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Lsi10G008850 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTCTACAAGCGGTCTCTTTTTCTCCCACGACTTCCATCCACAAAGACGTATATCCAGCTGGTACTGTTGTTCTGAGGGACACTGGCCTTTCTGGAGTTCCATTTTATGTACATCTTGAAGTTAAATCAAAATCTCTCATATTGAGAAATAAGGTAATATGCCCATATTCAATTTTCTGGTTTTATCTTTCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTAGTCATGCAACCCACAAATTCCTTGGACCAAACATAAAGTGGAATTCACAACTTCACTCCCTCCAACTCCAACTCCTTGAGCCAAACACCCCTAAGAAAGTCATTCCAAACAAGCTCAAAGTATCACAAACTTTTAAGTTTGATTCCAGGAAACACAAACACGTTGGCTGGGAATGTGCCCCCAAAAGCAAACTTGGGTGATCTGAGAGGCCTAGCAAGTGGTTTGAATGGTCTGAACAGCTCAACCATGATAGATGGAGGAGAGTTTGATGGAGCAAAGGCGTACAAGGATAGCAAAGTGTGCAACATGCTCACTATGCAAGAGCTCCACAGGAGATATCATGAAGAAACAGGAATAACTTTTGCTTCTCTCTACCCTGGTTGCATTGCCACAACAGGGTTGTTTCGAGAGCACATTCCCCTGTTTAGACTTCTATTTCCACCCTTCCAGAAGTACATCACCAAGGGCTATGTGTCTGAAGAAGAAGCTGGGAAAAGACTTGCGCAGGTCAGTCATGTCCTGAGAAACTAAAGTACTAATAAACTAATTGAGTCATATAGTTAAATGTGTATTTATTAAGGCAATTGACAGACTATGGAATGAATCTCTGACTCCAGGTTGTAAGTGATTCAAGCCTGGAACAATCAGGTGTATATTGGAGCTGGAACAAGAACTCATCCTCATTCCAAAACCAGCTATCCAAAGAAGCCAGTGATGTAGAAAAGGCCCGCAAGTTGTGGGAGATAAGTGAGAAGCTTGTTGGATTGGCGTAAATGCACCAATAAACAGCACTGTTGGCTATTATAGAGAAAAAGCTGAACTCAAGTATATAAGCTAGAATATGACATACATGCTTGAGTAATCCTGAAATATTTGTTCGTAAAAATGCAAAGACAAACATAGTTAAGAACTCCTGAAATTTTGTTTGCCAAAGAATAATGAATTTGCTGTTAGCGAAAGACAGAATATGTGTGCACGCGCGCCTTGAAAGTGTAATGAATTCAACACTCTACCGTGCAAATATTTAGTTTTTGGAATACTGCCCGGATGGTAAGAATCTGAGATGTTTGAAAATACCTTCAAAGGTCTTGGGTTAAACCCCTGGATGAAAATTAAACAAACTCTTTATGGTCTTTATGGTCTTTCAAAGC ATGGCTCTACAAGCGGTCTCTTTTTCTCCCACGACTTCCATCCACAAAGACGTATATCCAGCTGGAAACACAAACACGTTGGCTGGGAATGTGCCCCCAAAAGCAAACTTGGGTGATCTGAGAGGCCTAGCAAGTGGTTTGAATGGTCTGAACAGCTCAACCATGATAGATGGAGGAGAGTTTGATGGAGCAAAGGCGTACAAGGATAGCAAAGTGTGCAACATGCTCACTATGCAAGAGCTCCACAGGAGATATCATGAAGAAACAGGAATAACTTTTGCTTCTCTCTACCCTGGTTGCATTGCCACAACAGGGTTGTTTCGAGAGCACATTCCCCTGTTTAGACTTCTATTTCCACCCTTCCAGAAGTACATCACCAAGGGCTATGTGTCTGAAGAAGAAGCTGGGAAAAGACTTGCGCAGGTTGTAAGTGATTCAAGCCTGGAACAATCAGGTGTATATTGGAGCTGGAACAAGAACTCATCCTCATTCCAAAACCAGCTATCCAAAGAAGCCAGTGATGTAGAAAAGGCCCGCAAGTTGTGGGAGATAAGTGAGAAGCTTGTTGGATTGGCGTAAATGCACCAATAAACAGCACTGTTGGCTATTATAGAGAAAAAGCTGAACTCAAGTATATAAGCTAGAATATGACATACATGCTTGAGTAATCCTGAAATATTTGTTCGTAAAAATGCAAAGACAAACATAGTTAAGAACTCCTGAAATTTTGTTTGCCAAAGAATAATGAATTTGCTGTTAGCGAAAGACAGAATATGTGTGCACGCGCGCCTTGAAAGTGTAATGAATTCAACACTCTACCGTGCAAATATTTAGTTTTTGGAATACTGCCCGGATGGTAAGAATCTGAGATGTTTGAAAATACCTTCAAAGGTCTTGGGTTAAACCCCTGGATGAAAATTAAACAAACTCTTTATGGTCTTTATGGTCTTTCAAAGC ATGGCTCTACAAGCGGTCTCTTTTTCTCCCACGACTTCCATCCACAAAGACGTATATCCAGCTGGAAACACAAACACGTTGGCTGGGAATGTGCCCCCAAAAGCAAACTTGGGTGATCTGAGAGGCCTAGCAAGTGGTTTGAATGGTCTGAACAGCTCAACCATGATAGATGGAGGAGAGTTTGATGGAGCAAAGGCGTACAAGGATAGCAAAGTGTGCAACATGCTCACTATGCAAGAGCTCCACAGGAGATATCATGAAGAAACAGGAATAACTTTTGCTTCTCTCTACCCTGGTTGCATTGCCACAACAGGGTTGTTTCGAGAGCACATTCCCCTGTTTAGACTTCTATTTCCACCCTTCCAGAAGTACATCACCAAGGGCTATGTGTCTGAAGAAGAAGCTGGGAAAAGACTTGCGCAGGTTGTAAGTGATTCAAGCCTGGAACAATCAGGTGTATATTGGAGCTGGAACAAGAACTCATCCTCATTCCAAAACCAGCTATCCAAAGAAGCCAGTGATGTAGAAAAGGCCCGCAAGTTGTGGGAGATAAGTGAGAAGCTTGTTGGATTGGCGTAA MALQAVSFSPTTSIHKDVYPAGNTNTLAGNVPPKANLGDLRGLASGLNGLNSSTMIDGGEFDGAKAYKDSKVCNMLTMQELHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSDSSLEQSGVYWSWNKNSSSFQNQLSKEASDVEKARKLWEISEKLVGLA Homology
BLAST of Lsi10G008850 vs. ExPASy Swiss-Prot
Match: O48741 (Protochlorophyllide reductase C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PORC PE=1 SV=1) HSP 1 Score: 323.9 bits (829), Expect = 1.2e-87 Identity = 160/171 (93.57%), Postives = 165/171 (96.49%), Query Frame = 0
BLAST of Lsi10G008850 vs. ExPASy Swiss-Prot
Match: Q42850 (Protochlorophyllide reductase B, chloroplastic OS=Hordeum vulgare OX=4513 GN=PORB PE=1 SV=1) HSP 1 Score: 319.3 bits (817), Expect = 2.9e-86 Identity = 153/171 (89.47%), Postives = 164/171 (95.91%), Query Frame = 0
BLAST of Lsi10G008850 vs. ExPASy Swiss-Prot
Match: Q9SDT1 (Protochlorophyllide reductase, chloroplastic OS=Daucus carota OX=4039 GN=POR1 PE=2 SV=1) HSP 1 Score: 317.8 bits (813), Expect = 8.6e-86 Identity = 153/171 (89.47%), Postives = 163/171 (95.32%), Query Frame = 0
BLAST of Lsi10G008850 vs. ExPASy Swiss-Prot
Match: Q8W3D9 (Protochlorophyllide reductase B, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PORB PE=2 SV=1) HSP 1 Score: 317.0 bits (811), Expect = 1.5e-85 Identity = 152/171 (88.89%), Postives = 164/171 (95.91%), Query Frame = 0
BLAST of Lsi10G008850 vs. ExPASy Swiss-Prot
Match: Q01289 (Protochlorophyllide reductase, chloroplastic OS=Pisum sativum OX=3888 GN=3PCR PE=1 SV=1) HSP 1 Score: 316.6 bits (810), Expect = 1.9e-85 Identity = 153/171 (89.47%), Postives = 161/171 (94.15%), Query Frame = 0
BLAST of Lsi10G008850 vs. ExPASy TrEMBL
Match: A0A5D3C0W4 (NADPH-protochlorophyllide oxidoreductase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001130 PE=3 SV=1) HSP 1 Score: 338.6 bits (867), Expect = 1.7e-89 Identity = 166/171 (97.08%), Postives = 169/171 (98.83%), Query Frame = 0
BLAST of Lsi10G008850 vs. ExPASy TrEMBL
Match: A0A1S3BIQ2 (NADPH-protochlorophyllide oxidoreductase OS=Cucumis melo OX=3656 GN=LOC103490507 PE=3 SV=1) HSP 1 Score: 338.6 bits (867), Expect = 1.7e-89 Identity = 166/171 (97.08%), Postives = 169/171 (98.83%), Query Frame = 0
BLAST of Lsi10G008850 vs. ExPASy TrEMBL
Match: A0A6J1CI09 (NADPH-protochlorophyllide oxidoreductase OS=Momordica charantia OX=3673 GN=LOC111011353 PE=3 SV=1) HSP 1 Score: 337.0 bits (863), Expect = 5.0e-89 Identity = 166/171 (97.08%), Postives = 168/171 (98.25%), Query Frame = 0
BLAST of Lsi10G008850 vs. ExPASy TrEMBL
Match: A0A5A7V493 (NADPH-protochlorophyllide oxidoreductase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004760 PE=3 SV=1) HSP 1 Score: 336.3 bits (861), Expect = 8.6e-89 Identity = 165/171 (96.49%), Postives = 168/171 (98.25%), Query Frame = 0
BLAST of Lsi10G008850 vs. ExPASy TrEMBL
Match: A0A6J1JF64 (NADPH-protochlorophyllide oxidoreductase OS=Cucurbita maxima OX=3661 GN=LOC111483858 PE=3 SV=1) HSP 1 Score: 334.7 bits (857), Expect = 2.5e-88 Identity = 164/171 (95.91%), Postives = 168/171 (98.25%), Query Frame = 0
BLAST of Lsi10G008850 vs. NCBI nr
Match: XP_038902742.1 (protochlorophyllide reductase [Benincasa hispida]) HSP 1 Score: 344.4 bits (882), Expect = 6.5e-91 Identity = 169/171 (98.83%), Postives = 171/171 (100.00%), Query Frame = 0
BLAST of Lsi10G008850 vs. NCBI nr
Match: XP_008448267.1 (PREDICTED: protochlorophyllide reductase [Cucumis melo] >TYK04908.1 protochlorophyllide reductase [Cucumis melo var. makuwa]) HSP 1 Score: 338.6 bits (867), Expect = 3.6e-89 Identity = 166/171 (97.08%), Postives = 169/171 (98.83%), Query Frame = 0
BLAST of Lsi10G008850 vs. NCBI nr
Match: XP_023512310.1 (protochlorophyllide reductase-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 338.2 bits (866), Expect = 4.7e-89 Identity = 166/171 (97.08%), Postives = 169/171 (98.83%), Query Frame = 0
BLAST of Lsi10G008850 vs. NCBI nr
Match: XP_022140772.1 (protochlorophyllide reductase [Momordica charantia]) HSP 1 Score: 337.0 bits (863), Expect = 1.0e-88 Identity = 166/171 (97.08%), Postives = 168/171 (98.25%), Query Frame = 0
BLAST of Lsi10G008850 vs. NCBI nr
Match: KAA0062120.1 (protochlorophyllide reductase [Cucumis melo var. makuwa]) HSP 1 Score: 336.3 bits (861), Expect = 1.8e-88 Identity = 165/171 (96.49%), Postives = 168/171 (98.25%), Query Frame = 0
BLAST of Lsi10G008850 vs. TAIR 10
Match: AT1G03630.1 (protochlorophyllide oxidoreductase C ) HSP 1 Score: 323.9 bits (829), Expect = 8.5e-89 Identity = 160/171 (93.57%), Postives = 165/171 (96.49%), Query Frame = 0
BLAST of Lsi10G008850 vs. TAIR 10
Match: AT1G03630.2 (protochlorophyllide oxidoreductase C ) HSP 1 Score: 323.9 bits (829), Expect = 8.5e-89 Identity = 160/171 (93.57%), Postives = 165/171 (96.49%), Query Frame = 0
BLAST of Lsi10G008850 vs. TAIR 10
Match: AT4G27440.1 (protochlorophyllide oxidoreductase B ) HSP 1 Score: 315.1 bits (806), Expect = 3.9e-86 Identity = 152/171 (88.89%), Postives = 162/171 (94.74%), Query Frame = 0
BLAST of Lsi10G008850 vs. TAIR 10
Match: AT4G27440.2 (protochlorophyllide oxidoreductase B ) HSP 1 Score: 315.1 bits (806), Expect = 3.9e-86 Identity = 152/171 (88.89%), Postives = 162/171 (94.74%), Query Frame = 0
BLAST of Lsi10G008850 vs. TAIR 10
Match: AT5G54190.1 (protochlorophyllide oxidoreductase A ) HSP 1 Score: 313.9 bits (803), Expect = 8.8e-86 Identity = 151/171 (88.30%), Postives = 162/171 (94.74%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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