Lsi10G008750 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G008750
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Cell wall protein
Location	chr10: 12971112 .. 12971429 (-)
RNA-Seq Expression	Lsi10G008750
Synteny	Lsi10G008750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCTCGCAATAACTGGAGCAGTTGAAGCTCGCAATTTTCGTGAAAGGTCGAGCATTGATGATGATAAGAAACAGCCTCAGTGGCTAGTTGGATATGATGGGGTCAGTGTGCTCATTCCCGGCATTGGACGCATCACATTGTCGCCATATGAAAAAGGCAGACATGGAGGAGGACATGCGAGTTCATATGGCAGTAACCCAGCTCCAAGACGTCAATATATTCCAGGTGGGGATGACAATTTCATTCCAAATCCTGGATTTGAGGTGCCAATCCCTGCCAATATTGGTGGTGTTAAAGAAACATCCTATCCTTGA

mRNA sequence

ATGATCCTCGCAATAACTGGAGCAGTTGAAGCTCGCAATTTTCGTGAAAGGTCGAGCATTGATGATGATAAGAAACAGCCTCAGTGGCTAGTTGGATATGATGGGGTCAGTGTGCTCATTCCCGGCATTGGACGCATCACATTGTCGCCATATGAAAAAGGCAGACATGGAGGAGGACATGCGAGTTCATATGGCAGTAACCCAGCTCCAAGACGTCAATATATTCCAGGTGGGGATGACAATTTCATTCCAAATCCTGGATTTGAGGTGCCAATCCCTGCCAATATTGGTGGTGTTAAAGAAACATCCTATCCTTGA

Coding sequence (CDS)

ATGATCCTCGCAATAACTGGAGCAGTTGAAGCTCGCAATTTTCGTGAAAGGTCGAGCATTGATGATGATAAGAAACAGCCTCAGTGGCTAGTTGGATATGATGGGGTCAGTGTGCTCATTCCCGGCATTGGACGCATCACATTGTCGCCATATGAAAAAGGCAGACATGGAGGAGGACATGCGAGTTCATATGGCAGTAACCCAGCTCCAAGACGTCAATATATTCCAGGTGGGGATGACAATTTCATTCCAAATCCTGGATTTGAGGTGCCAATCCCTGCCAATATTGGTGGTGTTAAAGAAACATCCTATCCTTGA

Protein sequence

MILAITGAVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPYEKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGGVKETSYP

Homology

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BLAST of Lsi10G008750 vs. ExPASy Swiss-Prot
Match: P47925 (Putative cell wall protein OS=Arabidopsis thaliana OX=3702 GN=At2g20870 PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 7.4e-07
Identity = 36/106 (33.96%), Postives = 46/106 (43.40%), Query Frame = 0


Query: 1   MILAITGAVEARNFRERSSIDDDKKQPQWLVGYD-GVSVLIPGIGRITLSPYEKGRH--- 60
           ++L     V       +S    D K P +LV  +   ++LIPG+GR  L P  K      
Sbjct: 17  LVLGSVEQVSGLRHVPKSPKTTDVKHPDFLVTIEPKPTILIPGVGRFLLPPKCKKPFYPY 76

Query: 61  ---------GGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIP 94
                    GGG  S  G   A     +PGGDD  +PNPGFE P P
Sbjct: 77  NPVTGAPLTGGGIPSYNGGQGAGPHTQLPGGDDTLVPNPGFEAPTP 122

[Close]

BLAST of Lsi10G008750 vs. ExPASy TrEMBL
Match: A0A6J1I1F6 (putative cell wall protein OS=Cucurbita maxima OX=3661 GN=LOC111469644 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.4e-39
Identity = 84/106 (79.25%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 1   MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPYEKGRHGGG 60
           +ILAI G AV ARN  ERSSI DDKKQP+W+ G+DGVSVLIPGIGR TLSP++KG  G G
Sbjct: 15  VILAIAGEAVAARNVHERSSI-DDKKQPEWVAGHDGVSVLIPGIGRFTLSPHDKGSSGEG 74

Query: 61  HASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGGVKETSYP 106
            A SYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPA I GVKET YP
Sbjct: 75  QAGSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPAKISGVKETPYP 119

[Close]

BLAST of Lsi10G008750 vs. ExPASy TrEMBL
Match: A0A6J1CFL0 (putative cell wall protein OS=Momordica charantia OX=3673 GN=LOC111011227 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 82/106 (77.36%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 1   MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPYEKGRHGGG 60
           +ILA+ G A  ARN RE+SSI DDKKQPQWLVGYDGVSVLIPGIGRITL PY+KG   G 
Sbjct: 16  IILAVAGEAAAARNAREKSSI-DDKKQPQWLVGYDGVSVLIPGIGRITLPPYDKGSF-GE 75

Query: 61  HASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGGVKETSYP 106
           HA SYGSNPA   QYIPGGDDNFIPNPGFEVP PANIG VK T +P
Sbjct: 76  HAGSYGSNPASSGQYIPGGDDNFIPNPGFEVPNPANIGVVKATPHP 119

[Close]

BLAST of Lsi10G008750 vs. ExPASy TrEMBL
Match: A0A5D3BC54 (Putative cell wall protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold464G00120 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.9e-32
Identity = 75/106 (70.75%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 1   MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPYEKGRHGGG 60
           +ILA+TG AV AR+F E                    SVLIPGIGRITLSPY+KG HGGG
Sbjct: 15  VILAMTGEAVAARDFPE--------------------SVLIPGIGRITLSPYDKGSHGGG 74

Query: 61  HASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGGVKETSYP 106
           H+SSYGSNPAP+RQYIPGGDDNFIPNPG+EVPIPANIGGVKETSYP
Sbjct: 75  HSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP 100

[Close]

BLAST of Lsi10G008750 vs. ExPASy TrEMBL
Match: A0A0A0KCX5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124140 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.2e-21
Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 36  VSVLIPGIGRITLSPYEKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPAN 95
           VSVLIPGIGR+TLS        GGH+SSYGSNPAPRRQYIPGGD NFIPNPG+EV I A+
Sbjct: 30  VSVLIPGIGRLTLS-------RGGHSSSYGSNPAPRRQYIPGGDGNFIPNPGYEVRITAD 89

Query: 96  IGGVKETSYP 106
           IGGVKETSYP
Sbjct: 90  IGGVKETSYP 92

[Close]

BLAST of Lsi10G008750 vs. ExPASy TrEMBL
Match: M5XEW2 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G234900 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.9e-16
Identity = 50/109 (45.87%), Postives = 64/109 (58.72%), Query Frame = 0


Query: 1   MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPY-------- 60
           ++LAITG AV  R+   +    DDKKQP+W +G+DG S LIPG+GR+ + P         
Sbjct: 18  VLLAITGQAVAGRSVPTK----DDKKQPEWFIGHDG-SYLIPGLGRVLIPPRHNVVPQTP 77

Query: 61  --EKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGG 99
               GR G    S  G  P+    Y+PGGDD F+PNPG+EVPIP N  G
Sbjct: 78  FPNNGRTGSTGGSGSGQTPSTGHDYVPGGDDTFVPNPGYEVPIPGNGAG 121

[Close]

BLAST of Lsi10G008750 vs. NCBI nr
Match: XP_022970746.1 (putative cell wall protein [Cucurbita maxima])

HSP 1 Score: 170.6 bits (431), Expect = 7.1e-39
Identity = 84/106 (79.25%), Postives = 90/106 (84.91%), Query Frame = 0


Query: 1   MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPYEKGRHGGG 60
           +ILAI G AV ARN  ERSSI DDKKQP+W+ G+DGVSVLIPGIGR TLSP++KG  G G
Sbjct: 15  VILAIAGEAVAARNVHERSSI-DDKKQPEWVAGHDGVSVLIPGIGRFTLSPHDKGSSGEG 74

Query: 61  HASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGGVKETSYP 106
            A SYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPA I GVKET YP
Sbjct: 75  QAGSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPAKISGVKETPYP 119

[Close]

BLAST of Lsi10G008750 vs. NCBI nr
Match: XP_022140620.1 (putative cell wall protein [Momordica charantia])

HSP 1 Score: 158.7 bits (400), Expect = 2.8e-35
Identity = 82/106 (77.36%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 1   MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPYEKGRHGGG 60
           +ILA+ G A  ARN RE+SSI DDKKQPQWLVGYDGVSVLIPGIGRITL PY+KG   G 
Sbjct: 16  IILAVAGEAAAARNAREKSSI-DDKKQPQWLVGYDGVSVLIPGIGRITLPPYDKGSF-GE 75

Query: 61  HASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGGVKETSYP 106
           HA SYGSNPA   QYIPGGDDNFIPNPGFEVP PANIG VK T +P
Sbjct: 76  HAGSYGSNPASSGQYIPGGDDNFIPNPGFEVPNPANIGVVKATPHP 119

[Close]

BLAST of Lsi10G008750 vs. NCBI nr
Match: KAA0065341.1 (putative cell wall protein [Cucumis melo var. makuwa] >TYJ96609.1 putative cell wall protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 1.4e-31
Identity = 75/106 (70.75%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 1   MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPYEKGRHGGG 60
           +ILA+TG AV AR+F E                    SVLIPGIGRITLSPY+KG HGGG
Sbjct: 15  VILAMTGEAVAARDFPE--------------------SVLIPGIGRITLSPYDKGSHGGG 74

Query: 61  HASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGGVKETSYP 106
           H+SSYGSNPAP+RQYIPGGDDNFIPNPG+EVPIPANIGGVKETSYP
Sbjct: 75  HSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP 100

[Close]

BLAST of Lsi10G008750 vs. NCBI nr
Match: XP_034206933.1 (putative cell wall protein [Prunus dulcis] >VVA27151.1 PREDICTED: putative cell [Prunus dulcis])

HSP 1 Score: 94.4 bits (233), Expect = 6.4e-16
Identity = 51/109 (46.79%), Postives = 64/109 (58.72%), Query Frame = 0


Query: 1   MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPY-------- 60
           ++LAITG AV  R+   +    DDKKQP+W +G+DG S LIPGIGR+ + P         
Sbjct: 18  VLLAITGQAVAGRSVPTK----DDKKQPEWFIGHDG-SYLIPGIGRVLIPPLHNVVPQTP 77

Query: 61  --EKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGG 99
               GR G    S  G  P+    Y+PGGDD F+PNPG+EVPIP N  G
Sbjct: 78  FPNNGRTGSTGGSGSGETPSTGHDYVPGGDDTFVPNPGYEVPIPGNGAG 121

[Close]

BLAST of Lsi10G008750 vs. NCBI nr
Match: XP_007216421.1 (putative cell wall protein [Prunus persica] >ONI18729.1 hypothetical protein PRUPE_3G234900 [Prunus persica] >OWR80120.1 hypothetical protein SJDPG4_10125 [Porphyromonas gingivalis SJD4])

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-15
Identity = 50/109 (45.87%), Postives = 64/109 (58.72%), Query Frame = 0


Query: 1   MILAITG-AVEARNFRERSSIDDDKKQPQWLVGYDGVSVLIPGIGRITLSPY-------- 60
           ++LAITG AV  R+   +    DDKKQP+W +G+DG S LIPG+GR+ + P         
Sbjct: 18  VLLAITGQAVAGRSVPTK----DDKKQPEWFIGHDG-SYLIPGLGRVLIPPRHNVVPQTP 77

Query: 61  --EKGRHGGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPANIGG 99
               GR G    S  G  P+    Y+PGGDD F+PNPG+EVPIP N  G
Sbjct: 78  FPNNGRTGSTGGSGSGQTPSTGHDYVPGGDDTFVPNPGYEVPIPGNGAG 121

[Close]

BLAST of Lsi10G008750 vs. TAIR 10
Match: AT2G20870.1 (cell wall protein precursor, putative )

HSP 1 Score: 54.7 bits (130), Expect = 5.3e-08
Identity = 36/106 (33.96%), Postives = 46/106 (43.40%), Query Frame = 0


Query: 1   MILAITGAVEARNFRERSSIDDDKKQPQWLVGYD-GVSVLIPGIGRITLSPYEKGRH--- 60
           ++L     V       +S    D K P +LV  +   ++LIPG+GR  L P  K      
Sbjct: 17  LVLGSVEQVSGLRHVPKSPKTTDVKHPDFLVTIEPKPTILIPGVGRFLLPPKCKKPFYPY 76

Query: 61  ---------GGGHASSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIP 94
                    GGG  S  G   A     +PGGDD  +PNPGFE P P
Sbjct: 77  NPVTGAPLTGGGIPSYNGGQGAGPHTQLPGGDDTLVPNPGFEAPTP 122

The following BLAST results are available for this feature:

BLAST of Lsi10G008750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P47925	7.4e-07	33.96	Putative cell wall protein OS=Arabidopsis thaliana OX=3702 GN=At2g20870 PE=2 SV=...	[more]

BLAST of Lsi10G008750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I1F6	3.4e-39	79.25	putative cell wall protein OS=Cucurbita maxima OX=3661 GN=LOC111469644 PE=4 SV=1	[more]
A0A6J1CFL0	1.3e-35	77.36	putative cell wall protein OS=Momordica charantia OX=3673 GN=LOC111011227 PE=4 S...	[more]
A0A5D3BC54	6.9e-32	70.75	Putative cell wall protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A0A0KCX5	4.2e-21	78.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124140 PE=4 SV=1	[more]
M5XEW2	6.9e-16	45.87	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G234900 PE=4 SV=1	[more]

BLAST of Lsi10G008750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022970746.1	7.1e-39	79.25	putative cell wall protein [Cucurbita maxima]	[more]
XP_022140620.1	2.8e-35	77.36	putative cell wall protein [Momordica charantia]	[more]
KAA0065341.1	1.4e-31	70.75	putative cell wall protein [Cucumis melo var. makuwa] >TYJ96609.1 putative cell ...	[more]
XP_034206933.1	6.4e-16	46.79	putative cell wall protein [Prunus dulcis] >VVA27151.1 PREDICTED: putative cell ...	[more]
XP_007216421.1	1.4e-15	45.87	putative cell wall protein [Prunus persica] >ONI18729.1 hypothetical protein PRU...	[more]

BLAST of Lsi10G008750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20870.1	5.3e-08	33.96	cell wall protein precursor, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..80
IPR034565	Putative cell wall protein	PANTHER	PTHR36733	CELL WALL PROTEIN-RELATED	coord: 3..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G008750.1	Lsi10G008750.1	mRNA