Lsi10G007870 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi10G007870
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTrafficking protein particle complex subunit 2-like
Locationchr10: 10693332 .. 10697316 (-)
RNA-Seq ExpressionLsi10G007870
SyntenyLsi10G007870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAACAATATCCCTATTTATGAAGCTGAAGTCGGATCTGCTGTTAAAGTATTTTCTTCTTCTTCATTTTCCATTTTCTTCTCATGTTTAGGCTAAATATTTCATTCACAAGATCTCCAATAAAAGGTGATCTCGTTTTGATTCTTTAATTACTTTAGTTTTGACTGTCATTAGTCGCTCATCTTTTTGGCTTGACATGAAAGAGAGAGGATTCCGCTCAGCTGCATCAGTTTATATTGCATGCGTCCCTTGACATTGTTCAAGACTTGGCATGGACTACTAGTGCCATGTGAGTTCGTATTCCTTTTAATTTTTTATTAGATCATCGATACAACTCCTTTCTCTTCTTTTTCTTTTTTTTTTTTTGTTTTTTCCTTTGAATTTCGCCTTAGATCCCTTTTCTTGTTGGGTTTTATGCAGGTTCTTGAAAGCAGTCGATAGGTTCAATGATTTGGTGGTGTCTGTCTATGTAACCGCCGGTCATATCCTTTAATGTCGAGGGGATTTGTCAAGCACACTGTGCTGGAAATTGAGTCAAATTTCATTAATTCACTCACTCGTAAATCTCAACTCTAAATTAATAAAAGTTTTATCTTTGAATCTTTGCATTACTAAAGTATATTGATTGATGGAATCTGCAATCAAATTTTGTCATTGTACGGGACGCATGTTTTACTATGATTCTGGCATTCTATATACGTTTGAGAGATTAATTTCGGTTCATAGTTCCTATTGTTTCCTTTTATACCAATATTCTGATTTTCTTTGACTATTCACTACATACGCGATTGATGTTACTTCACGACTCTCGCAATGATGATGGAATCAAGAGCTTTTTTCAAGAGGTTCATGAGCTTTACATAAAGGTAAGTTGGACATGCTTCTTATGTATTATTACTGCTATTGGCAACTGTTGAAGGTGTGGTGCTTGATTTTTTTTTAGTTCAAGAACATGTCGGGTTGGGGAGTATGGTGCTTGATTTACTATATTATATTATTTAGGTTGATCGAAGTATTCCTTAGTTGATTAAGTTACTTTTCCAAAGCTGGGAGATATGCTTTGATTCGGTCAGTTTTGAGTGGCATTCCCATTTACTTCTTTTCTTTGTTTGGATCCCTAGTAAGGTTTGCAAGGACATTGAAAAACTTATGTTTAAATTCCTTTGGGAAGAGGTGGAAGAAGGAAATGGATTGCACTGGGTTAGATGGGAGATCGGTGAACCGGGCAATTAAAAAGTGGTGACTTAAGGACTCATAACAAAACCCTATTAGCTAAATGGCTTTGCCATTTTGCTCTAGATTCTAATACCCTTTGGCACAAGGATATTGCTAGCAAGTATGGGCCTCATCCCTCTGAGTGGTTGTCGGGTGGGGTTAGAGGCACCAACTAGAACTTGTGGAAGGATATTTCTAACGAGCTCCCCTCTTTCCCATTTTGTCTGCCGTGTGGTAGGGGAGGGGTAGGAAACGTATTTGTGGGATGATCATTGGTTGGGGATAACCTCTTTGCTTCCATTTCCCCATATTTATCATTTATGCTTCTTTAAAAATCATTTTGTGTTTGACATTTTTATTTGGTTGGGAAGCTTGGTTTCCTTTTCCTTCAGGTTTAATCGCTCTTTCACTGATAGGAAAGCGACAAATGTCATCTCTTTGTTGTCGTTGGGAGAGTTTAACTTTAGGTGTGGGAGAAAGGATCTGCATGTCTGGAATCTCGACCCTCTGGAGGGATTCTCCTAATTCCTTTTTTTGTTGGCTGTTGGACCCTTCTCCTTTCGTATGTTTTTTTCAGCCCTTTAGAGGATTAAGATTCCTAAGAAGGAGAGATTCTTTACTTGGCAAGTTCTACATGGACATGTGAACACCTTGTATTGGCTCTCGAGGTGGAAGAGGATGTTGTCCTTGGGGCCCTTTTTTGTATTATGTCGAAAGCTGGAAGAAGACCTGGATCACATCCTTTGGAGATGTGAGTTTGCACACTTTGTCTGGAATTTGTTCTTCCAGAAATTTGGTTTTGTGGTTGCCCGTCAAAGGGACATTAGTGTTATGATCGGAAAGTTCCTCCTCCATCGTCCTTTTTGTGAGAAAGGTCATATGCCCTTGTATCTTTTAATATTTTTTCTCAATGAAAGTGCTTGCATTATCTTTTTTTAAAAAAGGTTCTTACTCAATGGAGTTATATTTTTTTTACTCAATAACACTTTGACCTTTGAAACGGTTCAGTTGTTAAATAAATAAATTGTATCAAACCAATATGAGCATATAGATAAAAGGCACTAGTTACCATCTCAAAAGTCGATGGTTTGATTTCTCACTCCACAATTGCTGAACTAAAAGAAAAAAAAAATCGTATCCCTTGAGTCTTGATTGTATATATTCATAAAAAAGGTGTAACTGGTTGATTTGTTATGAGATCAGGTTGTCATCATGAGCTGGCATGAAGCATGAGATGGGGGTTGTGAGGGTGGTTTATCCTTTTGAGATCCCTTGTTGTTTAGTCATGTCAGGATGCTCAGATTTAAGGCTCCAATAGATCCCTCCTACGTGTTATTATTGTTTCTGTAGCACTGGATTGTGACCTATATCTTCTAGGAAGATTAATAGGTTTTTGGAAATAAATTGATAGAATAACTTGAAATCATGTGGTAGAGTTACAAAATATTGTTAATGATTATCTAGTGGGTTTTTAATAAGATTTAATCATAATAATTTAGTTGCTGAATGAACTATTTGTAGAAAAACTATATTTGGGACATACCAAGATTTAATTCCCTCTGAAGTGTCCTTTAGCGTTATGCTTTGACATGATTGCACCACAGACAAAATGGCCTAGAATAAGTGATAAATATTTCATGTGAACTTGTCTGTCATCTTCTCCTGATTAGCGATTTTGTTGATATATTTTTTTTTCTATTGTAGATTTTTTTCTTTCATTAGCCAATAAGACTTTTTCCCCTCCCTAAGAAATCAACAAGAGTTTCTGTTTGAATAGAAGAAAAGTGGTGTCAAGAGGGGAGTGTAATTGTTGATCTGCTTATGTGTAACTGCTATCATAATAGTAGGCTCCTGAGTGCCTCCCATCCCCAGCACTACTTACGTTCTATTGGCAAAATTTCCCAGTCAATGTAGGCTATGCCTTTAGTCAGCTATTATGCAACTATAATTTAAACTTTCCTTGATGATTCTATTTCTAGTTCAATTTTCCCCATATGAAAACTTCTGTTGACTACTCTCCTTAGTTGATTATTATACTCTTTTGGCTTTTAGTGCATCATCTTAGTTAGTATTCCTATCAAATTTTGTAAGTTTCATCAAGCTAGGATTTCAAGACCTTAAATTTCAATTTTCATGTTTACCATAACAGTAGATAAATAGAAGGTTTGGTACTTTGGTTTGATCATTTTCAGTCTACTCTCTAATTTTTGAAACTTCATGGAAGATGCAACATTGTTTTTGCAAAGATTTTGACAGGAGTTACTTATAATATAATTTCATGATATTGTCCATTCCATTTTAGGCAACGACAAGGGTCCTAAGCTCTTGATTCCTGCCAATTTCCGCTGTATATAATTCTTCATAGCGAAGTATTTCGTTGGATGTGATTTTTCAGCTTTCTTGATTCTCATCTATTGGAAGAATTCTAAGTTAATTAATTCAAGACAGCTAAACGCTGGGTAACCATTTGTTAGTTGGTGGGTTTTGGTCTTTTCTGTGTTCCCCATGTTTTCAATGAATGGCTGTGGCATCGACCTTGTTGTCTTCCAGATATTTTTTCTCTATTGTTGCCATGGGTTTTCATTAGGTGACAATTGTCAGCTTGATGATGTACATGACTGAAATTGGCTTTGTGAATTTGCAGACTATACTCAATCCCCTCTACTTGCCTGGATCCCGCATCACATCTTCACATTTCGACACAAAAGTTCGTGCACTCGCAAGGAAGTATCTCTAG

mRNA sequence

ATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAACAATATCCCTATTTATGAAGCTGAAGTCGGATCTGCTGTTAAAAGAGAGGATTCCGCTCAGCTGCATCAGTTTATATTGCATGCGTCCCTTGACATTGTTCAAGACTTGGCATGGACTACTAGTGCCATGTTCTTGAAAGCAGTCGATAGGTTCAATGATTTGGTGGTGTCTGTCTATACTATACTCAATCCCCTCTACTTGCCTGGATCCCGCATCACATCTTCACATTTCGACACAAAAGTTCGTGCACTCGCAAGGAAGTATCTCTAG

Coding sequence (CDS)

ATGGCGACCACAGCTTGTTTCATCATCGTCAGTAGGAACAATATCCCTATTTATGAAGCTGAAGTCGGATCTGCTGTTAAAAGAGAGGATTCCGCTCAGCTGCATCAGTTTATATTGCATGCGTCCCTTGACATTGTTCAAGACTTGGCATGGACTACTAGTGCCATGTTCTTGAAAGCAGTCGATAGGTTCAATGATTTGGTGGTGTCTGTCTATACTATACTCAATCCCCTCTACTTGCCTGGATCCCGCATCACATCTTCACATTTCGACACAAAAGTTCGTGCACTCGCAAGGAAGTATCTCTAG

Protein sequence

MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYTILNPLYLPGSRITSSHFDTKVRALARKYL
Homology
[Close]
BLAST of Lsi10G007870 vs. ExPASy Swiss-Prot
Match: Q9USZ5 (Transport protein particle 20 kDa subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=trs20 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.9e-14
Identity = 43/135 (31.85%), Postives = 70/135 (51.85%), Query Frame = 0 

Query: 4   TACFIIVSRNNIPIYEAEVGSAVKRED---SAQLHQFILHASLDIVQDLAWTTSAMFLKA 63
           TA   I+   + P+YE E+G   ++ D   ++ L+QFI+H+SLDIV  L WT++A ++K 
Sbjct: 2   TAYAAIIGTKDNPVYELEMGPINEKLDRSLNSHLNQFIVHSSLDIVDQLQWTSNAFYMKT 61

Query: 64  VDRFNDLVVSVY---------------------------------TILNPLYLPGSRITS 103
           +D+F+++ +S Y                                 T+++P Y P   I S
Sbjct: 62  IDQFHEMYISAYVTPSNMRFMLLHQNQSADNIKLFFQELHELYIKTLMSPFYQPNQPIRS 121

[Close]
BLAST of Lsi10G007870 vs. ExPASy Swiss-Prot
Match: P0DI81 (Trafficking protein particle complex subunit 2 OS=Homo sapiens OX=9606 GN=TRAPPC2 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.3e-12
Identity = 44/138 (31.88%), Postives = 67/138 (48.55%), Query Frame = 0 

Query: 1   MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYTI---------------------------------LNPLYLPGSR 103
           LK VD+FN+  VS +                                   +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP 120

[Close]
BLAST of Lsi10G007870 vs. ExPASy Swiss-Prot
Match: P0DI82 (Trafficking protein particle complex subunit 2B OS=Homo sapiens OX=9606 GN=TRAPPC2B PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.3e-12
Identity = 44/138 (31.88%), Postives = 67/138 (48.55%), Query Frame = 0 

Query: 1   MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYTI---------------------------------LNPLYLPGSR 103
           LK VD+FN+  VS +                                   +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP 120

[Close]
BLAST of Lsi10G007870 vs. ExPASy Swiss-Prot
Match: Q3T0F2 (Trafficking protein particle complex subunit 2 OS=Bos taurus OX=9913 GN=TRAPPC2 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.3e-12
Identity = 44/138 (31.88%), Postives = 67/138 (48.55%), Query Frame = 0 

Query: 1   MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYT---------------------------------ILNPLYLPGSR 103
           LK VD+FN+  VS +                                   +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

[Close]
BLAST of Lsi10G007870 vs. ExPASy Swiss-Prot
Match: E2QV03 (Trafficking protein particle complex subunit 2 OS=Canis lupus familiaris OX=9615 GN=TRAPPC2 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.3e-12
Identity = 44/138 (31.88%), Postives = 67/138 (48.55%), Query Frame = 0 

Query: 1   MATTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYT---------------------------------ILNPLYLPGSR 103
           LK VD+FN+  VS +                                   +NP Y P S 
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

[Close]
BLAST of Lsi10G007870 vs. ExPASy TrEMBL
Match: A0A6J1I1U1 (transport protein particle 20 kDa subunit isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469735 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.9e-43
Identity = 101/135 (74.81%), Postives = 101/135 (74.81%), Query Frame = 0 

Query: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVY---------------------------------TILNPLYLPGSRITS 103
           VDRFNDLVVSVY                                 TILNPLYLPGSRITS
Sbjct: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITS 120

[Close]
BLAST of Lsi10G007870 vs. ExPASy TrEMBL
Match: A0A6J1G7X4 (transport protein particle 20 kDa subunit isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451547 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.9e-43
Identity = 101/135 (74.81%), Postives = 101/135 (74.81%), Query Frame = 0 

Query: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVY---------------------------------TILNPLYLPGSRITS 103
           VDRFNDLVVSVY                                 TILNPLYLPGSRITS
Sbjct: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITS 120

[Close]
BLAST of Lsi10G007870 vs. ExPASy TrEMBL
Match: A0A1S3CCU2 (trafficking protein particle complex subunit 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499581 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 6.5e-43
Identity = 101/135 (74.81%), Postives = 101/135 (74.81%), Query Frame = 0 

Query: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MA TACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVY---------------------------------TILNPLYLPGSRITS 103
           VDRFNDLVVSVY                                 TILNPLYLPGSRITS
Sbjct: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITS 120

[Close]
BLAST of Lsi10G007870 vs. ExPASy TrEMBL
Match: A0A1S4E319 (trafficking protein particle complex subunit 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499581 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 8.4e-43
Identity = 101/136 (74.26%), Postives = 101/136 (74.26%), Query Frame = 0 

Query: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MA TACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVY----------------------------------TILNPLYLPGSRIT 103
           VDRFNDLVVSVY                                  TILNPLYLPGSRIT
Sbjct: 61  VDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120

[Close]
BLAST of Lsi10G007870 vs. ExPASy TrEMBL
Match: A0A445C1A0 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g040993 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.4e-42
Identity = 92/102 (90.20%), Postives = 98/102 (96.08%), Query Frame = 0 

Query: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRN+IPIYEAEVG A KRED+AQLHQFILHA+LDIVQDLAWTTSAM+LK+
Sbjct: 24  MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALDIVQDLAWTTSAMYLKS 83

Query: 61  VDRFNDLVVSVYTILNPLYLPGSRITSSHFDTKVRALARKYL 103
           VDRFNDLVVS  T+LNPLYLPGSRITSSHFDTKVRALARKYL
Sbjct: 84  VDRFNDLVVS--TLLNPLYLPGSRITSSHFDTKVRALARKYL 123

[Close]
BLAST of Lsi10G007870 vs. NCBI nr
Match: KAG2302278.1 (hypothetical protein Bca52824_030929 [Brassica carinata])

HSP 1 Score: 186.0 bits (471), Expect = 1.6e-43
Identity = 90/102 (88.24%), Postives = 99/102 (97.06%), Query Frame = 0 

Query: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MA TACF+IV+RN+IPIYEAEVGSA KRED+AQLHQFILHA+LD+VQDLAWTTSAMFLK+
Sbjct: 1   MANTACFMIVARNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKS 60

Query: 61  VDRFNDLVVSVYTILNPLYLPGSRITSSHFDTKVRALARKYL 103
           VDRFNDLVVSVY +LNPLYLPGSRITS+HFDTKVRALARKYL
Sbjct: 61  VDRFNDLVVSVYILLNPLYLPGSRITSTHFDTKVRALARKYL 102

[Close]
BLAST of Lsi10G007870 vs. NCBI nr
Match: XP_038900562.1 (transport protein particle 20 kDa subunit [Benincasa hispida])

HSP 1 Score: 184.9 bits (468), Expect = 3.5e-43
Identity = 102/135 (75.56%), Postives = 102/135 (75.56%), Query Frame = 0 

Query: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVY---------------------------------TILNPLYLPGSRITS 103
           VDRFNDLVVSVY                                 TILNPLYLPGSRITS
Sbjct: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITS 120

[Close]
BLAST of Lsi10G007870 vs. NCBI nr
Match: XP_004147330.1 (transport protein particle 20 kDa subunit [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 4.6e-43
Identity = 101/135 (74.81%), Postives = 102/135 (75.56%), Query Frame = 0 

Query: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVY---------------------------------TILNPLYLPGSRITS 103
           VDRFNDLVVSVY                                 TILNPLYLPGSR+TS
Sbjct: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVTS 120

[Close]
BLAST of Lsi10G007870 vs. NCBI nr
Match: XP_022947789.1 (transport protein particle 20 kDa subunit isoform X2 [Cucurbita moschata] >XP_022970901.1 transport protein particle 20 kDa subunit isoform X2 [Cucurbita maxima] >XP_023534751.1 transport protein particle 20 kDa subunit [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.3 bits (464), Expect = 1.0e-42
Identity = 101/135 (74.81%), Postives = 101/135 (74.81%), Query Frame = 0 

Query: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVY---------------------------------TILNPLYLPGSRITS 103
           VDRFNDLVVSVY                                 TILNPLYLPGSRITS
Sbjct: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITS 120

[Close]
BLAST of Lsi10G007870 vs. NCBI nr
Match: KAG6604699.1 (Trafficking protein particle complex subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 183.0 bits (463), Expect = 1.3e-42
Identity = 101/136 (74.26%), Postives = 101/136 (74.26%), Query Frame = 0 

Query: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MATTACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVY----------------------------------TILNPLYLPGSRIT 103
           VDRFNDLVVSVY                                  TILNPLYLPGSRIT
Sbjct: 61  VDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120

[Close]
BLAST of Lsi10G007870 vs. TAIR 10
Match: AT1G80500.1 (SNARE-like superfamily protein )

HSP 1 Score: 132.1 bits (331), Expect = 2.5e-31
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 0 

Query: 1  MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
          MA TACFIIV RN+IPIYEAEVGSA KRED+AQLHQFILHA+LD+VQDLAWTTSAMFLK+
Sbjct: 1  MANTACFIIVGRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKS 60

Query: 61 VDRFNDLVVSVY 73
          VDRFNDLVVSVY
Sbjct: 61 VDRFNDLVVSVY 72


HSP 2 Score: 61.2 bits (147), Expect = 5.5e-10
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 74  ILNPLYLPGSRITSSHFDTKVRALARKYL 103
           +LNPLYLPGSRITSSHFDTKVRALARKYL
Sbjct: 107 LLNPLYLPGSRITSSHFDTKVRALARKYL 135

The following BLAST results are available for this feature:
BLAST of Lsi10G007870 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9USZ57.9e-1431.85Transport protein particle 20 kDa subunit OS=Schizosaccharomyces pombe (strain 9... [more]
P0DI813.3e-1231.88Trafficking protein particle complex subunit 2 OS=Homo sapiens OX=9606 GN=TRAPPC... [more]
P0DI823.3e-1231.88Trafficking protein particle complex subunit 2B OS=Homo sapiens OX=9606 GN=TRAPP... [more]
Q3T0F23.3e-1231.88Trafficking protein particle complex subunit 2 OS=Bos taurus OX=9913 GN=TRAPPC2 ... [more]
E2QV033.3e-1231.88Trafficking protein particle complex subunit 2 OS=Canis lupus familiaris OX=9615... [more]
BLAST of Lsi10G007870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I1U14.9e-4374.81transport protein particle 20 kDa subunit isoform X2 OS=Cucurbita maxima OX=3661... [more]
A0A6J1G7X44.9e-4374.81transport protein particle 20 kDa subunit isoform X2 OS=Cucurbita moschata OX=36... [more]
A0A1S3CCU26.5e-4374.81trafficking protein particle complex subunit 2 isoform X2 OS=Cucumis melo OX=365... [more]
A0A1S4E3198.4e-4374.26trafficking protein particle complex subunit 2 isoform X1 OS=Cucumis melo OX=365... [more]
A0A445C1A01.4e-4290.20Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g040993 PE=4 SV=1[more]
BLAST of Lsi10G007870 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG2302278.11.6e-4388.24hypothetical protein Bca52824_030929 [Brassica carinata][more]
XP_038900562.13.5e-4375.56transport protein particle 20 kDa subunit [Benincasa hispida][more]
XP_004147330.14.6e-4374.81transport protein particle 20 kDa subunit [Cucumis sativus][more]
XP_022947789.11.0e-4274.81transport protein particle 20 kDa subunit isoform X2 [Cucurbita moschata] >XP_02... [more]
KAG6604699.11.3e-4274.26Trafficking protein particle complex subunit 2, partial [Cucurbita argyrosperma ... [more]
BLAST of Lsi10G007870 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G80500.12.5e-3188.89SNARE-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006722Trafficking protein particle complex subunit 2PFAMPF04628Sedlin_Ncoord: 9..72
e-value: 1.3E-17
score: 64.1
IPR006722Trafficking protein particle complex subunit 2PANTHERPTHR12403TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2coord: 74..102
IPR006722Trafficking protein particle complex subunit 2PANTHERPTHR12403TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2coord: 1..73
NoneNo IPR availableGENE3D3.30.450.70coord: 74..102
e-value: 1.2E-7
score: 33.9
coord: 1..73
e-value: 3.9E-25
score: 90.6
NoneNo IPR availablePANTHERPTHR12403:SF27SNARE-LIKE SUPERFAMILY PROTEINcoord: 74..102
NoneNo IPR availablePANTHERPTHR12403:SF27SNARE-LIKE SUPERFAMILY PROTEINcoord: 1..73
NoneNo IPR availableCDDcd14825TRAPPC2_sedlincoord: 4..102
e-value: 3.35037E-41
score: 130.342
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G007870.1Lsi10G007870.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
cellular_component GO:0005737 cytoplasm