Lsi10G007520 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G007520
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr10: 10349803 .. 10350276 (-)
RNA-Seq Expression	Lsi10G007520
Synteny	Lsi10G007520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTGGTGAATCCCTCAGCTGGACGTGCATTCATATGGATCGTCACTTGCTTTCTCTTCTTCTCCATTCTCAGCGGCGGCGGTTGTCTTTTGATGTACATGATCCTCCCTGAGACCGAAACCACCGCCTGGCTACCCGTCGCCGGTTTGTCCTTGGTCTGTCTCCCTTGGTTCTTCTGGATCTTAACTTTCTTCTATAGAGTCATCTCACGTGCATGTGGTTTTAGAGTCTCCCTTGGTATTGGTGTCGATGTAGGTGCAAATAACGCGAATGCCAATAATAATAATAATAATAATAATAATAATAATAATAATAATGCATCTGCTGAATCCCCTCGACACGATGTGGGAGATCGAGCTGATGAGGAGGATGGTGACAATGGTGATCAAAGGCAAAGCACTTCGTCCTCCAACAACTCGGTAGCGTCTCGTGAGAGTGAAATGCCATTAGCCATAACAATGGGGTCGTAA

mRNA sequence

ATGTCTTTGGTGAATCCCTCAGCTGGACGTGCATTCATATGGATCGTCACTTGCTTTCTCTTCTTCTCCATTCTCAGCGGCGGCGGTTGTCTTTTGATGTACATGATCCTCCCTGAGACCGAAACCACCGCCTGGCTACCCGTCGCCGGTTTGTCCTTGGTCTGTCTCCCTTGGTTCTTCTGGATCTTAACTTTCTTCTATAGAGTCATCTCACGTGCATGTGGTTTTAGAGTCTCCCTTGGTATTGGTGTCGATGTAGGTGCAAATAACGCGAATGCCAATAATAATAATAATAATAATAATAATAATAATAATAATAATGCATCTGCTGAATCCCCTCGACACGATGTGGGAGATCGAGCTGATGAGGAGGATGGTGACAATGGTGATCAAAGGCAAAGCACTTCGTCCTCCAACAACTCGGTAGCGTCTCGTGAGAGTGAAATGCCATTAGCCATAACAATGGGGTCGTAA

Coding sequence (CDS)

ATGTCTTTGGTGAATCCCTCAGCTGGACGTGCATTCATATGGATCGTCACTTGCTTTCTCTTCTTCTCCATTCTCAGCGGCGGCGGTTGTCTTTTGATGTACATGATCCTCCCTGAGACCGAAACCACCGCCTGGCTACCCGTCGCCGGTTTGTCCTTGGTCTGTCTCCCTTGGTTCTTCTGGATCTTAACTTTCTTCTATAGAGTCATCTCACGTGCATGTGGTTTTAGAGTCTCCCTTGGTATTGGTGTCGATGTAGGTGCAAATAACGCGAATGCCAATAATAATAATAATAATAATAATAATAATAATAATAATAATGCATCTGCTGAATCCCCTCGACACGATGTGGGAGATCGAGCTGATGAGGAGGATGGTGACAATGGTGATCAAAGGCAAAGCACTTCGTCCTCCAACAACTCGGTAGCGTCTCGTGAGAGTGAAATGCCATTAGCCATAACAATGGGGTCGTAA

Protein sequence

MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFFWILTFFYRVISRACGFRVSLGIGVDVGANNANANNNNNNNNNNNNNNASAESPRHDVGDRADEEDGDNGDQRQSTSSSNNSVASRESEMPLAITMGS

Homology

[Close]

BLAST of Lsi10G007520 vs. ExPASy TrEMBL
Match: A0A0A0LJX6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G336080 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 3.8e-58
Identity = 128/157 (81.53%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
           MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLP+ GLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60

Query: 61  WILTFFYRVISRACGFRVSLGIGVDVGANNANANNNNNNNNNNNNNNASAESPRHDVGDR 120
           W+LTFFYRV+SRACGFRVSLGIG DV +NNANA      NNNNNNN +SAES + DVG+R
Sbjct: 61  WLLTFFYRVLSRACGFRVSLGIGADVSSNNANA------NNNNNNNASSAESAQQDVGER 120

Query: 121 ADEEDGDNGDQRQSTSSSNNSVASRESEMPLAITMGS 158
            D ED +N DQR S SSSNNS+ SRESEMPLAITM S
Sbjct: 121 -DNEDNNNADQRHSNSSSNNSIVSRESEMPLAITMAS 150

[Close]

BLAST of Lsi10G007520 vs. ExPASy TrEMBL
Match: A0A5A7TCV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00470 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 2.1e-56
Identity = 124/157 (78.98%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
           MSLVNPSAGRAFIWIVTCFLFFSI+SGGGCLLMYMILPE+E+T WLP+ GLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSIISGGGCLLMYMILPESESTEWLPITGLSLVCLPWFF 60

Query: 61  WILTFFYRVISRACGFRVSLGIGVDVGANNANANNNNNNNNNNNNNNASAESPRHDVGDR 120
           W+LTFFYRVISRACG+RVSLG G DVG NN      N+NNNNNNNN +SAESPR DVG+R
Sbjct: 61  WLLTFFYRVISRACGYRVSLGTGADVGTNNV-----NDNNNNNNNNASSAESPRQDVGER 120

Query: 121 ADEEDGDNGDQRQSTSSSNNSVASRESEMPLAITMGS 158
            + ED +N DQR+S SSSNNS+ SRESEMPLAITM S
Sbjct: 121 GN-EDNNNVDQRKSNSSSNNSIVSRESEMPLAITMAS 151

[Close]

BLAST of Lsi10G007520 vs. ExPASy TrEMBL
Match: A0A1S3CDW9 (Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103499619 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.5e-56
Identity = 124/157 (78.98%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
           MSLVNPSAGRAFIWIVTCFLFFSI+SGGGCLLMYMILPE+E+T WLP+ GLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSIISGGGCLLMYMILPESESTEWLPITGLSLVCLPWFF 60

Query: 61  WILTFFYRVISRACGFRVSLGIGVDVGANNANANNNNNNNNNNNNNNASAESPRHDVGDR 120
           W+LTFFYRVISRACG+RVSLG G DVG NN      N+NNNNNNNN +SAESPR DVG+R
Sbjct: 61  WLLTFFYRVISRACGYRVSLGTGEDVGTNNV-----NDNNNNNNNNASSAESPRQDVGER 120

Query: 121 ADEEDGDNGDQRQSTSSSNNSVASRESEMPLAITMGS 158
            + ED +N DQR+S SSSNNS+ SRESEMPLAITM S
Sbjct: 121 GN-EDNNNVDQRKSNSSSNNSIVSRESEMPLAITMAS 151

[Close]

BLAST of Lsi10G007520 vs. ExPASy TrEMBL
Match: A0A6J1D6I2 (uncharacterized protein LOC111017503 OS=Momordica charantia OX=3673 GN=LOC111017503 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 4.0e-44
Identity = 112/161 (69.57%), Postives = 120/161 (74.53%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
           MSLV+PS GRAFIWI+T FLFF ILSGGGCL+MYMILPETETTAWLP+ GLSLVCLPWFF
Sbjct: 1   MSLVDPSTGRAFIWIITVFLFFCILSGGGCLVMYMILPETETTAWLPMVGLSLVCLPWFF 60

Query: 61  WILTFFYRVISRACGFRVSLGIG-VDVGANNANANNNNNNNNNNNNNNASAESPRHDVGD 120
           WILTFFYRVISRACGFRVSLG+G VD GA  A               NAS+ESP    G 
Sbjct: 61  WILTFFYRVISRACGFRVSLGVGVVDGGAGVA---------------NASSESP-XGPGI 120

Query: 121 RADEEDGDNG---DQRQSTSSSNNSVASRESEMPLAITMGS 158
             D+EDG  G    +R STSSS NS  SRESEMPLAITM S
Sbjct: 121 DNDDEDGHGGLGDQKRNSTSSSRNSAVSRESEMPLAITMAS 145

[Close]

BLAST of Lsi10G007520 vs. ExPASy TrEMBL
Match: A0A6J1EV39 (uncharacterized protein LOC111438319 OS=Cucurbita moschata OX=3662 GN=LOC111438319 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 5.3e-44
Identity = 109/157 (69.43%), Postives = 127/157 (80.89%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
           MSLV+PSAGRAF+W V   LF  ILSGG CLL+Y+ILPETE+TAWLPVAGLSLVCLPWFF
Sbjct: 1   MSLVDPSAGRAFVWFVFFSLFLCILSGGACLLVYIILPETESTAWLPVAGLSLVCLPWFF 60

Query: 61  WILTFFYRVISRACGFRVSLGIGVDVGANNANANNNNNNNNNNNNNNASAESPRHDVGDR 120
           WILTFFYRVISRACGFRVSL +        A + N+ N+++NNNNNN+S ESPR D   +
Sbjct: 61  WILTFFYRVISRACGFRVSLAM--------ATSANDTNDDDNNNNNNSSGESPRCDARAQ 120

