Lsi10G007350 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi10G007350
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibosomal protein S19
Locationchr10: 10156045 .. 10160090 (+)
RNA-Seq ExpressionLsi10G007350
SyntenyLsi10G007350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCCACGATCTATATGGAAGAGCTGTTTTGTTGATGCATTTCTGTTGAAAATGAAGAATAAGATAGATCCTGTTTTGAACAGGAAAATTTGGTCACGTAGATCTACGATTTTGCCGGAATTCGTTGGTAACTCCGTACGAATTTACAATGGAAAAACTTTTGTTCGCTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCTATGACACGGAAACGAAGAGTTCCAAAAACAAATATTGGACCTGGACCGCGAAAAAAGGGGGATAAAAAGTAAGTCCAAGCGCAAGGAAATCCGATTTCGCATTTCATATTCACTTTTTTTTTTTTTTTTCCTCAAATCAAGTTTCTAGTAAAATCAGTCCGATGCAGTCATTGTCGCTGTTTTTTTTATATATTTTCGCCAGAGACAGTCATCGTTTGACGTTTGATATTGCCACAGCTCTCGTTGTTTCGGTATGATTCTGATATAGTCGCCACCACCCTTTCTTTACGTTATGTCTCACTATATACTGATAATTTTAAATCTCTATTTCAAATTTTATTATGAGTTCTGTTCTACCAAAAAAATTAGAATTAGAAACTTTCAAGAGGAGCTCTATTCTTTGATAACAACAGTCGACCTCTATGTTTAATTTATTGATCTTGGAATTCCCACTGTGCAGCAATATTACTATTTAATGCAAATCCTCATCTCAGTTGTAACTTAGGAATAGGTATTCTTGTTATTGTTGTTAAAATCTTATTATACTGTTCTTCAGCCCTCTGTCATAGAAGTTGTTAGGCTGTTAGCTCAATTACGTGATATTTGTTAATACCTCACTCTTGTAAACCTTGGGTATTTATACCCCTTTGTGATTATACTGAGTAATCAAGCATTACAGCAAGTTACTTTCATTTACATTGCTCTGAGTTATTTGTTGAGGTTTTCAACTTGATCCTTGGTTTGTAAGTTGGTATCAGAGCCATCCTCTTTCTTTTAGACTATCTCTGCTGTTCTTGTTACTCCTAATCCGAGGCTTGAACAATGGGTGACTAAAGATCAAGCACTCCTTGGGTGGTTGTTTGGATCAATGACGTCAGCTATTGCCACAGAAGTCCATCTATTTGGTGCAACAAATGCTAAGAGCAATTCTACAAACCACAAGAAAGGGAATTATGAATATGGCAGAATACTTCTTGTCTCTGAAAGCTGGGTCACCAGGTATCTCTCAATGATCTAATTTCTTACGCCATAGACGGTAATTAATGCTGAGTACCTTTCTATTACTTGTACTATTGAAGGTAAAGCCACTCTAAAATGGCTAGAACAACCCAAAACTGACATAAATCTTACTCTACACAACAGACATATATACATACTTATTTATTTTTCCTCCCTATAATCACACAGGGAAATTGGGGAAAATAAGACAAAATTTTGGAGAAAAAAAAATTTGGGATTACTTAAAAAAAAAAAAGAGAGTTTTAGGATAAATTGCATGTGATATTTACAATTTGCCCATTTAGTTAAAAAAAGAAAAGCCCCAAACCTCTTTAGTCTTCACGATGTCTTCTCTTTCACACGATTTCTTCTCCTTCCATTCCATCTCTCGTGCACAACTCATAGAAATAGCATCATCGGACTCCTTCCATTCCATCTCTCGTGCTCGACTCATAGCAGTTGCATCACCAGATGTTACGTTTCCATGCCATCCATCTCTTTGCGCACGACTCATAGCAGCAGCAGCCCGATTCTTAAACTTTATTGTAAAGAACATTGTAAAGAACTTTAAACCTTTTTATTTGTGTGAAAATTTATATTTTGGGTTTTTTTTTTTTGAGTTGTTAACTTATATATTTATTGTTTTTTTTTTTTTTTTTATTGTTTATAACCTTAAACCTTGATATTTTGGTTAATTTTTTTTTTTTTTTTAGTTTTTTTCCCTCATTTTCTTTGTATTTTCTTTTAAGGTTTCTGTTTTTTTTTTTTATAATTTTTTTTCATGTGTCTAATTTGTAAATTTTTTTTTGAGGTTGCAGAAATATTAAAAACATTTTGATAACTTAAGGATGACACATATGACTAGAAAAGATGAAGGAGGTTTATTAAAAGATATTGTTGTAAGTAAAGAAATAGCATACAAAGATTTAATGGCCTAGACTCTATGCTCTTGCAAAAATTAATCCTATGGGAGTTTGATATGAAAATAAGATGTACGAGATAAAAGTTGAAAATGAAGTTTCTCCAATTGAGTTAAGCAATCTGTTGGAAGTCTGTACATTTCATTTGAACCTTGGAACAGTAGCGAAACGGGTGATTTACATGGTGAAAGTAAGAAAGGTTTAAGAACTTAAATGTTGTAATGGATGCATTAAATGAGATTGAAGTTCAAGTTGACTTGCACGATGACACAATAAGGACTACTAGGTGAGAATCATATGATTCAAAAGCATATAATTTTACATGGAGTCAATTGGGATGAATATTGAGTCGTATGAGTCGAGAAGTACTTCAAGAGAATATAGTAAAGGAAAAGGTAAAGTTAAATATGGATCAACCAGCTGAAGGACATATTGAAAAAAAAGAAAGACTCTATAAGTGATGAGTTGGAAGTAGGACAATTTTTTTTTTCGCAAGAGAGAATTGTCCATGAGGTTAAGTATTTTGACAATGAAAAAGAATTTTCAGATTTCAAGGAAGAAGTCTACGAAACTGGTGCTTTATGTTAAATGCATTGACGAGAATTGTAAGTAGAGATTGCGAGCAATCAAATTGGAGGGCTCAAACATATTCAAGATTTCAAAGTATGTAAATGTTCATTCGCACTCTCTTGATATTCTGAATCAAGACCATAGGTAAGCAAAAACTTAGATAGTTGGATAACTAATCAAGTCCAAATCAAAGGAGTTGGTCGTTAATACAAACCACATGAAATCATAGAAGACATGAGACAAGACTATGACATAAATATGAGTTATGAAAAAGCATAGTGTGCCAGAGAAGTTGCATACGAACTAGTACGAGGGTTCCTTGAAAAGTCATATAATTTATTGTGTCGTTATGGTGAAACACTGAAACTTGCAAATTCAGGTACAATTTACTAAATTGAACTTGAAGATGAGTCTTTCTTCAAATGTTTTTTTATGGCTATTAGTCCATGTGTTTGATGATTTGTAAGTGCATAAGACCTGTTATAGTTGTGGATGAAACTTTTCTAAAAAACAAATATCGAGGTCAATTGATAGTTGTCATTTGCTTAAGATGATAATAATCAAATTTATCCCCTAGCCTTCAGAATTGTTGATAGACTCCATAATCCATTTCAATTTCAAAATATTTGGAGCAAAACAGTCGAACATAGGATTTATAGTAAGGAATAATGCTTTTTTTTTTCCAAGTTAATGGACACATAGTAACAACTAATCAAAATTGTTACTTGTGCCAAAAACTTCTAAAATTTTCGAAGATAATTCTCAGATTTGAGTCATTTTTCTTCTCCTTCACTTTTCTTCTAGTCTCCTCAGAATATTTTTAATCTTAACTAATACTTTATCTACCCTAATCTATTAGGTTCCTCCTTGGACTAGAGCTCCCTTGACTAGACTGAGCGCTCAGATGAATTTGAATCCCGTGATGTCACATCACCTTGAGGCTCCTCTACGATTTCATTTACTTGCCCAATCAAGGGAACAGGATCCACTTGTAGTGCCAGCTGTGGTGGGGGATCGTCTGGTGCCAGCTGTGGTGGTTTCGATGCTAGTTATGGTGGGGGATCATCTTCGACTTGTAGTCTCGGCTATGGTGTGAGATCGTTTGGTGCCAGCTATGGTGGGGTATCGACTTCCGATGCTAGCTGTGGTGGTTTCGGAGCCAACTGTGCTGGGGGATTGTCTTCCACTGCTAGTTGTGGTGATTCCGGTGCCAGTTGTGGTCAGGGATCCTCTTCCCGTGCCAGTGGTACTCGAAAATCCACTTGTAGTGTCTGCTGTGGTGGGAGAAGGTCTCCCCAAGCTGGTGTTACTGGGCGAACGCCTGGTCGCGCTAAATAG

mRNA sequence

ATGTCGCCACGATCTATATGGAAGAGCTGTTTTGTTGATGCATTTCTGTTGAAAATGAAGAATAAGATAGATCCTGTTTTGAACAGGAAAATTTGGTCACGTAGATCTACGATTTTGCCGGAATTCGTTGGTAACTCCGTACGAATTTACAATGGAAAAACTTTTGTTCGCTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCTATGACACGGAAACGAAGAGTTCCAAAAACAAATATTGGACCTGGACCGCGAAAAAAGGGGGATAAAAAAGACAGTCATCGTTTGACGTTTGATATTGCCACAGCTCTCGTTGTTTCGACTATCTCTGCTGTTCTTGTTACTCCTAATCCGAGGCTTGAACAATGGGTGACTAAAGATCAAGCACTCCTTGGGTGGTTGTTTGGATCAATGACGTCAGCTATTGCCACAGAAGTCCATCTATTTGGTGCAACAAATGCTAAGAGCAATTCTACAAACCACAAGAAAGGGAATTATGAATATGGCAGAATACTTCTTGTCTCTGAAAGCTGGGTCACCAGTGCCAGCTGTGGTGGGGGATCGTCTGGTGCCAGCTGTGGTGGTTTCGATGCTAGTTATGGTGGGGGATCATCTTCGACTTGTAGTCTCGGCTATGGTGTGAGATCGTTTGGTGCCAGCTATGGTGGGGTATCGACTTCCGATGCTAGCTGTGGTGGTTTCGGAGCCAACTGTGCTGGGGGATTGTCTTCCACTGCTAGTTGTGGTGATTCCGGTGCCAGTTGTGGTCAGGGATCCTCTTCCCGTGCCAGTGGTACTCGAAAATCCACTTGTAGTGTCTGCTGTGGTGGGAGAAGGTCTCCCCAAGCTGGTGTTACTGGGCGAACGCCTGGTCGCGCTAAATAG

Coding sequence (CDS)

ATGTCGCCACGATCTATATGGAAGAGCTGTTTTGTTGATGCATTTCTGTTGAAAATGAAGAATAAGATAGATCCTGTTTTGAACAGGAAAATTTGGTCACGTAGATCTACGATTTTGCCGGAATTCGTTGGTAACTCCGTACGAATTTACAATGGAAAAACTTTTGTTCGCTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCTATGACACGGAAACGAAGAGTTCCAAAAACAAATATTGGACCTGGACCGCGAAAAAAGGGGGATAAAAAAGACAGTCATCGTTTGACGTTTGATATTGCCACAGCTCTCGTTGTTTCGACTATCTCTGCTGTTCTTGTTACTCCTAATCCGAGGCTTGAACAATGGGTGACTAAAGATCAAGCACTCCTTGGGTGGTTGTTTGGATCAATGACGTCAGCTATTGCCACAGAAGTCCATCTATTTGGTGCAACAAATGCTAAGAGCAATTCTACAAACCACAAGAAAGGGAATTATGAATATGGCAGAATACTTCTTGTCTCTGAAAGCTGGGTCACCAGTGCCAGCTGTGGTGGGGGATCGTCTGGTGCCAGCTGTGGTGGTTTCGATGCTAGTTATGGTGGGGGATCATCTTCGACTTGTAGTCTCGGCTATGGTGTGAGATCGTTTGGTGCCAGCTATGGTGGGGTATCGACTTCCGATGCTAGCTGTGGTGGTTTCGGAGCCAACTGTGCTGGGGGATTGTCTTCCACTGCTAGTTGTGGTGATTCCGGTGCCAGTTGTGGTCAGGGATCCTCTTCCCGTGCCAGTGGTACTCGAAAATCCACTTGTAGTGTCTGCTGTGGTGGGAGAAGGTCTCCCCAAGCTGGTGTTACTGGGCGAACGCCTGGTCGCGCTAAATAG

Protein sequence

MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKKDSHRLTFDIATALVVSTISAVLVTPNPRLEQWVTKDQALLGWLFGSMTSAIATEVHLFGATNAKSNSTNHKKGNYEYGRILLVSESWVTSASCGGGSSGASCGGFDASYGGGSSSTCSLGYGVRSFGASYGGVSTSDASCGGFGANCAGGLSSTASCGDSGASCGQGSSSRASGTRKSTCSVCCGGRRSPQAGVTGRTPGRAK
Homology
[Close]
BLAST of Lsi10G007350 vs. ExPASy Swiss-Prot
Match: P27527 (Ribosomal protein S19, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS19 PE=2 SV=2)

HSP 1 Score: 147.1 bits (370), Expect = 3.1e-34
Identity = 73/95 (76.84%), Postives = 79/95 (83.16%), Query Frame = 0 

Query: 1  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
          M  RSIWK  FVDAFLL+MK K D + NRKIWSRRS+ILPEFV   VRIYNGKTFVRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDLLFNRKIWSRRSSILPEFVDCFVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDK 96
          TEG+VGHKFGEFA TRKRR  +TNIGPG RK+G K
Sbjct: 61 TEGKVGHKFGEFAFTRKRRPSRTNIGPG-RKRGKK 94

[Close]
BLAST of Lsi10G007350 vs. ExPASy Swiss-Prot
Match: P39697 (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS19 PE=1 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 1.8e-26
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 0 

Query: 1   MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
           M  RS+WK  FVDAFL+K KN     LNRKIWSRRSTILPE+V ++VRIYNGKT VRCKI
Sbjct: 131 MMSRSVWKDPFVDAFLMKKKN---AALNRKIWSRRSTILPEYVDSAVRIYNGKTHVRCKI 190

Query: 61  TEGRVGHKFGEFAMTRK 78
           TEG+VGHKFGEFA TRK
Sbjct: 191 TEGKVGHKFGEFAFTRK 204

[Close]
BLAST of Lsi10G007350 vs. ExPASy Swiss-Prot
Match: P26874 (Ribosomal protein S19, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS19 PE=3 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 1.0e-16
Identity = 52/91 (57.14%), Postives = 57/91 (62.64%), Query Frame = 0 

Query: 4  RSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEG 63
          RSIWK  FVD  L K K      +  +IWSRRS ILP+FVG   +IYNGK FV  KITE 
Sbjct: 3  RSIWKGPFVDTCLFKQKK-----IRWRIWSRRSCILPQFVGCYAQIYNGKGFVGLKITEE 62

Query: 64 RVGHKFGEFAMTR------KRRVP-KTNIGP 88
           VGHKFGEFA TR      KR +P KT I P
Sbjct: 63 MVGHKFGEFASTRKTSSLGKRALPSKTKIKP 88

[Close]
BLAST of Lsi10G007350 vs. ExPASy Swiss-Prot
Match: Q98N53 (30S ribosomal protein S19 OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=rpsS PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.2e-15
Identity = 47/98 (47.96%), Postives = 60/98 (61.22%), Query Frame = 0 

Query: 4  RSIWKSCFVDAFLLKMKNKI-----DPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRC 63
          RSIWK  F+D +LLK  +K+     + V+  K+WSRRSTILP+FVG +  +YNG+  V  
Sbjct: 3  RSIWKGPFIDGYLLKKVDKVREGGRNEVI--KMWSRRSTILPQFVGFTFGVYNGQKHVPV 62

Query: 64 KITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKK 97
           + E  VGHKFGEFA TR      T  G G  KK  +K
Sbjct: 63 SVNEDMVGHKFGEFAPTR------TYYGHGADKKAKRK 92

[Close]
BLAST of Lsi10G007350 vs. ExPASy Swiss-Prot
Match: B2S675 (30S ribosomal protein S19 OS=Brucella abortus (strain S19) OX=430066 GN=rpsS PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.2e-15
Identity = 47/98 (47.96%), Postives = 59/98 (60.20%), Query Frame = 0 

Query: 4  RSIWKSCFVDAFLLKMKNKI-----DPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRC 63
          RS+WK  FVD +LLK   K+     + V+  K+WSRRSTILP+FVG +  +YNG   V  
Sbjct: 3  RSVWKGPFVDGYLLKKAEKVREGGRNEVI--KMWSRRSTILPQFVGLTFGVYNGNKHVPV 62

Query: 64 KITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKK 97
           ++E  VGHKFGEFA TR      T  G G  KK  +K
Sbjct: 63 SVSEEMVGHKFGEFAPTR------TYYGHGADKKAKRK 92

[Close]
BLAST of Lsi10G007350 vs. ExPASy TrEMBL
Match: D5I3F0 (Ribosomal protein S19 OS=Cucurbita pepo OX=3663 GN=rps19-1 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.8e-35
Identity = 75/99 (75.76%), Postives = 88/99 (88.89%), Query Frame = 0 

Query: 1   MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
           M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61  TEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKKDSH 100
           TEGRVGHKFGEFA+TRKRR+ +TNIGPG +K+G+ + ++
Sbjct: 61  TEGRVGHKFGEFALTRKRRLSRTNIGPG-KKRGESQGAY 98

[Close]
BLAST of Lsi10G007350 vs. ExPASy TrEMBL
Match: D5I3G6 (Ribosomal protein S19 OS=Cucurbita pepo OX=3663 GN=rps19-2 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.8e-35
Identity = 75/99 (75.76%), Postives = 88/99 (88.89%), Query Frame = 0 

Query: 1   MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
           M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61  TEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKKDSH 100
           TEGRVGHKFGEFA+TRKRR+ +TNIGPG +K+G+ + ++
Sbjct: 61  TEGRVGHKFGEFALTRKRRLSRTNIGPG-KKRGESQGAY 98

[Close]
BLAST of Lsi10G007350 vs. ExPASy TrEMBL
Match: D5I3D4 (Ribosomal protein S19 OS=Citrullus lanatus OX=3654 GN=rps19-2 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-34
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 0 

Query: 1  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
          M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG 94
          TEGRVGHKFGEFA+TRKRR+ +TNIGPG  KKG
Sbjct: 61 TEGRVGHKFGEFALTRKRRLSRTNIGPG--KKG 91

[Close]
BLAST of Lsi10G007350 vs. ExPASy TrEMBL
Match: A0A7D6C0E4 (Ribosomal protein S19 OS=Luffa acutangula OX=56866 GN=rps19-2 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-34
Identity = 76/93 (81.72%), Postives = 82/93 (88.17%), Query Frame = 0 

Query: 1  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
          M  RSIWK CFVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKT VRCKI
Sbjct: 1  MPRRSIWKGCFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTSVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG 94
          TEGRVGHKFGEFA TRKRR+ +TNIGPG  KKG
Sbjct: 61 TEGRVGHKFGEFASTRKRRLSRTNIGPG--KKG 91

[Close]
BLAST of Lsi10G007350 vs. ExPASy TrEMBL
Match: Q5MA05 (Ribosomal protein S19 OS=Nicotiana tabacum OX=4097 GN=rps19 PE=3 SV=2)

HSP 1 Score: 154.5 bits (389), Expect = 7.2e-34
Identity = 76/95 (80.00%), Postives = 81/95 (85.26%), Query Frame = 0 

Query: 1  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
          M  RSIWK  FVDAFLL+MK K DP+ NRKIWSRRS+ILPEFV  SVRIYNGKTFVRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLFNRKIWSRRSSILPEFVDCSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDK 96
          TEG+VGHKFGEFA TRKRR  +TNIGPG RKKG K
Sbjct: 61 TEGKVGHKFGEFAFTRKRRPSRTNIGPG-RKKGKK 94

[Close]
BLAST of Lsi10G007350 vs. NCBI nr
Match: YP_003587380.1 (ribosomal protein S19 [Cucurbita pepo] >ACV96694.1 ribosomal protein S19 [Cucurbita pepo])

HSP 1 Score: 158.7 bits (400), Expect = 7.9e-35
Identity = 75/99 (75.76%), Postives = 88/99 (88.89%), Query Frame = 0 

Query: 1   MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
           M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61  TEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKKDSH 100
           TEGRVGHKFGEFA+TRKRR+ +TNIGPG +K+G+ + ++
Sbjct: 61  TEGRVGHKFGEFALTRKRRLSRTNIGPG-KKRGESQGAY 98

[Close]
BLAST of Lsi10G007350 vs. NCBI nr
Match: YP_003587364.1 (ribosomal protein S19 [Cucurbita pepo] >ACV96693.1 ribosomal protein S19 [Cucurbita pepo])

HSP 1 Score: 158.7 bits (400), Expect = 7.9e-35
Identity = 75/99 (75.76%), Postives = 88/99 (88.89%), Query Frame = 0 

Query: 1   MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
           M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61  TEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKKDSH 100
           TEGRVGHKFGEFA+TRKRR+ +TNIGPG +K+G+ + ++
Sbjct: 61  TEGRVGHKFGEFALTRKRRLSRTNIGPG-KKRGESQGAY 98

[Close]
BLAST of Lsi10G007350 vs. NCBI nr
Match: YP_003587264.1 (ribosomal protein S19 [Citrullus lanatus] >ACV96651.1 ribosomal protein S19 [Citrullus lanatus])

HSP 1 Score: 157.1 bits (396), Expect = 2.3e-34
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 0 

Query: 1  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
          M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG 94
          TEGRVGHKFGEFA+TRKRR+ +TNIGPG  KKG
Sbjct: 61 TEGRVGHKFGEFALTRKRRLSRTNIGPG--KKG 91

[Close]
BLAST of Lsi10G007350 vs. NCBI nr
Match: YP_009913640.1 (ribosomal protein S19 [Luffa acutangula] >YP_009913653.1 ribosomal protein S19 [Luffa acutangula] >QLJ93027.1 ribosomal protein S19 [Luffa acutangula] >QLJ93028.1 ribosomal protein S19 [Luffa acutangula])

HSP 1 Score: 156.8 bits (395), Expect = 3.0e-34
Identity = 76/93 (81.72%), Postives = 82/93 (88.17%), Query Frame = 0 

Query: 1  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
          M  RSIWK CFVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKT VRCKI
Sbjct: 1  MPRRSIWKGCFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTSVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG 94
          TEGRVGHKFGEFA TRKRR+ +TNIGPG  KKG
Sbjct: 61 TEGRVGHKFGEFASTRKRRLSRTNIGPG--KKG 91

[Close]
BLAST of Lsi10G007350 vs. NCBI nr
Match: BAD83473.2 (ribosomal protein S19 [Nicotiana tabacum])

HSP 1 Score: 154.5 bits (389), Expect = 1.5e-33
Identity = 76/95 (80.00%), Postives = 81/95 (85.26%), Query Frame = 0 

Query: 1  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
          M  RSIWK  FVDAFLL+MK K DP+ NRKIWSRRS+ILPEFV  SVRIYNGKTFVRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLFNRKIWSRRSSILPEFVDCSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDK 96
          TEG+VGHKFGEFA TRKRR  +TNIGPG RKKG K
Sbjct: 61 TEGKVGHKFGEFAFTRKRRPSRTNIGPG-RKKGKK 94

[Close]
BLAST of Lsi10G007350 vs. TAIR 10
Match: AT5G47320.1 (ribosomal protein S19 )

HSP 1 Score: 121.3 bits (303), Expect = 1.3e-27
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 0 

Query: 1   MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
           M  RS+WK  FVDAFL+K KN     LNRKIWSRRSTILPE+V ++VRIYNGKT VRCKI
Sbjct: 131 MMSRSVWKDPFVDAFLMKKKN---AALNRKIWSRRSTILPEYVDSAVRIYNGKTHVRCKI 190

Query: 61  TEGRVGHKFGEFAMTRK 78
           TEG+VGHKFGEFA TRK
Sbjct: 191 TEGKVGHKFGEFAFTRK 204

[Close]
BLAST of Lsi10G007350 vs. TAIR 10
Match: ATCG00820.1 (ribosomal protein S19 )

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-08
Identity = 29/75 (38.67%), Postives = 46/75 (61.33%), Query Frame = 0 

Query: 4  RSIWKSCFVDAFLLKMKNKIDPVLNRKI---WSRRSTILPEFVGNSVRIYNGKTFVRCKI 63
          RS+ K+ FV   LL+   K++    ++I   WSR STI+P  +G+++ I+NG+  +   I
Sbjct: 3  RSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYI 62

Query: 64 TEGRVGHKFGEFAMT 76
           +  VGHK GEF+ T
Sbjct: 63 IDLMVGHKLGEFSPT 77

[Close]
BLAST of Lsi10G007350 vs. TAIR 10
Match: AT5G09490.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.5e-04
Identity = 18/44 (40.91%), Postives = 28/44 (63.64%), Query Frame = 0 

Query: 34  RRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRK 78
           R   I+PE +G+ + +YNGKTF + +I    +GH   EF++T K
Sbjct: 88  RNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYK 131

The following BLAST results are available for this feature:
BLAST of Lsi10G007350 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P275273.1e-3476.84Ribosomal protein S19, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS19 PE=2 SV... [more]
P396971.8e-2675.3240S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS1... [more]
P268741.0e-1657.14Ribosomal protein S19, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS19 P... [more]
Q98N533.2e-1547.9630S ribosomal protein S19 OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 91... [more]
B2S6754.2e-1547.9630S ribosomal protein S19 OS=Brucella abortus (strain S19) OX=430066 GN=rpsS PE=... [more]
BLAST of Lsi10G007350 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
D5I3F03.8e-3575.76Ribosomal protein S19 OS=Cucurbita pepo OX=3663 GN=rps19-1 PE=3 SV=1[more]
D5I3G63.8e-3575.76Ribosomal protein S19 OS=Cucurbita pepo OX=3663 GN=rps19-2 PE=3 SV=1[more]
D5I3D41.1e-3481.72Ribosomal protein S19 OS=Citrullus lanatus OX=3654 GN=rps19-2 PE=3 SV=1[more]
A0A7D6C0E41.5e-3481.72Ribosomal protein S19 OS=Luffa acutangula OX=56866 GN=rps19-2 PE=3 SV=1[more]
Q5MA057.2e-3480.00Ribosomal protein S19 OS=Nicotiana tabacum OX=4097 GN=rps19 PE=3 SV=2[more]
BLAST of Lsi10G007350 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_003587380.17.9e-3575.76ribosomal protein S19 [Cucurbita pepo] >ACV96694.1 ribosomal protein S19 [Cucurb... [more]
YP_003587364.17.9e-3575.76ribosomal protein S19 [Cucurbita pepo] >ACV96693.1 ribosomal protein S19 [Cucurb... [more]
YP_003587264.12.3e-3481.72ribosomal protein S19 [Citrullus lanatus] >ACV96651.1 ribosomal protein S19 [Cit... [more]
YP_009913640.13.0e-3481.72ribosomal protein S19 [Luffa acutangula] >YP_009913653.1 ribosomal protein S19 [... [more]
BAD83473.21.5e-3380.00ribosomal protein S19 [Nicotiana tabacum][more]
BLAST of Lsi10G007350 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G47320.11.3e-2775.32ribosomal protein S19 [more]
ATCG00820.11.8e-0838.67ribosomal protein S19 [more]
AT5G09490.11.5e-0440.91Ribosomal protein S19 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002222Ribosomal protein S19/S15PRINTSPR00975RIBOSOMALS19coord: 63..78
score: 55.04
coord: 31..50
score: 47.58
coord: 51..63
score: 42.06
IPR002222Ribosomal protein S19/S15PFAMPF00203Ribosomal_S19coord: 4..78
e-value: 3.4E-24
score: 84.5
IPR002222Ribosomal protein S19/S15PANTHERPTHR11880RIBOSOMAL PROTEIN S19P FAMILY MEMBERcoord: 2..91
IPR002222Ribosomal protein S19/S15HAMAPMF_00531Ribosomal_S19coord: 2..93
score: 18.634295
IPR023575Ribosomal protein S19/S15, superfamilyGENE3D3.30.860.1030s Ribosomal Protein S19; Chain Acoord: 1..86
e-value: 6.5E-26
score: 92.1
IPR023575Ribosomal protein S19/S15, superfamilySUPERFAMILY54570Ribosomal protein S19coord: 4..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 259..299
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 259..281
NoneNo IPR availablePANTHERPTHR11880:SF3640S RIBOSOMAL PROTEIN S19, MITOCHONDRIALcoord: 2..91
IPR020934Ribosomal protein S19 conserved sitePROSITEPS00323RIBOSOMAL_S19coord: 51..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G007350.1Lsi10G007350.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome