10G008950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CHM81.3e-1663.54uncharacterized protein LOC111011258 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A6J1I1D68.3e-1662.89uncharacterized protein LOC111469626 OS=Cucurbita maxima OX=3661 GN=LOC111469626... [more]
E0CTD21.4e-1053.00Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=... [more]
A0A059DGL22.0e-0951.04Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A01816 PE=4 SV... [more]
A0A2C9US415.7e-0951.04Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G147000 PE=4 SV=... [more]
BLAST of Lsi10G008950 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038902353.12.5e-1967.71uncharacterized protein LOC120088987 [Benincasa hispida][more]
XP_004139940.26.3e-1865.63cell wall integrity and stress response component 1 [Cucumis sativus][more]
XP_022140652.12.6e-1663.54uncharacterized protein LOC111011258 [Momordica charantia][more]
KAG6604795.17.7e-1663.92hypothetical protein SDJN03_02112, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022970726.11.7e-1562.89uncharacterized protein LOC111469626 [Cucurbita maxima][more]
BLAST of Lsi10G008950 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G28290.13.1e-0741.84unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G42110.11.1e-0472.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34683EXPRESSED PROTEIN-RELATEDcoord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G008950.1Lsi10G008950.1mRNA