Query: 121 ADEEDGDNGDQRQSTSSSNNSVASRESEMPLAITMGS 158
           A EEDG+N DQR+S  SSNNS+ SRESE+P AI+MGS
Sbjct: 121 A-EEDGNNDDQRRSNLSSNNSIMSRESEIPFAISMGS 148

[Close]

BLAST of Lsi10G007520 vs. NCBI nr
Match: XP_038900833.1 (uncharacterized protein LOC120087896 [Benincasa hispida])

HSP 1 Score: 264.2 bits (674), Expect = 7.0e-67
Identity = 141/157 (89.81%), Postives = 147/157 (93.63%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
           MSLVNPSAGRAFIWIVTCFLFFSI+SGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSIISGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60

Query: 61  WILTFFYRVISRACGFRVSLGIGVDVGANNANANNNNNNNNNNNNNNASAESPRHDVGDR 120
           W+LTFFYRVISRACGFRVS+GIGVDVGA+NANA      NNNNNNNNASAESPRHD GDR
Sbjct: 61  WLLTFFYRVISRACGFRVSIGIGVDVGADNANA------NNNNNNNNASAESPRHDGGDR 120

Query: 121 ADEEDGDNGDQRQSTSSSNNSVASRESEMPLAITMGS 158
            DEED DNGDQR+S SSSNNS+ASRESEMPLAITMGS
Sbjct: 121 VDEEDDDNGDQRRSNSSSNNSIASRESEMPLAITMGS 151

[Close]

BLAST of Lsi10G007520 vs. NCBI nr
Match: XP_011649431.1 (putative uncharacterized protein DDB_G0284715 [Cucumis sativus])

HSP 1 Score: 234.2 bits (596), Expect = 7.8e-58
Identity = 128/157 (81.53%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
           MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLP+ GLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60

Query: 61  WILTFFYRVISRACGFRVSLGIGVDVGANNANANNNNNNNNNNNNNNASAESPRHDVGDR 120
           W+LTFFYRV+SRACGFRVSLGIG DV +NNANA      NNNNNNN +SAES + DVG+R
Sbjct: 61  WLLTFFYRVLSRACGFRVSLGIGADVSSNNANA------NNNNNNNASSAESAQQDVGER 120

Query: 121 ADEEDGDNGDQRQSTSSSNNSVASRESEMPLAITMGS 158
            D ED +N DQR S SSSNNS+ SRESEMPLAITM S
Sbjct: 121 -DNEDNNNADQRHSNSSSNNSIVSRESEMPLAITMAS 150

[Close]

BLAST of Lsi10G007520 vs. NCBI nr
Match: KAA0040748.1 (hypothetical protein E6C27_scaffold703G00110 [Cucumis melo var. makuwa] >TYK02064.1 hypothetical protein E5676_scaffold680G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 228.4 bits (581), Expect = 4.3e-56
Identity = 124/157 (78.98%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
           MSLVNPSAGRAFIWIVTCFLFFSI+SGGGCLLMYMILPE+E+T WLP+ GLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSIISGGGCLLMYMILPESESTEWLPITGLSLVCLPWFF 60

Query: 61  WILTFFYRVISRACGFRVSLGIGVDVGANNANANNNNNNNNNNNNNNASAESPRHDVGDR 120
           W+LTFFYRVISRACG+RVSLG G DVG NN      N+NNNNNNNN +SAESPR DVG+R
Sbjct: 61  WLLTFFYRVISRACGYRVSLGTGADVGTNNV-----NDNNNNNNNNASSAESPRQDVGER 120

Query: 121 ADEEDGDNGDQRQSTSSSNNSVASRESEMPLAITMGS 158
            + ED +N DQR+S SSSNNS+ SRESEMPLAITM S
Sbjct: 121 GN-EDNNNVDQRKSNSSSNNSIVSRESEMPLAITMAS 151

[Close]

BLAST of Lsi10G007520 vs. NCBI nr
Match: XP_008460874.1 (PREDICTED: putative uncharacterized protein DDB_G0283431 [Cucumis melo])

HSP 1 Score: 227.6 bits (579), Expect = 7.3e-56
Identity = 124/157 (78.98%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
           MSLVNPSAGRAFIWIVTCFLFFSI+SGGGCLLMYMILPE+E+T WLP+ GLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSIISGGGCLLMYMILPESESTEWLPITGLSLVCLPWFF 60

Query: 61  WILTFFYRVISRACGFRVSLGIGVDVGANNANANNNNNNNNNNNNNNASAESPRHDVGDR 120
           W+LTFFYRVISRACG+RVSLG G DVG NN      N+NNNNNNNN +SAESPR DVG+R
Sbjct: 61  WLLTFFYRVISRACGYRVSLGTGEDVGTNNV-----NDNNNNNNNNASSAESPRQDVGER 120

Query: 121 ADEEDGDNGDQRQSTSSSNNSVASRESEMPLAITMGS 158
            + ED +N DQR+S SSSNNS+ SRESEMPLAITM S
Sbjct: 121 GN-EDNNNVDQRKSNSSSNNSIVSRESEMPLAITMAS 151

[Close]

BLAST of Lsi10G007520 vs. NCBI nr
Match: KAE8651991.1 (hypothetical protein Csa_016945 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 1.5e-48
Identity = 111/157 (70.70%), Postives = 117/157 (74.52%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
           MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLP+ GLSLVCLPWFF
Sbjct: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPITGLSLVCLPWFF 60

Query: 61  WILTFFYRVISRACGFRVSLGIGVDVGANNANANNNNNNNNNNNNNNASAESPRHDVGDR 120
           W+LTFFYRV+SRACGFRVSLGIG D                              DVG+R
Sbjct: 61  WLLTFFYRVLSRACGFRVSLGIGAD------------------------------DVGER 120

Query: 121 ADEEDGDNGDQRQSTSSSNNSVASRESEMPLAITMGS 158
            D ED +N DQR S SSSNNS+ SRESEMPLAITM S
Sbjct: 121 -DNEDNNNADQRHSNSSSNNSIVSRESEMPLAITMAS 126

[Close]

BLAST of Lsi10G007520 vs. TAIR 10
Match: AT4G30770.1 (Putative membrane lipoprotein )

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-20
Identity = 76/165 (46.06%), Postives = 96/165 (58.18%), Query Frame = 0


Query: 1   MSLVNPSAGRAFIWIVTCFLFFSILSGGGCLLMYMILPETETTAWLPVAGLSLVCLPWFF 60
           M + +P AG+AFI ++T FLF SI  GGGCL+ Y ILP      WL   G+  VCLPWFF
Sbjct: 1   MPVPDPRAGQAFICLITLFLFLSIAVGGGCLIAYTILP--YPPVWLSYLGIVFVCLPWFF 60

Query: 61  WILTFFYRVISRACGFRVSLGIGVDVGANNANANNNNNNNNNNNNNNASAESP------- 120
           WILTF YR++SR  GFR+ +G     G NN NAN      + +     S ESP       
Sbjct: 61  WILTFAYRIVSRTFGFRMVVG----SGGNNNNANGETMTRDLDPPEQ-SLESPDDDDPEP 120

Query: 121 -RHDVGDRADEEDGDNGDQRQSTSSSNNSVASRESEMPLAITMGS 158
             H  G      +G+   +R ST SSN+++AS ESEMPLAI+M S
Sbjct: 121 IAHPQGQVLVSIEGNQSKKRMST-SSNSTIASHESEMPLAISMAS 157

The following BLAST results are available for this feature:

BLAST of Lsi10G007520 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi10G007520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJX6	3.8e-58	81.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G336080 PE=4 SV=1	[more]
A0A5A7TCV0	2.1e-56	78.98	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CDW9	3.5e-56	78.98	Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103499619 PE=4 SV=1	[more]
A0A6J1D6I2	4.0e-44	69.57	uncharacterized protein LOC111017503 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1EV39	5.3e-44	69.43	uncharacterized protein LOC111438319 OS=Cucurbita moschata OX=3662 GN=LOC1114383...	[more]

BLAST of Lsi10G007520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900833.1	7.0e-67	89.81	uncharacterized protein LOC120087896 [Benincasa hispida]	[more]
XP_011649431.1	7.8e-58	81.53	putative uncharacterized protein DDB_G0284715 [Cucumis sativus]	[more]
KAA0040748.1	4.3e-56	78.98	hypothetical protein E6C27_scaffold703G00110 [Cucumis melo var. makuwa] >TYK0206...	[more]
XP_008460874.1	7.3e-56	78.98	PREDICTED: putative uncharacterized protein DDB_G0283431 [Cucumis melo]	[more]
KAE8651991.1	1.5e-48	70.70	hypothetical protein Csa_016945 [Cucumis sativus]	[more]

BLAST of Lsi10G007520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30770.1	2.4e-20	46.06	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..157
None	No IPR available	PANTHER	PTHR34964:SF3	MEMBRANE LIPOPROTEIN-RELATED	coord: 5..155
None	No IPR available	PANTHER	PTHR34964	MEMBRANE LIPOPROTEIN-RELATED	coord: 5..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G007520.1	Lsi10G007520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane