Lsi10G008910 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G008910
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	tetraspanin-19
Location	chr10: 13184378 .. 13187579 (-)
RNA-Seq Expression	Lsi10G008910
Synteny	Lsi10G008910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTCTACAAGAAACTTGGGTTCCAAGTTGATAGCTTGATTGAAGGATACTACTCTGCGGATCGAGATGCCTACAGAATGTACTTGGAATTTTGAGACAGCATAGTCTTACAACTAGACTAGACATTTTAAAAGCTAAATTTTATATATCTTGATGTTATATTTATATCAGAGAACTCATGATCACTTCTATTGTAATTTTATAATGCATTTCGGGAAGTAATTAATGATGATGTTGAGTTTATGGATCATATGCAGGTAGAACAATTGATTGCATTAAGAAAAAATAAGAAGGAATCAAATGAAGACAATACTAAAAGCTTAATGGATTAGCCAGGTAGTTGTTTCCTAATTCTCTTTTAAATTATTAGAATTAAGAATATTGTGACGTCTCAAAGTTATCAATTAACTTTATATAATGTAAACATCTTACATGTACCATAATGTCGCGTCTCATAATAATAATTAGAAGTAGATATAACGAAAGACTATTGATCACATTGCGATGGTGGTCTCAATGAATAATCTTTCTCTCTCTTATTTGTAAAAATTCCACATAGATTTTCCTCTTTTAAAAAAGGGAAAAAAAATCTCTATATTCGGTTATCAAATCTAATGAGGAGAAAGAAGAAGCCATCATCATGTGTAATTAACGGTACGAACGTACAAGGATGAAAATGGGAAAACTGTTCCTTCGAAATAGGAAAGAATTCTCTGAATCATTTGAAAAATTGAAATATCTACTAAATCCTATGATGCAAAGTTCTTTGAAGCCCGAAAAGACGCAAAATTCTTGGCGCGCAGGGTGTATCTATGGCGGTTGAATATTGCGTTCATTAGGCTTCTCTTGGCTATCTGTTTCCTCATTTTCAAACTTGAGTTGTTTGCATATTCGTCTGATCAATTGGGTAATTGACAACAAATGGTAAGAATTTTAAGGGTCTGCATGCAATCTTTGTTGAAGTTCGTGAATTCTGGAAATGGGATAGTTGGAATCGCCATGATTCTGTACGGAATTTGGTTGATGAGGGCTTGGCAGAGGCATTTGGGCCATTTGCCCTATGAAGGACCCAATGACCCAATTCCATGGTATTGCTTTTTGACTTTCTTGTAGACTATATAATTTGGGATTTTCTTCCATTTTCTGGGTCGTCTCTTTTTGTTTCTTAACATTATTTTGGAGGGATGAGGCTGGGAAGAGCATTATGAAATCAGAGTTTGGGGTTAGGACTTAGAGGGGGACGCTTCAAGTTTCTTGGGGAAATTCGAAAGTCCGAAATTACTCTCTTATTTGATTGTCCTTAGTAATTTCGCTTTAAATGGGTCTGTTTGGGTTGAGAATACATTCCTCATATCATAGTTACTGATCTCTTTACGGAGAATAATCTCAAATAATGTAATGAAGTAGAGCATGTTTGTGCATTCCATATATCTCCTAAGAAAAAGGAAGAAGGAAATACATGACCTGCAAATGTAGAGAGGGTACAAGATCAGGTGTCTTCGTGTTCTTTATTCTTTCTGAATTATGGTCTTGGTAGAATAGTTTCCAAACCCCCATCGATATATGAATTTGAACAAACTTGTAAGGAGTATTGTAGCAGTTAATATGGTTGAGATTTGGGTTCTTTGGCAGTTGGTTGATAGGAAGACAAAAGGGAAGCCACCAGGACAGGGATGTAGCTCACATATTGGTCTTGCTTAAATTTCAGGTTCATGTACAGTTTTCTTGGCCTAGGAATTCTTTTATGTGTGATCACATGCTTGGGTCATATTGCTGCTGAAACTGCTAATGGTTGTTGCCTTCATCTGGTACCGTATTCTTAATTGACTATATCTATACGATATGAGTCTCTCCTACCCTCTCGATAGATTACTTGACATATGAGAGTCTGATTATCCTTCAATGTATGCAGTATATGGTGCTTGTCTTTATGGTTCTCATGGTGGAGGCGGGGGTGACAACAGATGTATTTTTGAATCATGACTGGGAGGAGGTGAAGATTTTACATACACAAGGCTTATGCATCAGCTTAAAAGTTAAAATAATGATAACCACAAAGATGCCACCAGATATTCATAATTCTAACTGATGACTTTTAACTTTACTCCAGGATTTTCCAAAAGATCCAAGTGGAAGTTTTGATCAGTTCAAACATTTCATTAAATTGAACTTCAATATCTGCAAATGGATAGGGATCTCAATGGTGTCTATTCAGGTCTCTCTCTCTCTCTTTTCTCATGTTGGTCTGTCTTGAGGTAGGGATTCTGTTAGGTAACTAAATAAGTTTATTAGTTTGATATTAATAAGGGGTTAAGGGTAATTAAATAGGAAGTTAGTTACTAAATATTGCTATAAATGGAAGGAGTGGGGGTGGTAGGAAGGGGTGAAGAATTTTGGTAGTGATTTCCTAATTGTTGAATAGTGGGAGAGAGTAGCCCTCTCGAAAGGCTATGGTATATTGTAGTTTCTTTATTGATATTGCAATATAATTCTATCTTTTATTGTTCTTTGTTTGTTCTTTGGTATTCTTGAATTCTTTTGTTAGGAGGTATCCTAACAGATTCCTTCTGACAAACTTGCCATGTTGATGGACTTGTCTCAGGGTTTGTCTCTCTTGTTGGCAATGGTACTAAAAGCAATTGGATCACGTCGATATTACGATAGCGATGATGAGTATGCTTCTGAGAGGCTTCCGCTTCTTAAGAATGCTCTTCATTCACCAACTACATGTGTTATTGGGGACCCTGTCTTTCCATCTAAAAATGATACATGGAACAAACGAACTAACGATAAGGTATTAATACACAATCATGTTCTCAACTGTTAGGCATGTCATATATATGGATGCTCTGTGTCACCATATTATTGTCACTTAGTTACCATAAAATTGTTGCCCTTTTGTGGCTTTTAAGCTACAATCAACCAGGCATATCAAATTCTTTCCATCTCTTTGCACTTACCCTTTTCAGTTCTCAATTTCTTCTTTGGTGTCTTGTCATTGGAACAACTTTTACTGTTGATTTCCCATTGAAGTTGTTTCCATTTTGTCTAAGCTCATAAGAACTGTTCATTCATCCATCTTGAGTTTATTGTTAGATGAAATGATAGCTAACTGGTACATTCAAGATATTGATTTCCACCATTTTCTGATTTCAGCCCAAGTTGTTGAGCATATTAATTACCCTGTTTATGCCATAA

