Lsi10G006930 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCTTCAATTAGAAGTCGTCGTCATGTGGTGGTCATAGAGTCTGGTCCTTTAGAAGGAAACACTAGCAATTTGGAGGAAGCTAATGTTGATACAAAAGCTAATTTGACAGTTAATGGTGATATTGATGTAATAGGTATGTATGAATTTATTATACGAATTGACATTCAAGTTTTATAATTTAAATGTTTCACTTTTTTTCCTTTAAAAAAAGATTCATGTAAGACACGGGGTCAAACACGCAACCTATAAAAGCTGGTTCGAATGCTTTGGGCAATTTCTTAGGGACTATTGGAAGAACTTGTAATCTTTATCTCCTAAATTATGATGATTGGAGAAAGGTACCCAATATTTACAAGGAAGAAGTTTGGCACATCATTAAGGTATGCAAACAAAATTATATGTTGTATGAATTTTTGTATATCAATGTTACTTATTGTTATACTCATTGACTTTGTATTTTTCAGTCAAAATTCACTGTTCAAGAAAAACATAAAAAATTGTGTTTGTCATCATTATCTAGAAAGTGGGATGGCTATAAATGTAATCTACGAGGAAAGTATGTTTTAGATATGATACAGAAGATTAATGCTTGAAACATAAACCTGACAACATACCTAGGGATCAGTGGGTTGGCTTAGTCTCTTTTTGGTACTCATTTGAAGGAATGGTAATCTTTTTAATTTTTTATTATTAGATAATAATTTGATTATTTTATGCAATTCTAGATTTATATATTTATCTCAGAGACGAAATGCAAGAAATACTGAGATACGTAAAAAACAAAAATTTACTCATTCATGTGGAAGAAAAATTCTAGCACGTAAAACAAATGAGATGGTAATTTTCTCTATACATTTGTATTGTTAAGCAAGTTATGATTTACATATTAACTAGTTTACTAAATGATAGAAAGAAGAGTTGGGGAAAGATCCCACCAGAGTAGAAGTCTTTCTAACTGCTCATAAGCTAAAGGATGGAAGTTACATGGATGAGGAGTTTGCTAAAGTTGTCGTAAGTTCAAAATTAATTTAAAAAATTAAGAGCTTTATTGTTTAGTAATTATAATCTTATTTTTTTATAGGAAAAATTTCAAGAATGTATGAGTCAAAATGTTGATACCTCAAGAGTTATGCCTTCTGAGAAGGAGGTGTATGAACAAGTCATGGGTAAAGAGCATTCTGGACGTGTTCGTGGAATGGGATTAGGACCTACACCCACTGAAGTTTTTAAAACTAAATATCATCAATGTGTCGGGGCTGAGATCACTTCTGAGACAAGTATGGAAAACCATGAAGCTGTAGAAGAAAGATCTAGATTAACAAAACTAGAGTCCGAAATGGTGGACATGCGGTCAGATATGAAGAAAAATACTTTTATTATTGGGACAAATGAATTCTACACAAGTTGGTAGCAGTAGTGGGACATCTTTAGATGACAATTCAAGAGAGGTAGGAAATATAAGTTAATTTATTTTAATATTGTTGTCTTAATATATTTCTTATTCTAATACATTTTTTTTAATTTTTTAATAGGATCAAAGGGAAAATGTATCTGAAAGCAACAAAAGATCAGTGATAGATAGTTTATTTTCATTTTTCTTTTATTGATTTGAATGAGGATAGGTGATAGTACTTCATAGGATTTTTAATAGTGATAGGGGACAGTACTACTAGGATTTTGAATACTTTATCTTCCAATTTTTCTATTAGTACTTGATCATATTATTACTTCCCCTAGCAATTTTTACTTGTTATAATATTTGTAAGTGTGAATGAAATTTGAAAAATATATGTGGAATGCAAAAAGAATCATAGTTACAATTTGTTGGAAAATATAGACTATAACAATTGTTGTGATATAGGAACTAAAATTGTTAGTGTAAAATCATTTAATTATTGCAGCAATTATCAAAGAAGTTTTATGTTTGCACAAATTGTTGCAAAAGAGTAGAGATCGCTATAACTATTGCAATAGAGAAAAATATCGTTGCACATATTCAAACTATTAAAGCAATAATAAATCGTTGCAATAGGATCAAATTGCAACGGTTTCAAGGTGCTCCTATTATTTTTTTAACCGATCCGAATTAGCAGAGGTTATTCACTACTGCTAATTTATTTAAAGAATTGTTGCTATTGGAATCGTAATTGCAGCGGTTCATATAATATTGCAGCGGTTACTAAAATGTTGCGCATGAAACAACAGTTGCTAAAATATTGCATTTTGATGTAATTAACCACTACAATATAGGTACCTATTGCGGCGCTTATTTAATCTGATTCCAGCGGTTGTTAAAACCGCTGCAATAAAGGCTTTCAACACAGCCTCTGCCAGCAGTTTCTTAACCGTTGCGACATATCTCCCAACGGTTTCAAACTGCCGCAATAGCTCATAA ATGCCTTCAATTAGAAGTCGTCGTCATGTGGTGGTCATAGAGTCTGGTCCTTTAGAAGGAAACACTAGCAATTTGGAGGAAGCTAATGTTGATACAAAAGCTAATTTGACAGTTAATGGTGATATTGATGTAATAGGTATTCAAAATTCACTGTTCAAGAAAAACATAAAAAATTGTGTTTGTCATCATTATCTAGAAAGTGGGATGGCTATAAATGTAATCTACGAGGAAAAAGAGTTGGGGAAAGATCCCACCAGAGTAGAAGTCTTTCTAACTGCTCATAAGCTAAAGGATGGAAGTTACATGGATGAGGAGTTTGCTAAAGTTGTCGAAAAATTTCAAGAATGTATGAGTCAAAATGTTGATACCTCAAGAGTTATGCCTTCTGAGAAGGAGGTGTATGAACAAGTCATGGGTAAAGAGCATTCTGGACGTGTTCGTGGAATGGGATTAGGACCTACACCCACTGAAGTTTTTAAAACTAAATATCATCAATGTGTCGGGGCTGAGATCACTTCTGAGACAAGTATGGAAAACCATGAAGCTGTAGAAGAAAGATCTAGATTAACAAAACTAGAGTCCGAAATGGTGGACATGCGGTACCTATTGCGGCGCTTATTTAATCTGATTCCAGCGGTTGTTAAAACCGCTGCAATAAAGGCTTTCAACACAGCCTCTGCCAGCAGTTTCTTAACCGTTGCGACATATCTCCCAACGGTTTCAAACTGCCGCAATAGCTCATAA ATGCCTTCAATTAGAAGTCGTCGTCATGTGGTGGTCATAGAGTCTGGTCCTTTAGAAGGAAACACTAGCAATTTGGAGGAAGCTAATGTTGATACAAAAGCTAATTTGACAGTTAATGGTGATATTGATGTAATAGGTATTCAAAATTCACTGTTCAAGAAAAACATAAAAAATTGTGTTTGTCATCATTATCTAGAAAGTGGGATGGCTATAAATGTAATCTACGAGGAAAAAGAGTTGGGGAAAGATCCCACCAGAGTAGAAGTCTTTCTAACTGCTCATAAGCTAAAGGATGGAAGTTACATGGATGAGGAGTTTGCTAAAGTTGTCGAAAAATTTCAAGAATGTATGAGTCAAAATGTTGATACCTCAAGAGTTATGCCTTCTGAGAAGGAGGTGTATGAACAAGTCATGGGTAAAGAGCATTCTGGACGTGTTCGTGGAATGGGATTAGGACCTACACCCACTGAAGTTTTTAAAACTAAATATCATCAATGTGTCGGGGCTGAGATCACTTCTGAGACAAGTATGGAAAACCATGAAGCTGTAGAAGAAAGATCTAGATTAACAAAACTAGAGTCCGAAATGGTGGACATGCGGTACCTATTGCGGCGCTTATTTAATCTGATTCCAGCGGTTGTTAAAACCGCTGCAATAAAGGCTTTCAACACAGCCTCTGCCAGCAGTTTCTTAACCGTTGCGACATATCTCCCAACGGTTTCAAACTGCCGCAATAGCTCATAA MPSIRSRRHVVVIESGPLEGNTSNLEEANVDTKANLTVNGDIDVIGIQNSLFKKNIKNCVCHHYLESGMAINVIYEEKELGKDPTRVEVFLTAHKLKDGSYMDEEFAKVVEKFQECMSQNVDTSRVMPSEKEVYEQVMGKEHSGRVRGMGLGPTPTEVFKTKYHQCVGAEITSETSMENHEAVEERSRLTKLESEMVDMRYLLRRLFNLIPAVVKTAAIKAFNTASASSFLTVATYLPTVSNCRNSS Homology
BLAST of Lsi10G006930 vs. ExPASy TrEMBL
Match: A0A438CKK3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_097576 PE=4 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 2.4e-11 Identity = 52/177 (29.38%), Postives = 84/177 (47.46%), Query Frame = 0
BLAST of Lsi10G006930 vs. ExPASy TrEMBL
Match: A5AQY2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_042244 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 4.2e-11 Identity = 50/160 (31.25%), Postives = 79/160 (49.38%), Query Frame = 0
BLAST of Lsi10G006930 vs. ExPASy TrEMBL
Match: A0A1S4C1D9 (uncharacterized protein LOC107814136 isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107814136 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 7.1e-11 Identity = 43/104 (41.35%), Postives = 68/104 (65.38%), Query Frame = 0
BLAST of Lsi10G006930 vs. ExPASy TrEMBL
Match: A0A6P4D9W7 (uncharacterized protein LOC107478310 isoform X1 OS=Arachis duranensis OX=130453 GN=LOC107485549 PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 9.3e-11 Identity = 45/116 (38.79%), Postives = 68/116 (58.62%), Query Frame = 0
BLAST of Lsi10G006930 vs. ExPASy TrEMBL
Match: A0A6P4DAP9 (uncharacterized protein LOC107488820 OS=Arachis duranensis OX=130453 GN=LOC107488820 PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 9.3e-11 Identity = 45/116 (38.79%), Postives = 68/116 (58.62%), Query Frame = 0
BLAST of Lsi10G006930 vs. NCBI nr
Match: RVW23753.1 (hypothetical protein CK203_097576 [Vitis vinifera]) HSP 1 Score: 79.3 bits (194), Expect = 5.0e-11 Identity = 52/177 (29.38%), Postives = 84/177 (47.46%), Query Frame = 0
BLAST of Lsi10G006930 vs. NCBI nr
Match: CAN73688.1 (hypothetical protein VITISV_042244 [Vitis vinifera]) HSP 1 Score: 78.6 bits (192), Expect = 8.6e-11 Identity = 50/160 (31.25%), Postives = 79/160 (49.38%), Query Frame = 0
BLAST of Lsi10G006930 vs. NCBI nr
Match: XP_016200318.1 (uncharacterized protein LOC107641338 [Arachis ipaensis]) HSP 1 Score: 78.2 bits (191), Expect = 1.1e-10 Identity = 58/175 (33.14%), Postives = 95/175 (54.29%), Query Frame = 0
BLAST of Lsi10G006930 vs. NCBI nr
Match: XP_019255521.1 (PREDICTED: uncharacterized protein LOC109234124 isoform X1 [Nicotiana attenuata]) HSP 1 Score: 77.8 bits (190), Expect = 1.5e-10 Identity = 44/104 (42.31%), Postives = 66/104 (63.46%), Query Frame = 0
BLAST of Lsi10G006930 vs. NCBI nr
Match: XP_016494961.1 (PREDICTED: uncharacterized protein LOC107814136 isoform X1 [Nicotiana tabacum] >XP_016494962.1 PREDICTED: uncharacterized protein LOC107814136 isoform X1 [Nicotiana tabacum]) HSP 1 Score: 77.8 bits (190), Expect = 1.5e-10 Identity = 43/104 (41.35%), Postives = 68/104 (65.38%), Query Frame = 0
BLAST of Lsi10G006930 vs. TAIR 10
Match: AT1G40087.1 (Plant transposase (Ptta/En/Spm family) ) HSP 1 Score: 50.1 bits (118), Expect = 3.0e-06 Identity = 36/119 (30.25%), Postives = 53/119 (44.54%), Query Frame = 0
BLAST of Lsi10G006930 vs. TAIR 10
Match: AT3G30200.1 (Plant transposase (Ptta/En/Spm family) ) HSP 1 Score: 46.6 bits (109), Expect = 3.4e-05 Identity = 35/119 (29.41%), Postives = 52/119 (43.70%), Query Frame = 0
BLAST of Lsi10G006930 vs. TAIR 10
Match: AT1G42700.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cold; LOCATED IN: nucleus; BEST Arabidopsis thaliana protein match is: Plant transposase (Ptta/En/Spm family) (TAIR:AT1G40087.1); Has 10 Blast hits to 10 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 42.7 bits (99), Expect = 4.9e-04 Identity = 33/108 (30.56%), Postives = 55/108 (50.93%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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