Lsi10G007550 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AATGTATCTTCTTACATTTCAAGCTCTTATTGGAACAACTCTTCAGGTATTGCGATTTATGACTAGTTTTTCTTAGTATCCAAGAAGAGGACAAAAGCTAACACGATTATCAAATGGATCCTAATACGTCACAGTCACTGTACTTTTGTAGCTCAATAGATGAAGATGCTGAAGTTATAAGTCCTCGATGTGTTCACCTATGTAGGTTTTGGCTGGTCTTTTGAATACAACAACTGGTGCAGTATACGTCAAGAAGCCAAAGTGCTTTGTCTTCCAAAACCCGGACTATCAGGTTACCTTCATCGTTTTAACCTTCAGTTGGTATATGATAACATTGCAGCTGGATTTAGCACCTTGAAAGAGAATTTGCTGTTATGGCAAAGCTCCTCTTTTTAAGTAATATTTGTTGTTTTAACTATGCCTCTTGCACTTGAAGTAATTGTTGGTTTATTTTGACGAAGTTGGTTTTGCATCAGAGCCTTTAGCTGTGAAAGTTATTATGTTAGTTACTACTAACTAGCTATTGGCAGCTCATCCATCCTCTAGAGGATTTCTGTATTCTATTTCTGAAATTATTTTCAAAATTTAATGCCAGTGCAGTGGTTTGAAGAATGGACGTTGTGAGAAAAAGCATTGAAAAAGTAGGGTGTGAACTCTGTAATTATGAGATATGAATGCAAGAAACACATGACTGATAGCTCACTCTAACATGATTAATTTCATCTTTGGATCAAAATGCAAAACATATTTAATATTAGCTAATTACCAATAAAGTTTAGCTTAATTACAAATTTAGCCTCAGGCCTTGAACTTTGATGGTGAGTTGTGTCTAGTTCCTAGACTATATAAGTTCCAATTACATTTATGAACTTTCAATTTGATTTGAATTCATTCTTATTGTTGACATTGTTACTTAAATGTTGATGTGGCATGTTGACTGGACAATGGAGTAATCATTTAACATGTTGTGGCAGCAAGTAGCATGGGAGAGTGGACTAGTTGGATAAAATAAGAGTGAGCGGGTCGATTTTTTTTTATTTATAGCTTGCCCGTCCCACCAGATGTTTATGTCATTTACCCCCCTTTTTATATAGTTGATATATTCCCTTGTGTCACATCATTACAAATCATGACGTGTTAGTCTAATTGGTAACTTATGTTAATATTTTATTAACAATGTTAATGGTATGAACTTATTAAATCAATAACAAAATTTTAGGGATATAATTGAAGCTTTTGATAGATTAGTGTTAAAACGACTGGATTTAAGGACTAGATTTGAAATTTGACCTAAAATATAAAGATGGTAAACAAACAGAAAAAGCGAACTTGCCAGCTTTTGAAAATCTATTGAATTTCAAACATGCATATGGCATTCTTGCAAACCAACAAGTCGTACTGATTTTCAGCTTTCTTGTTGCTTGTATTGTTGTAAATTATAATAAACATTTGATGCAAATAATTCTTTGGTTTGCCAGGTAGTGATGCCTACTGTGGAAGCTGATGTTGCATTTGGCCTCGGTAAGTTGAATCTGACCAATGATGAAGTTAAATCAAGGGTTTTGGAAGCACTGACTGCAGTTGGCATGTCCAGCTACCTTCAGGCAAGCCATATATATTTGTAGTTAATCAAAATTGGAAGTTGTAAAGAACTGCAGAATTTAGTTTGAAAATTCTTATTCTTGTTCCTCAGAGATCCGTCCAAACGCTGAGTGGTGGTCAGAAGCAAAGAGTTGCCATCGCTGGTGCTTTGGCTGAAGCATGTAAAGTGCTTCTATTAGATGAACTGACCACATTTCTGGATGAGAAAGATCAGGTATTTGATATCATATAAGCAGACTTTATGAATCTTCATCACATAATCGCAATGGTAGAATTTGACATGCTGTGCTGATTATTGCAAACAAATCTGATCTCTACCCACTCCCTAGGTGGCCTATGTTATAGGGCTTGGAATGATCAGAGATATCCTTCAAAATCTGGTTCATGCCTTTAGGTTGAAAATTTAAGCCCCGTTTGGTAACCTATTTCCTCTCAATTTCTTACCATGCTTGACATCTTTCTTTAAGTAAAAGAGGTGAATTAAATTCTTAGCTAAATTCCAAATAAAAACAAGTTTCTAAAAACTTTTTTCTTTTTTTTAGTTTTAAAAACATAGCTTAGTTCTCGAAAACATTGGTAAAGAGTAGGCAACAAAGCAAAAAATATAGAGGTGGAAATGGTGGATGGACTTAATTTTCAAAAACTAAAAATAAAAAACCAAATGATTGTCAAACGGGACTTTAATAATTAAAACTTTTATTCTCTTCCGAAGGTGACTTTAGATAAGCGAAGCATTTCTAGGGTAGGGTAGGCCATGAGCATGATGCAAAAAGGGGTGTCCTCGATACCCAAAAAAACGAGAGAAAACAAAACTTTGGAAAATGTTGTTTCAATCCTAGAAATGAATAGGCTTCTTTATAATTCTAGCAAACTTGGAATCTTGACTGATTTTTGCTGCTGGATATTAGCAGTTTGATAAGGACTACAATAGCCTTTTTATGCACAATTTTAGTTCTTACAATTTTATTTCTTTCTCCTTTTTCACCCTTTTCTTTTCTAAATCAGATGGGGGTGATCAAAGCAGTTAGGAATTCTTTGCACAATTCTGAAGATGTTACAGCATTATGGGTGACCCATCGCTTAGAAGAACTCGAGTATGCAGATGGCGCTATCTACATGGAAGGCGGGAAAGTCGTCATGCATGGTGATGTG AATGTATCTTCTTACATTTCAAGCTCTTATTGGAACAACTCTTCAGGTTTTGGCTGGTCTTTTGAATACAACAACTGGTGCAGTATACGTCAAGAAGCCAAAGTGCTTTGTCTTCCAAAACCCGGACTATCAGGTAGTGATGCCTACTGTGGAAGCTGATGTTGCATTTGGCCTCGGTAAGTTGAATCTGACCAATGATGAAGTTAAATCAAGGGTTTTGGAAGCACTGACTGCAAGATCCGTCCAAACGCTGAGTGGTGGTCAGAAGCAAAGAGTTGCCATCGCTGGTGCTTTGGCTGAAGCATGTAAAGTGCTTCTATTAGATGAACTGACCACATTTCTGGATGAGAAAGATCAGATGGGGGTGATCAAAGCAGTTAGGAATTCTTTGCACAATTCTGAAGATGTTACAGCATTATGGGTGACCCATCGCTTAGAAGAACTCGAGTATGCAGATGGCGCTATCTACATGGAAGGCGGGAAAGTCGTCATGCATGGTGATGTG ATGTATCTTCTTACATTTCAAGCTCTTATTGGAACAACTCTTCAGGTTTTGGCTGGTCTTTTGAATACAACAACTGGTGCAGTATACGTCAAGAAGCCAAAGTGCTTTGTCTTCCAAAACCCGGACTATCAGGTAGTGATGCCTACTGTGGAAGCTGATGTTGCATTTGGCCTCGGTAAGTTGAATCTGACCAATGATGAAGTTAAATCAAGGGTTTTGGAAGCACTGACTGCAAGATCCGTCCAAACGCTGAGTGGTGGTCAGAAGCAAAGAGTTGCCATCGCTGGTGCTTTGGCTGAAGCATGTAAAGTGCTTCTATTAGATGAACTGACCACATTTCTGGATGAGAAAGATCAGATGGGGGTGATCAAAGCAGTTAGGAATTCTTTGCACAATTCTGAAGATGTTACAGCATTATGGGTGACCCATCGCTTAGAAGAACTCGAGTATGCAGATGGCGCTATCTACATGGAAGGCGGGAAAGTCGTCATGCATGGTGATGTG MYLLTFQALIGTTLQVLAGLLNTTTGAVYVKKPKCFVFQNPDYQVVMPTVEADVAFGLGKLNLTNDEVKSRVLEALTARSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDEKDQMGVIKAVRNSLHNSEDVTALWVTHRLEELEYADGAIYMEGGKVVMHGDV Homology
BLAST of Lsi10G007550 vs. ExPASy Swiss-Prot
Match: Q8H1R4 (ABC transporter I family member 10 OS=Arabidopsis thaliana OX=3702 GN=ABCI10 PE=1 SV=1) HSP 1 Score: 223.8 bits (569), Expect = 1.5e-57 Identity = 117/166 (70.48%), Postives = 141/166 (84.94%), Query Frame = 0
BLAST of Lsi10G007550 vs. ExPASy Swiss-Prot
Match: Q1J982 (Energy-coupling factor transporter ATP-binding protein EcfA1 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) OX=370553 GN=ecfA1 PE=3 SV=2) HSP 1 Score: 105.9 bits (263), Expect = 4.5e-22 Identity = 66/172 (38.37%), Postives = 100/172 (58.14%), Query Frame = 0
BLAST of Lsi10G007550 vs. ExPASy Swiss-Prot
Match: P0C0E8 (Energy-coupling factor transporter ATP-binding protein EcfA1 OS=Streptococcus pyogenes serotype M1 OX=301447 GN=ecfA1 PE=3 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 5.8e-22 Identity = 65/172 (37.79%), Postives = 100/172 (58.14%), Query Frame = 0
BLAST of Lsi10G007550 vs. ExPASy Swiss-Prot
Match: P0CZ28 (Energy-coupling factor transporter ATP-binding protein EcfA1 OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) OX=198466 GN=ecfA1 PE=3 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 5.8e-22 Identity = 65/172 (37.79%), Postives = 100/172 (58.14%), Query Frame = 0
BLAST of Lsi10G007550 vs. ExPASy Swiss-Prot
Match: Q5X9B5 (Energy-coupling factor transporter ATP-binding protein EcfA1 OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) OX=286636 GN=ecfA1 PE=3 SV=2) HSP 1 Score: 105.5 bits (262), Expect = 5.8e-22 Identity = 65/172 (37.79%), Postives = 100/172 (58.14%), Query Frame = 0
BLAST of Lsi10G007550 vs. ExPASy TrEMBL
Match: A0A1S3CEL1 (ABC transporter I family member 10, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499613 PE=4 SV=1) HSP 1 Score: 303.9 bits (777), Expect = 4.1e-79 Identity = 160/173 (92.49%), Postives = 163/173 (94.22%), Query Frame = 0
BLAST of Lsi10G007550 vs. ExPASy TrEMBL
Match: A0A6J1DVP5 (ABC transporter I family member 10, chloroplastic isoform X3 OS=Momordica charantia OX=3673 GN=LOC111023532 PE=4 SV=1) HSP 1 Score: 288.9 bits (738), Expect = 1.4e-74 Identity = 151/165 (91.52%), Postives = 155/165 (93.94%), Query Frame = 0
BLAST of Lsi10G007550 vs. ExPASy TrEMBL
Match: A0A6J1DRA1 (ABC transporter I family member 10, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023532 PE=4 SV=1) HSP 1 Score: 288.9 bits (738), Expect = 1.4e-74 Identity = 151/165 (91.52%), Postives = 155/165 (93.94%), Query Frame = 0
BLAST of Lsi10G007550 vs. ExPASy TrEMBL
Match: A0A6J1DSL5 (ABC transporter I family member 10, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023532 PE=4 SV=1) HSP 1 Score: 288.9 bits (738), Expect = 1.4e-74 Identity = 151/165 (91.52%), Postives = 155/165 (93.94%), Query Frame = 0
BLAST of Lsi10G007550 vs. ExPASy TrEMBL
Match: A0A1S4E2Z9 (ABC transporter I family member 10, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499613 PE=4 SV=1) HSP 1 Score: 287.0 bits (733), Expect = 5.2e-74 Identity = 150/165 (90.91%), Postives = 154/165 (93.33%), Query Frame = 0
BLAST of Lsi10G007550 vs. NCBI nr
Match: XP_008460866.1 (PREDICTED: ABC transporter I family member 10, chloroplastic isoform X2 [Cucumis melo]) HSP 1 Score: 303.9 bits (777), Expect = 8.5e-79 Identity = 160/173 (92.49%), Postives = 163/173 (94.22%), Query Frame = 0
BLAST of Lsi10G007550 vs. NCBI nr
Match: XP_022156682.1 (ABC transporter I family member 10, chloroplastic isoform X1 [Momordica charantia]) HSP 1 Score: 288.9 bits (738), Expect = 2.8e-74 Identity = 151/165 (91.52%), Postives = 155/165 (93.94%), Query Frame = 0
BLAST of Lsi10G007550 vs. NCBI nr
Match: XP_022156685.1 (ABC transporter I family member 10, chloroplastic isoform X3 [Momordica charantia] >XP_022156686.1 ABC transporter I family member 10, chloroplastic isoform X3 [Momordica charantia] >XP_022156687.1 ABC transporter I family member 10, chloroplastic isoform X3 [Momordica charantia]) HSP 1 Score: 288.9 bits (738), Expect = 2.8e-74 Identity = 151/165 (91.52%), Postives = 155/165 (93.94%), Query Frame = 0
BLAST of Lsi10G007550 vs. NCBI nr
Match: XP_022156683.1 (ABC transporter I family member 10, chloroplastic isoform X2 [Momordica charantia]) HSP 1 Score: 288.9 bits (738), Expect = 2.8e-74 Identity = 151/165 (91.52%), Postives = 155/165 (93.94%), Query Frame = 0
BLAST of Lsi10G007550 vs. NCBI nr
Match: XP_008460865.1 (PREDICTED: ABC transporter I family member 10, chloroplastic isoform X1 [Cucumis melo] >XP_016902606.1 PREDICTED: ABC transporter I family member 10, chloroplastic isoform X1 [Cucumis melo]) HSP 1 Score: 287.0 bits (733), Expect = 1.1e-73 Identity = 150/165 (90.91%), Postives = 154/165 (93.33%), Query Frame = 0
BLAST of Lsi10G007550 vs. TAIR 10
Match: AT4G33460.1 (ABC transporter family protein ) HSP 1 Score: 223.8 bits (569), Expect = 1.0e-58 Identity = 117/166 (70.48%), Postives = 141/166 (84.94%), Query Frame = 0
BLAST of Lsi10G007550 vs. TAIR 10
Match: AT4G28620.1 (ABC transporter of the mitochondrion 2 ) HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09 Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 0
BLAST of Lsi10G007550 vs. TAIR 10
Match: AT4G28630.1 (ABC transporter of the mitochondrion 1 ) HSP 1 Score: 60.5 bits (145), Expect = 1.5e-09 Identity = 35/83 (42.17%), Postives = 47/83 (56.63%), Query Frame = 0
BLAST of Lsi10G007550 vs. TAIR 10
Match: AT4G18050.1 (P-glycoprotein 9 ) HSP 1 Score: 60.1 bits (144), Expect = 2.0e-09 Identity = 44/133 (33.08%), Postives = 70/133 (52.63%), Query Frame = 0
BLAST of Lsi10G007550 vs. TAIR 10
Match: AT4G01820.1 (P-glycoprotein 3 ) HSP 1 Score: 59.7 bits (143), Expect = 2.6e-09 Identity = 43/125 (34.40%), Postives = 63/125 (50.40%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|