![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Lsi10G008770 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAAAAAAAAGGAAAAGAGGCAGATTCTAATTTTCCCGTGAAATTTGGTGTTTGAAATCCTAATATTAGCAAATCTCTCGCATGTTTTTTGGAGGGGTCTTTTTTATCTCATTTTGGATCCTATTTTTTTCCTAAAATTTTAAAAGGAAAAAGAAACAAGGTCCGATTATCTTCCCTCTTCCATTTCTGTCTCTCTAGTCTTTTTCGGTGCTCTGTTTTTCGGTTTGCTTTCCGGGAATCCTCTCTGCTTTTCAGGGTTGGGGGGAAGACTCTGAAAAATTTGTCTCTCTCCCTCTCCTCCAAAATTATGATTCTTGACAAAGGGTCAATGCAATCCAATTTGGGTTGCTTTCTCCATTGCACCACGCCGGTTGTCAATTCCCAATTCTTGCCTAAGGTTTGTACTCATTCTTTCATTCTTTCCCATTCCCCCTTTTATCCGCTTTTGATTGATTTATTGATCCATCTTTGTTCCCTTTTGTTAGAGTGAGATTAGGAATCTTAATCGTCTATGGCATCCATGGGAGAGAGAGAAGGTTGAATATTTCACCCTCGCCGATCTCTGGAATTCTTACGACGAATGGAGCGCTTACGGTGCCGGTGTTCCCATCGCCGTCAACAACGGCGAGACCCTTGTTCAATACTATGTTCCTTATCTCTCTGCAATCCAAATCTTCACCAGCAATTCCACCGTCAATGGTTTCAGGTACCAATTCCCTTTTCCCCCCCAAATAAATTATGTTTACCCAGTTGTGATCGTCGACCCAGAAACCCCAATTAGATGATTATATTCAATTTTTTTATAATCCATTGATCGTTTAAAGAAAACCCCAAATAATGAATCCCTCTTTTTGTAGGGATGAATGCGGTGACAGTGAAACAAGGGATTCGTTCAGTGATTCTTGCAGCGATGAGAGTGAAAGTGAAAAATTATGGAGATGGGACGGAAGCTCATCAGAAGAGGGAGGATTCTTAGAGCAAGAAAGTCCTCTGCATCTCAGTGAGAGATTGGGATATCTTTACTTTCAGTATTTCGAGAGATCAACTCCATACGGAAGAGTTCCATTAATGGATAAGGTAGAACTAAAACCCCCCCATTTTACTTGGAATTTTGTATTTAGATTATGACTAGAAATGCTTAATGAATGGTGTGGAATCATATGGATTTTGTTTATTTATGCTTTTATGTGTTTGGCATCTACTAAAGAAGAAAACCCAAACTTTTTTGACCTTTGAATATGGTTGCTGAATCTGTGCTATACCCACTTCTATATTGTG AAAAAAAAAAAAGGAAAAGAGGCAGATTCTAATTTTCCCGTGAAATTTGGTGTTTGAAATCCTAATATTAGCAAATCTCTCGCATGTTTTTTGGAGGGGTCTTTTTTATCTCATTTTGGATCCTATTTTTTTCCTAAAATTTTAAAAGGAAAAAGAAACAAGGTCCGATTATCTTCCCTCTTCCATTTCTGTCTCTCTAGTCTTTTTCGGTGCTCTGTTTTTCGGTTTGCTTTCCGGGAATCCTCTCTGCTTTTCAGGGTTGGGGGGAAGACTCTGAAAAATTTGTCTCTCTCCCTCTCCTCCAAAATTATGATTCTTGACAAAGGGTCAATGCAATCCAATTTGGGTTGCTTTCTCCATTGCACCACGCCGGTTGTCAATTCCCAATTCTTGCCTAAGAGTGAGATTAGGAATCTTAATCGTCTATGGCATCCATGGGAGAGAGAGAAGGTTGAATATTTCACCCTCGCCGATCTCTGGAATTCTTACGACGAATGGAGCGCTTACGGTGCCGGTGTTCCCATCGCCGTCAACAACGGCGAGACCCTTGTTCAATACTATGTTCCTTATCTCTCTGCAATCCAAATCTTCACCAGCAATTCCACCGTCAATGGGATGAATGCGGTGACAGTGAAACAAGGGATTCGTTCAGTGATTCTTGCAGCGATGAGAGTGAAAGTGAAAAATTATGGAGATGGGACGGAAGCTCATCAGAAGAGGGAGGATTCTTAGAGCAAGAAAGTCCTCTGCATCTCAGTGAGAGATTGGGATATCTTTACTTTCAGTATTTCGAGAGATCAACTCCATACGGAAGAGTTCCATTAATGGATAAGGTAGAACTAAAACCCCCCCATTTTACTTGGAATTTTGTATTTAGATTATGACTAGAAATGCTTAATGAATGGTGTGGAATCATATGGATTTTGTTTATTTATGCTTTTATGTGTTTGGCATCTACTAAAGAAGAAAACCCAAACTTTTTTGACCTTTGAATATGGTTGCTGAATCTGTGCTATACCCACTTCTATATTGTG ATGATTCTTGACAAAGGGTCAATGCAATCCAATTTGGGTTGCTTTCTCCATTGCACCACGCCGGTTGTCAATTCCCAATTCTTGCCTAAGAGTGAGATTAGGAATCTTAATCGTCTATGGCATCCATGGGAGAGAGAGAAGGTTGAATATTTCACCCTCGCCGATCTCTGGAATTCTTACGACGAATGGAGCGCTTACGGTGCCGGTGTTCCCATCGCCGTCAACAACGGCGAGACCCTTGTTCAATACTATGTTCCTTATCTCTCTGCAATCCAAATCTTCACCAGCAATTCCACCGTCAATGGGATGAATGCGGTGACAGTGAAACAAGGGATTCGTTCAGTGATTCTTGCAGCGATGAGAGTGAAAGTGAAAAATTATGGAGATGGGACGGAAGCTCATCAGAAGAGGGAGGATTCTTAG MILDKGSMQSNLGCFLHCTTPVVNSQFLPKSEIRNLNRLWHPWEREKVEYFTLADLWNSYDEWSAYGAGVPIAVNNGETLVQYYVPYLSAIQIFTSNSTVNGMNAVTVKQGIRSVILAAMRVKVKNYGDGTEAHQKREDS Homology
BLAST of Lsi10G008770 vs. ExPASy TrEMBL
Match: A0A6J1JDS8 (uncharacterized protein LOC111484110 OS=Cucurbita maxima OX=3661 GN=LOC111484110 PE=4 SV=1) HSP 1 Score: 216.9 bits (551), Expect = 5.5e-53 Identity = 100/102 (98.04%), Postives = 100/102 (98.04%), Query Frame = 0
BLAST of Lsi10G008770 vs. ExPASy TrEMBL
Match: A0A6J1FWT0 (uncharacterized protein LOC111448145 OS=Cucurbita moschata OX=3662 GN=LOC111448145 PE=4 SV=1) HSP 1 Score: 216.9 bits (551), Expect = 5.5e-53 Identity = 100/102 (98.04%), Postives = 100/102 (98.04%), Query Frame = 0
BLAST of Lsi10G008770 vs. ExPASy TrEMBL
Match: A0A0A0KG73 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G128660 PE=4 SV=1) HSP 1 Score: 213.4 bits (542), Expect = 6.1e-52 Identity = 99/102 (97.06%), Postives = 99/102 (97.06%), Query Frame = 0
BLAST of Lsi10G008770 vs. ExPASy TrEMBL
Match: A0A1S3BIR2 (uncharacterized protein LOC103490514 OS=Cucumis melo OX=3656 GN=LOC103490514 PE=4 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 1.8e-51 Identity = 98/102 (96.08%), Postives = 99/102 (97.06%), Query Frame = 0
BLAST of Lsi10G008770 vs. ExPASy TrEMBL
Match: A0A5D3C173 (DUF789 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001440 PE=4 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 1.8e-51 Identity = 98/102 (96.08%), Postives = 99/102 (97.06%), Query Frame = 0
BLAST of Lsi10G008770 vs. NCBI nr
Match: XP_038900400.1 (uncharacterized protein LOC120087632 [Benincasa hispida]) HSP 1 Score: 218.4 bits (555), Expect = 3.9e-53 Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0
BLAST of Lsi10G008770 vs. NCBI nr
Match: XP_022986335.1 (uncharacterized protein LOC111484110 [Cucurbita maxima]) HSP 1 Score: 216.9 bits (551), Expect = 1.1e-52 Identity = 100/102 (98.04%), Postives = 100/102 (98.04%), Query Frame = 0
BLAST of Lsi10G008770 vs. NCBI nr
Match: XP_022943358.1 (uncharacterized protein LOC111448145 [Cucurbita moschata]) HSP 1 Score: 216.9 bits (551), Expect = 1.1e-52 Identity = 100/102 (98.04%), Postives = 100/102 (98.04%), Query Frame = 0
BLAST of Lsi10G008770 vs. NCBI nr
Match: XP_023511831.1 (uncharacterized protein LOC111776733 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 214.5 bits (545), Expect = 5.7e-52 Identity = 99/102 (97.06%), Postives = 99/102 (97.06%), Query Frame = 0
BLAST of Lsi10G008770 vs. NCBI nr
Match: KAG7010693.1 (hypothetical protein SDJN02_27489 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 213.8 bits (543), Expect = 9.7e-52 Identity = 99/102 (97.06%), Postives = 99/102 (97.06%), Query Frame = 0
BLAST of Lsi10G008770 vs. TAIR 10
Match: AT4G03420.1 (Protein of unknown function (DUF789) ) HSP 1 Score: 156.0 bits (393), Expect = 2.2e-38 Identity = 72/100 (72.00%), Postives = 85/100 (85.00%), Query Frame = 0
BLAST of Lsi10G008770 vs. TAIR 10
Match: AT1G03610.1 (Protein of unknown function (DUF789) ) HSP 1 Score: 154.8 bits (390), Expect = 5.0e-38 Identity = 73/101 (72.28%), Postives = 85/101 (84.16%), Query Frame = 0
BLAST of Lsi10G008770 vs. TAIR 10
Match: AT4G28150.1 (Protein of unknown function (DUF789) ) HSP 1 Score: 139.0 bits (349), Expect = 2.8e-33 Identity = 63/99 (63.64%), Postives = 76/99 (76.77%), Query Frame = 0
BLAST of Lsi10G008770 vs. TAIR 10
Match: AT4G28150.2 (Protein of unknown function (DUF789) ) HSP 1 Score: 132.5 bits (332), Expect = 2.6e-31 Identity = 63/99 (63.64%), Postives = 74/99 (74.75%), Query Frame = 0
BLAST of Lsi10G008770 vs. TAIR 10
Match: AT4G16100.1 (Protein of unknown function (DUF789) ) HSP 1 Score: 100.9 bits (250), Expect = 8.5e-22 Identity = 47/93 (50.54%), Postives = 63/93 (67.74%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|