mRNA sequence

ATGAATCTCTACAAGAAACTTGGGTTCCAAGTTGATAGCTTGATTGAAGGATACTACTCTGCGGATCGAGATGCCTACAGAATGGTCTGCATGCAATCTTTGTTGAAGTTCGTGAATTCTGGAAATGGGATAGTTGGAATCGCCATGATTCTGTACGGAATTTGGTTGATGAGGGCTTGGCAGAGGCATTTGGGCCATTTGCCCTATGAAGGACCCAATGACCCAATTCCATGGTTCATGTACAGTTTTCTTGGCCTAGGAATTCTTTTATGTGTGATCACATGCTTGGGTCATATTGCTGCTGAAACTGCTAATGGTTGTTGCCTTCATCTGTATATGGTGCTTGTCTTTATGGTTCTCATGGTGGAGGCGGGGGTGACAACAGATGTATTTTTGAATCATGACTGGGAGGAGGATTTTCCAAAAGATCCAAGTGGAAGTTTTGATCAGTTCAAACATTTCATTAAATTGAACTTCAATATCTGCAAATGGATAGGGATCTCAATGGTGTCTATTCAGCCCAAGTTGTTGAGCATATTAATTACCCTGTTTATGCCATAA

Coding sequence (CDS)

ATGAATCTCTACAAGAAACTTGGGTTCCAAGTTGATAGCTTGATTGAAGGATACTACTCTGCGGATCGAGATGCCTACAGAATGGTCTGCATGCAATCTTTGTTGAAGTTCGTGAATTCTGGAAATGGGATAGTTGGAATCGCCATGATTCTGTACGGAATTTGGTTGATGAGGGCTTGGCAGAGGCATTTGGGCCATTTGCCCTATGAAGGACCCAATGACCCAATTCCATGGTTCATGTACAGTTTTCTTGGCCTAGGAATTCTTTTATGTGTGATCACATGCTTGGGTCATATTGCTGCTGAAACTGCTAATGGTTGTTGCCTTCATCTGTATATGGTGCTTGTCTTTATGGTTCTCATGGTGGAGGCGGGGGTGACAACAGATGTATTTTTGAATCATGACTGGGAGGAGGATTTTCCAAAAGATCCAAGTGGAAGTTTTGATCAGTTCAAACATTTCATTAAATTGAACTTCAATATCTGCAAATGGATAGGGATCTCAATGGTGTCTATTCAGCCCAAGTTGTTGAGCATATTAATTACCCTGTTTATGCCATAA

Protein sequence

MNLYKKLGFQVDSLIEGYYSADRDAYRMVCMQSLLKFVNSGNGIVGIAMILYGIWLMRAWQRHLGHLPYEGPNDPIPWFMYSFLGLGILLCVITCLGHIAAETANGCCLHLYMVLVFMVLMVEAGVTTDVFLNHDWEEDFPKDPSGSFDQFKHFIKLNFNICKWIGISMVSIQPKLLSILITLFMP

Homology

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BLAST of Lsi10G008910 vs. ExPASy Swiss-Prot
Match: Q940P5 (Tetraspanin-19 OS=Arabidopsis thaliana OX=3702 GN=TOM2AH3 PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.2e-54
Identity = 94/156 (60.26%), Postives = 123/156 (78.85%), Query Frame = 0


Query: 30  CMQSLLKFVNSGNGIVGIAMILYGIWLMRAWQRHLGHLPYEGPNDPIPWFMYSFLGLGIL 89
           C+QS+LK VNS  G+VGIAMILY +WL+R WQ  +G+LP+   + P+PWF+YSFLGLG +
Sbjct: 8   CLQSMLKLVNSLIGMVGIAMILYAVWLIRQWQEQMGNLPFADSDHPVPWFIYSFLGLGAI 67

Query: 90  LCVITCLGHIAAETANGCCLHLYMVLVFMVLMVEAGVTTDVFLNHDWEEDFPKDPSGSFD 149
           LCV+TC GHIAAET NGCCL+LYM  + ++ MVE GV  D+FLN DW++DFP+DPSG+F 
Sbjct: 68  LCVVTCAGHIAAETVNGCCLYLYMGFIVLLTMVEGGVVADIFLNRDWKKDFPEDPSGAFH 127

Query: 150 QFKHFIKLNFNICKWIGISMVSIQPKLLSILITLFM 186
           QF  FI+ NF ICKWIG+S+V +Q   LS+LI + +
Sbjct: 128 QFSKFIESNFKICKWIGLSIVCVQG--LSVLIAMLL 161

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BLAST of Lsi10G008910 vs. ExPASy Swiss-Prot
Match: Q93XY5 (Tetraspanin-18 OS=Arabidopsis thaliana OX=3702 GN=TOM2AH2 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.0e-27
Identity = 64/199 (32.16%), Postives = 105/199 (52.76%), Query Frame = 0


Query: 29  VCMQSLLKFVNSGNGIVGIAMILYGIWLMRAWQRHLG-------------------HLPY 88
           V   S LK +N     +G+++I+Y IW++  + RHL                      P 
Sbjct: 8   VSFASTLKILNFVQAFIGVSIIIYSIWMLHEYSRHLPVDPPPSASSSSGTEIATSVSEPL 67

Query: 89  EGPND-----------------------PIPWFMYSFLGLGILLCVITCLGHIAAETANG 148
           + P D                       P PWF+YSF+ +GIL+C++T +G IAAE  NG
Sbjct: 68  KNPIDFVASIILGSNGGDHGFNLRSLDLPAPWFIYSFMAVGILVCIVTFIGFIAAEAING 127

Query: 149 CCLHLYMVLVFMVLMVEAGVTTDVFLNHDWEEDFPKDPSGSFDQFKHFIKLNFNICKWIG 186
           CCL  Y +L  +++++EA +   + ++  WE+D P DP+G     + FI+ N +ICKW+G
Sbjct: 128 CCLCFYSILKTLLILLEAALVAYIAIDRHWEKDLPYDPTGELSSLRAFIEENIDICKWVG 187

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BLAST of Lsi10G008910 vs. ExPASy Swiss-Prot
Match: Q9SVU4 (Tetraspanin-20 OS=Arabidopsis thaliana OX=3702 GN=TOM2AH1 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.8e-25
Identity = 64/210 (30.48%), Postives = 104/210 (49.52%), Query Frame = 0


Query: 29  VCMQSLLKFVNSGNGIVGIAMILYGIWLMRAWQRHL------------------------ 88
           V   S+LK +N     +GI++I+Y IW++  +  H+                        
Sbjct: 8   VSFASILKILNFLQAFIGISIIIYSIWMLDQYNHHVPVDPPPSQPPAASSPDSSYSFSNS 67

Query: 89  -------------------GHLPYEGPND----------PIPWFMYSFLGLGILLCVITC 148
                              G +   G  D          P PWF+Y F+ +GIL+C++T 
Sbjct: 68  IIEINSVSDSLKNPIDFVSGIVLGSGGGDSGFNLRSLDLPAPWFIYCFMAIGILVCIVTI 127

Query: 149 LGHIAAETANGCCLHLYMVLVFMVLMVEAGVTTDVFLNHDWEEDFPKDPSGSFDQFKHFI 186
           +G IAAE  NGCCL  Y +L  +++++EA +   + ++  WE+D P DP+G  +  + FI
Sbjct: 128 IGFIAAEAINGCCLCFYSILKTLLIIIEAALVGFIVIDRHWEKDLPYDPTGELNSLRAFI 187

[Close]

BLAST of Lsi10G008910 vs. ExPASy Swiss-Prot
Match: Q9C5W7 (Tobamovirus multiplication protein 2A OS=Arabidopsis thaliana OX=3702 GN=TOM2A PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-18
Identity = 48/178 (26.97%), Postives = 90/178 (50.56%), Query Frame = 0


Query: 30  CMQSLLKFVNSGNGIVGIAMILYGIWLMRAWQR-------------HLGHLPYEGP---- 89
           C++ LLK +N    + G+ MI YGI+L   ++R                ++ +  P    
Sbjct: 6   CLECLLKLLNFLLAVAGLGMIGYGIYLFVEYKRVTDNSVTFDLTNGDQSYVSFGRPILMA 65

Query: 90  ---------NDPIPWFMYSFLGLGILLCVITCLGHIAAETANGCCLHLYMVLVFMVLMVE 149
                    N P  WF+Y F+G+G+ L VI+C G +   + + CCL  Y +L+ ++++VE
Sbjct: 66  VSLSSNIFDNLPKAWFIYLFIGIGVALFVISCCGCVGTCSRSVCCLSCYSLLLILLILVE 125

Query: 150 AGVTTDVFLNHDWEEDFPKDPSGSFDQFKHFIKLNFNICKWIGISMVSIQPKLLSILI 182
            G    +F ++ W ++ P D +G+FD   +F++ N+ I +W+ +  V  +  L  + +
Sbjct: 126 LGFAAFIFFDNSWRDELPSDRTGNFDTIYNFLRENWKIVRWVALGAVVFEALLFLLAL 183

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BLAST of Lsi10G008910 vs. ExPASy TrEMBL
Match: A0A5D3C188 (Tetraspanin-19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001560 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.1e-75
Identity = 137/156 (87.82%), Postives = 146/156 (93.59%), Query Frame = 0


Query: 30  CMQSLLKFVNSGNGIVGIAMILYGIWLMRAWQRHLGHLPYEGPNDPIPWFMYSFLGLGIL 89
           CMQSLLKFVNSGNG+VGIAMILYGIWLMRAWQRHLGHLPYEGP+DPIPWFMYSFLGLGIL
Sbjct: 8   CMQSLLKFVNSGNGMVGIAMILYGIWLMRAWQRHLGHLPYEGPSDPIPWFMYSFLGLGIL 67

Query: 90  LCVITCLGHIAAETANGCCLHLYMVLVFMVLMVEAGVTTDVFLNHDWEEDFPKDPSGSFD 149
           LCVITCLGHIAAETANGCCLHLYM+L+FMV+MVEAGVTTDVFLN DW EDFPKDPSG FD
Sbjct: 68  LCVITCLGHIAAETANGCCLHLYMLLLFMVIMVEAGVTTDVFLNRDWAEDFPKDPSGCFD 127

Query: 150 QFKHFIKLNFNICKWIGISMVSIQPKLLSILITLFM 186
           QFKHFIK NFNICKWIGIS VSIQ   LS+L+ + +
Sbjct: 128 QFKHFIKSNFNICKWIGISTVSIQG--LSLLLAMVL 161

[Close]

BLAST of Lsi10G008910 vs. ExPASy TrEMBL
Match: A0A1S3BK78 (tetraspanin-19 OS=Cucumis melo OX=3656 GN=LOC103490521 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.1e-75
Identity = 137/156 (87.82%), Postives = 146/156 (93.59%), Query Frame = 0


Query: 30  CMQSLLKFVNSGNGIVGIAMILYGIWLMRAWQRHLGHLPYEGPNDPIPWFMYSFLGLGIL 89
           CMQSLLKFVNSGNG+VGIAMILYGIWLMRAWQRHLGHLPYEGP+DPIPWFMYSFLGLGIL
Sbjct: 8   CMQSLLKFVNSGNGMVGIAMILYGIWLMRAWQRHLGHLPYEGPSDPIPWFMYSFLGLGIL 67

Query: 90  LCVITCLGHIAAETANGCCLHLYMVLVFMVLMVEAGVTTDVFLNHDWEEDFPKDPSGSFD 149
           LCVITCLGHIAAETANGCCLHLYM+L+FMV+MVEAGVTTDVFLN DW EDFPKDPSG FD
Sbjct: 68  LCVITCLGHIAAETANGCCLHLYMLLLFMVIMVEAGVTTDVFLNRDWAEDFPKDPSGCFD 127

Query: 150 QFKHFIKLNFNICKWIGISMVSIQPKLLSILITLFM 186
           QFKHFIK NFNICKWIGIS VSIQ   LS+L+ + +
Sbjct: 128 QFKHFIKSNFNICKWIGISTVSIQG--LSLLLAMVL 161

[Close]

BLAST of Lsi10G008910 vs. ExPASy TrEMBL
Match: A0A0A0KEA2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G128570 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.4e-74
Identity = 135/156 (86.54%), Postives = 145/156 (92.95%), Query Frame = 0


Query: 30  CMQSLLKFVNSGNGIVGIAMILYGIWLMRAWQRHLGHLPYEGPNDPIPWFMYSFLGLGIL 89
           C++SLLKFVNSGNG+VGIAMILYGIWLMRAWQRHLGHLPYEGPNDPIPWF YSFLGLGIL
Sbjct: 8   CIRSLLKFVNSGNGMVGIAMILYGIWLMRAWQRHLGHLPYEGPNDPIPWFTYSFLGLGIL 67

Query: 90  LCVITCLGHIAAETANGCCLHLYMVLVFMVLMVEAGVTTDVFLNHDWEEDFPKDPSGSFD 149
           LCVITCLGHIAAETANGCCLHLYM+L+FMV+MVEAGVTTDVFLN DW EDFPKDPSG FD
Sbjct: 68  LCVITCLGHIAAETANGCCLHLYMLLLFMVIMVEAGVTTDVFLNRDWAEDFPKDPSGCFD 127

Query: 150 QFKHFIKLNFNICKWIGISMVSIQPKLLSILITLFM 186
           QFKHFIK NFNICKWIGIS VSIQ   LS+L+ + +
Sbjct: 128 QFKHFIKSNFNICKWIGISTVSIQG--LSLLLAMVL 161

[Close]

BLAST of Lsi10G008910 vs. ExPASy TrEMBL
Match: A0A6J1HZX7 (tetraspanin-19 OS=Cucurbita maxima OX=3661 GN=LOC111469621 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 5.1e-70
Identity = 127/156 (81.41%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 30  CMQSLLKFVNSGNGIVGIAMILYGIWLMRAWQRHLGHLPYEGPNDPIPWFMYSFLGLGIL 89
           CMQSLLKFVNSGNG+VGIAMILYGIWLMRAWQRHLGH P+E P+DPIPWFMYSF GLGIL
Sbjct: 8   CMQSLLKFVNSGNGLVGIAMILYGIWLMRAWQRHLGHFPFERPDDPIPWFMYSFFGLGIL 67

Query: 90  LCVITCLGHIAAETANGCCLHLYMVLVFMVLMVEAGVTTDVFLNHDWEEDFPKDPSGSFD 149
           LCVITC+GHIAAETA GCCLHLY++LVF+VLMVEAG+ TDVFLN DWEEDFP DPSGSFD
Sbjct: 68  LCVITCVGHIAAETARGCCLHLYVMLVFVVLMVEAGLATDVFLNRDWEEDFPVDPSGSFD 127

Query: 150 QFKHFIKLNFNICKWIGISMVSIQPKLLSILITLFM 186
           QFK FI+LNF+IC+WIGISM+SIQ   LS+L+ + +
Sbjct: 128 QFKQFIRLNFDICQWIGISMMSIQG--LSLLLAMLL 161

[Close]

BLAST of Lsi10G008910 vs. ExPASy TrEMBL
Match: A0A6J1G704 (tetraspanin-19 OS=Cucurbita moschata OX=3662 GN=LOC111451441 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.1e-69
Identity = 126/156 (80.77%), Postives = 143/156 (91.67%), Query Frame = 0


Query: 30  CMQSLLKFVNSGNGIVGIAMILYGIWLMRAWQRHLGHLPYEGPNDPIPWFMYSFLGLGIL 89
           C+QSLLKFVNSGNG+VGIAMILYGIWLMRAWQRHLGH P+E P+DPIPWFMYSF GLGIL
Sbjct: 8   CIQSLLKFVNSGNGLVGIAMILYGIWLMRAWQRHLGHFPFERPDDPIPWFMYSFFGLGIL 67

Query: 90  LCVITCLGHIAAETANGCCLHLYMVLVFMVLMVEAGVTTDVFLNHDWEEDFPKDPSGSFD 149
           LCVITC+GHIAAETA GCCLHLY++LVF+VLMVEAG+ TDVFLN DWEEDFP DPSGSFD
Sbjct: 68  LCVITCVGHIAAETARGCCLHLYVMLVFVVLMVEAGLATDVFLNRDWEEDFPMDPSGSFD 127

Query: 150 QFKHFIKLNFNICKWIGISMVSIQPKLLSILITLFM 186
           QFK FI+LNF+IC+WIGISM+SIQ   LS+L+ + +
Sbjct: 128 QFKQFIRLNFDICQWIGISMMSIQG--LSLLLAMLL 161

[Close]

BLAST of Lsi10G008910 vs. NCBI nr
Match: KAE8646859.1 (hypothetical protein Csa_020892 [Cucumis sativus])

HSP 1 Score: 331.3 bits (848), Expect = 5.5e-87
Identity = 161/203 (79.31%), Postives = 174/203 (85.71%), Query Frame = 0


Query: 1   MNLYKKLGFQVDSLIEGYYSADRDAYRMV------------------CMQSLLKFVNSGN 60
           MNLYKKLGFQVDSLI+GYYSADRDAYR++                  C++SLLKFVNSGN
Sbjct: 138 MNLYKKLGFQVDSLIKGYYSADRDAYRILQLFAYLSVWQQMVRMLRACIRSLLKFVNSGN 197

Query: 61  GIVGIAMILYGIWLMRAWQRHLGHLPYEGPNDPIPWFMYSFLGLGILLCVITCLGHIAAE 120
           G+VGIAMILYGIWLMRAWQRHLGHLPYEGPNDPIPWF YSFLGLGILLCVITCLGHIAAE
Sbjct: 198 GMVGIAMILYGIWLMRAWQRHLGHLPYEGPNDPIPWFTYSFLGLGILLCVITCLGHIAAE 257

Query: 121 TANGCCLHLYMVLVFMVLMVEAGVTTDVFLNHDWEEDFPKDPSGSFDQFKHFIKLNFNIC 180
           TANGCCLHLYM+L+FMV+MVEAGVTTDVFLN DW EDFPKDPSG FDQFKHFIK NFNIC
Sbjct: 258 TANGCCLHLYMLLLFMVIMVEAGVTTDVFLNRDWAEDFPKDPSGCFDQFKHFIKSNFNIC 317

Query: 181 KWIGISMVSIQPKLLSILITLFM 186
           KWIGIS VSIQ   LS+L+ + +
Sbjct: 318 KWIGISTVSIQG--LSLLLAMVL 338

[Close]

BLAST of Lsi10G008910 vs. NCBI nr
Match: KAA0062078.1 (tetraspanin-19 [Cucumis melo var. makuwa] >TYK04942.1 tetraspanin-19 [Cucumis melo var. makuwa])

HSP 1 Score: 291.2 bits (744), Expect = 6.3e-75
Identity = 137/156 (87.82%), Postives = 146/156 (93.59%), Query Frame = 0


Query: 30  CMQSLLKFVNSGNGIVGIAMILYGIWLMRAWQRHLGHLPYEGPNDPIPWFMYSFLGLGIL 89
           CMQSLLKFVNSGNG+VGIAMILYGIWLMRAWQRHLGHLPYEGP+DPIPWFMYSFLGLGIL
Sbjct: 8   CMQSLLKFVNSGNGMVGIAMILYGIWLMRAWQRHLGHLPYEGPSDPIPWFMYSFLGLGIL 67

Query: 90  LCVITCLGHIAAETANGCCLHLYMVLVFMVLMVEAGVTTDVFLNHDWEEDFPKDPSGSFD 149
           LCVITCLGHIAAETANGCCLHLYM+L+FMV+MVEAGVTTDVFLN DW EDFPKDPSG FD
Sbjct: 68  LCVITCLGHIAAETANGCCLHLYMLLLFMVIMVEAGVTTDVFLNRDWAEDFPKDPSGCFD 127

Query: 150 QFKHFIKLNFNICKWIGISMVSIQPKLLSILITLFM 186
           QFKHFIK NFNICKWIGIS VSIQ   LS+L+ + +
Sbjct: 128 QFKHFIKSNFNICKWIGISTVSIQG--LSLLLAMVL 161

[Close]

BLAST of Lsi10G008910 vs. NCBI nr
Match: XP_008448284.1 (PREDICTED: tetraspanin-19 [Cucumis melo])

HSP 1 Score: 291.2 bits (744), Expect = 6.3e-75
Identity = 137/156 (87.82%), Postives = 146/156 (93.59%), Query Frame = 0


Query: 30  CMQSLLKFVNSGNGIVGIAMILYGIWLMRAWQRHLGHLPYEGPNDPIPWFMYSFLGLGIL 89
           CMQSLLKFVNSGNG+VGIAMILYGIWLMRAWQRHLGHLPYEGP+DPIPWFMYSFLGLGIL
Sbjct: 8   CMQSLLKFVNSGNGMVGIAMILYGIWLMRAWQRHLGHLPYEGPSDPIPWFMYSFLGLGIL 67

Query: 90  LCVITCLGHIAAETANGCCLHLYMVLVFMVLMVEAGVTTDVFLNHDWEEDFPKDPSGSFD 149
           LCVITCLGHIAAETANGCCLHLYM+L+FMV+MVEAGVTTDVFLN DW EDFPKDPSG FD
Sbjct: 68  LCVITCLGHIAAETANGCCLHLYMLLLFMVIMVEAGVTTDVFLNRDWAEDFPKDPSGCFD 127

Query: 150 QFKHFIKLNFNICKWIGISMVSIQPKLLSILITLFM 186
           QFKHFIK NFNICKWIGIS VSIQ   LS+L+ + +
Sbjct: 128 QFKHFIKSNFNICKWIGISTVSIQG--LSLLLAMVL 161

[Close]

BLAST of Lsi10G008910 vs. NCBI nr
Match: XP_038902884.1 (tetraspanin-19 isoform X1 [Benincasa hispida])

HSP 1 Score: 290.4 bits (742), Expect = 1.1e-74
Identity = 139/157 (88.54%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 29  VCMQSLLKFVNSGNGIVGIAMILYGIWLMRAWQRHLGHLPYEGPNDPIPWFMYSFLGLGI 88
           +CMQSLLKFVNSGNG+VGIAMILYGIWL+RAWQRH GHLPY GP+DPIPWFMYSF GLGI
Sbjct: 83  ICMQSLLKFVNSGNGMVGIAMILYGIWLIRAWQRHFGHLPY-GPSDPIPWFMYSFFGLGI 142

Query: 89  LLCVITCLGHIAAETANGCCLHLYMVLVFMVLMVEAGVTTDVFLNHDWEEDFPKDPSGSF 148
           LLCVITCLGHIAAETANGCCLHLYMVLVFMVLMVEAGVTTDVFLN DWEEDFPKDPSGSF
Sbjct: 143 LLCVITCLGHIAAETANGCCLHLYMVLVFMVLMVEAGVTTDVFLNRDWEEDFPKDPSGSF 202

Query: 149 DQFKHFIKLNFNICKWIGISMVSIQPKLLSILITLFM 186
           DQFKHFIKLNF+ICKWIGISMVSIQ   LS+L+ + +
Sbjct: 203 DQFKHFIKLNFDICKWIGISMVSIQG--LSLLLAMVL 236

[Close]

BLAST of Lsi10G008910 vs. NCBI nr
Match: XP_038902885.1 (tetraspanin-19 isoform X2 [Benincasa hispida] >XP_038902886.1 tetraspanin-19 isoform X2 [Benincasa hispida])

HSP 1 Score: 290.4 bits (742), Expect = 1.1e-74
Identity = 139/157 (88.54%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 29  VCMQSLLKFVNSGNGIVGIAMILYGIWLMRAWQRHLGHLPYEGPNDPIPWFMYSFLGLGI 88
           +CMQSLLKFVNSGNG+VGIAMILYGIWL+RAWQRH GHLPY GP+DPIPWFMYSF GLGI
Sbjct: 7   ICMQSLLKFVNSGNGMVGIAMILYGIWLIRAWQRHFGHLPY-GPSDPIPWFMYSFFGLGI 66

Query: 89  LLCVITCLGHIAAETANGCCLHLYMVLVFMVLMVEAGVTTDVFLNHDWEEDFPKDPSGSF 148
           LLCVITCLGHIAAETANGCCLHLYMVLVFMVLMVEAGVTTDVFLN DWEEDFPKDPSGSF
Sbjct: 67  LLCVITCLGHIAAETANGCCLHLYMVLVFMVLMVEAGVTTDVFLNRDWEEDFPKDPSGSF 126

Query: 149 DQFKHFIKLNFNICKWIGISMVSIQPKLLSILITLFM 186
           DQFKHFIKLNF+ICKWIGISMVSIQ   LS+L+ + +
Sbjct: 127 DQFKHFIKLNFDICKWIGISMVSIQG--LSLLLAMVL 160

[Close]

BLAST of Lsi10G008910 vs. TAIR 10
Match: AT2G20740.1 (Tetraspanin family protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.6e-55
Identity = 94/156 (60.26%), Postives = 123/156 (78.85%), Query Frame = 0


Query: 30  CMQSLLKFVNSGNGIVGIAMILYGIWLMRAWQRHLGHLPYEGPNDPIPWFMYSFLGLGIL 89
           C+QS+LK VNS  G+VGIAMILY +WL+R WQ  +G+LP+   + P+PWF+YSFLGLG +
Sbjct: 8   CLQSMLKLVNSLIGMVGIAMILYAVWLIRQWQEQMGNLPFADSDHPVPWFIYSFLGLGAI 67

Query: 90  LCVITCLGHIAAETANGCCLHLYMVLVFMVLMVEAGVTTDVFLNHDWEEDFPKDPSGSFD 149
           LCV+TC GHIAAET NGCCL+LYM  + ++ MVE GV  D+FLN DW++DFP+DPSG+F 
Sbjct: 68  LCVVTCAGHIAAETVNGCCLYLYMGFIVLLTMVEGGVVADIFLNRDWKKDFPEDPSGAFH 127

Query: 150 QFKHFIKLNFNICKWIGISMVSIQPKLLSILITLFM 186
           QF  FI+ NF ICKWIG+S+V +Q   LS+LI + +
Sbjct: 128 QFSKFIESNFKICKWIGLSIVCVQG--LSVLIAMLL 161

[Close]

BLAST of Lsi10G008910 vs. TAIR 10
Match: AT2G20740.2 (Tetraspanin family protein )

HSP 1 Score: 166.0 bits (419), Expect = 2.9e-41
Identity = 72/122 (59.02%), Postives = 96/122 (78.69%), Query Frame = 0


Query: 64  LGHLPYEGPNDPIPWFMYSFLGLGILLCVITCLGHIAAETANGCCLHLYMVLVFMVLMVE 123
           +G+LP+   + P+PWF+YSFLGLG +LCV+TC GHIAAET NGCCL+LYM  + ++ MVE
Sbjct: 1   MGNLPFADSDHPVPWFIYSFLGLGAILCVVTCAGHIAAETVNGCCLYLYMGFIVLLTMVE 60

Query: 124 AGVTTDVFLNHDWEEDFPKDPSGSFDQFKHFIKLNFNICKWIGISMVSIQPKLLSILITL 183
            GV  D+FLN DW++DFP+DPSG+F QF  FI+ NF ICKWIG+S+V +Q   LS+LI +
Sbjct: 61  GGVVADIFLNRDWKKDFPEDPSGAFHQFSKFIESNFKICKWIGLSIVCVQG--LSVLIAM 120

Query: 184 FM 186
            +
Sbjct: 121 LL 120

[Close]

BLAST of Lsi10G008910 vs. TAIR 10
Match: AT2G20230.1 (Tetraspanin family protein )

HSP 1 Score: 124.8 bits (312), Expect = 7.3e-29
Identity = 64/199 (32.16%), Postives = 105/199 (52.76%), Query Frame = 0


Query: 29  VCMQSLLKFVNSGNGIVGIAMILYGIWLMRAWQRHLG-------------------HLPY 88
           V   S LK +N     +G+++I+Y IW++  + RHL                      P 
Sbjct: 8   VSFASTLKILNFVQAFIGVSIIIYSIWMLHEYSRHLPVDPPPSASSSSGTEIATSVSEPL 67

Query: 89  EGPND-----------------------PIPWFMYSFLGLGILLCVITCLGHIAAETANG 148
           + P D                       P PWF+YSF+ +GIL+C++T +G IAAE  NG
Sbjct: 68  KNPIDFVASIILGSNGGDHGFNLRSLDLPAPWFIYSFMAVGILVCIVTFIGFIAAEAING 127

Query: 149 CCLHLYMVLVFMVLMVEAGVTTDVFLNHDWEEDFPKDPSGSFDQFKHFIKLNFNICKWIG 186
           CCL  Y +L  +++++EA +   + ++  WE+D P DP+G     + FI+ N +ICKW+G
Sbjct: 128 CCLCFYSILKTLLILLEAALVAYIAIDRHWEKDLPYDPTGELSSLRAFIEENIDICKWVG 187

[Close]

BLAST of Lsi10G008910 vs. TAIR 10
Match: AT4G28770.1 (Tetraspanin family protein )

HSP 1 Score: 115.9 bits (289), Expect = 3.4e-26
Identity = 64/210 (30.48%), Postives = 104/210 (49.52%), Query Frame = 0


Query: 29  VCMQSLLKFVNSGNGIVGIAMILYGIWLMRAWQRHL------------------------ 88
           V   S+LK +N     +GI++I+Y IW++  +  H+                        
Sbjct: 8   VSFASILKILNFLQAFIGISIIIYSIWMLDQYNHHVPVDPPPSQPPAASSPDSSYSFSNS 67

Query: 89  -------------------GHLPYEGPND----------PIPWFMYSFLGLGILLCVITC 148
                              G +   G  D          P PWF+Y F+ +GIL+C++T 
Sbjct: 68  IIEINSVSDSLKNPIDFVSGIVLGSGGGDSGFNLRSLDLPAPWFIYCFMAIGILVCIVTI 127

Query: 149 LGHIAAETANGCCLHLYMVLVFMVLMVEAGVTTDVFLNHDWEEDFPKDPSGSFDQFKHFI 186
           +G IAAE  NGCCL  Y +L  +++++EA +   + ++  WE+D P DP+G  +  + FI
Sbjct: 128 IGFIAAEAINGCCLCFYSILKTLLIIIEAALVGFIVIDRHWEKDLPYDPTGELNSLRAFI 187

[Close]

BLAST of Lsi10G008910 vs. TAIR 10
Match: AT4G28770.2 (Tetraspanin family protein )

HSP 1 Score: 115.9 bits (289), Expect = 3.4e-26
Identity = 64/210 (30.48%), Postives = 104/210 (49.52%), Query Frame = 0


Query: 29  VCMQSLLKFVNSGNGIVGIAMILYGIWLMRAWQRHL------------------------ 88
           V   S+LK +N     +GI++I+Y IW++  +  H+                        
Sbjct: 52  VSFASILKILNFLQAFIGISIIIYSIWMLDQYNHHVPVDPPPSQPPAASSPDSSYSFSNS 111

Query: 89  -------------------GHLPYEGPND----------PIPWFMYSFLGLGILLCVITC 148
                              G +   G  D          P PWF+Y F+ +GIL+C++T 
Sbjct: 112 IIEINSVSDSLKNPIDFVSGIVLGSGGGDSGFNLRSLDLPAPWFIYCFMAIGILVCIVTI 171

Query: 149 LGHIAAETANGCCLHLYMVLVFMVLMVEAGVTTDVFLNHDWEEDFPKDPSGSFDQFKHFI 186
           +G IAAE  NGCCL  Y +L  +++++EA +   + ++  WE+D P DP+G  +  + FI
Sbjct: 172 IGFIAAEAINGCCLCFYSILKTLLIIIEAALVGFIVIDRHWEKDLPYDPTGELNSLRAFI 231

The following BLAST results are available for this feature:

BLAST of Lsi10G008910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940P5	2.2e-54	60.26	Tetraspanin-19 OS=Arabidopsis thaliana OX=3702 GN=TOM2AH3 PE=2 SV=1	[more]
Q93XY5	1.0e-27	32.16	Tetraspanin-18 OS=Arabidopsis thaliana OX=3702 GN=TOM2AH2 PE=1 SV=1	[more]
Q9SVU4	4.8e-25	30.48	Tetraspanin-20 OS=Arabidopsis thaliana OX=3702 GN=TOM2AH1 PE=1 SV=1	[more]
Q9C5W7	1.9e-18	26.97	Tobamovirus multiplication protein 2A OS=Arabidopsis thaliana OX=3702 GN=TOM2A P...	[more]

BLAST of Lsi10G008910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C188	3.1e-75	87.82	Tetraspanin-19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00156...	[more]
A0A1S3BK78	3.1e-75	87.82	tetraspanin-19 OS=Cucumis melo OX=3656 GN=LOC103490521 PE=4 SV=1	[more]
A0A0A0KEA2	3.4e-74	86.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G128570 PE=4 SV=1	[more]
A0A6J1HZX7	5.1e-70	81.41	tetraspanin-19 OS=Cucurbita maxima OX=3661 GN=LOC111469621 PE=4 SV=1	[more]
A0A6J1G704	1.1e-69	80.77	tetraspanin-19 OS=Cucurbita moschata OX=3662 GN=LOC111451441 PE=4 SV=1	[more]

BLAST of Lsi10G008910 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646859.1	5.5e-87	79.31	hypothetical protein Csa_020892 [Cucumis sativus]	[more]
KAA0062078.1	6.3e-75	87.82	tetraspanin-19 [Cucumis melo var. makuwa] >TYK04942.1 tetraspanin-19 [Cucumis me...	[more]
XP_008448284.1	6.3e-75	87.82	PREDICTED: tetraspanin-19 [Cucumis melo]	[more]
XP_038902884.1	1.1e-74	88.54	tetraspanin-19 isoform X1 [Benincasa hispida]	[more]
XP_038902885.1	1.1e-74	88.54	tetraspanin-19 isoform X2 [Benincasa hispida] >XP_038902886.1 tetraspanin-19 iso...	[more]

BLAST of Lsi10G008910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20740.1	1.6e-55	60.26	Tetraspanin family protein	[more]
AT2G20740.2	2.9e-41	59.02	Tetraspanin family protein	[more]
AT2G20230.1	7.3e-29	32.16	Tetraspanin family protein	[more]
AT4G28770.1	3.4e-26	30.48	Tetraspanin family protein	[more]
AT4G28770.2	3.4e-26	30.48	Tetraspanin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.630.30		coord: 1..46 e-value: 5.8E-6 score: 27.8
None	No IPR available	PANTHER	PTHR19282:SF158	TETRASPANIN-19	coord: 29..181
None	No IPR available	PANTHER	PTHR19282	TETRASPANIN	coord: 29..181
IPR018499	Tetraspanin/Peripherin	PFAM	PF00335	Tetraspanin	coord: 34..136 e-value: 7.3E-11 score: 42.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G008910.1	Lsi10G008910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane