Lsi10G006230 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G006230
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Ribosomal protein S10
Location	chr10: 8714271 .. 8715074 (-)
RNA-Seq Expression	Lsi10G006230
Synteny	Lsi10G006230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTGTAGCATTTCCTATAAATTGAGATAGGGGCTTTCTCGTCTAAAGACAGGGGTGAGCTTTTTCACTATACAATGACCACTACGAACGAAGGACCAACGACGATGAAGGAGGAGAAGGAGTAGGAGTAGGAGCTAGCCTGCCTTTCTTTTTTTCATATTTCTGCAACAGGATAAAGGAAACCGATTGAGAAACTTGCATGGGACTGGCTATTCACTCACTTTTTTCTGCTAATGTGCAGCGGCGAGGAGCCCACTGGTTGTTGGACTAACCTATGGTGTGTTCCGGCGAAGCGCCGGGTTGTTGGTAAGGAGCGTGAGCGGGCGGGGGGCTCACACAAGTAAGTGAAGGACCCCTGTAGGGCCTTGAAGAAGTGTGGCCCACACACGGCCAGGGAGGAAAGAAAAGGGAGGGGGATAAGGAGAGCCTTAGCCCTGAGAATCGAATTATAAACCGGCGTGGCGCTGCTGGATGCTTCTGATCAATAGAACAGGAAGAGGAGTCAGCCAAAAAGAAAGACCACCAAAAGTCACGACCACCAAGATACGCATAGTGATTCGATCTTTTGATCACCCATTTTTTGAAAACCATTTTTGGGGGCTTCCGCCTTACACACGGAAGATTGGATTGCCTGAATCACGAGTCAACTATACTGTGTTACGATCACCTCATATTGATAAAAAGTCCAGAGAACAATTTGAAATGGAAATAAAGAAACAATTTCTGGTCATAAAAACAGAAAGGCATGAATTGCGCAAGAAGTTCTTTCGGTTAAAACGCCGTGCGACTCGGAGGACATAA

mRNA sequence

ATGGGGGCTTTCTCGTCTAAAGACAGGGGTGAGCTTTTTCACTATACAATGACCACTACGAACGAAGGACCAACGACGATGAAGGAGGAGAAGGACGGCGAGGAGCCCACTGGTTGTTGGACTAACCTATGGTGTGTTCCGGCGAAGCGCCGGGTTGTTGGTAAGGAGCGTGAGCGGGCGGGGGGCTCACACAAAACAGGAAGAGGAGTCAGCCAAAAAGAAAGACCACCAAAAGTCACGACCACCAAGATACGCATAGTGATTCGATCTTTTGATCACCCATTTTTTGAAAACCATTTTTGGGGGCTTCCGCCTTACACACGGAAGATTGGATTGCCTGAATCACGAGTCAACTATACTGTGTTACGATCACCTCATATTGATAAAAAGTCCAGAGAACAATTTGAAATGGAAATAAAGAAACAATTTCTGGTCATAAAAACAGAAAGGCATGAATTGCGCAAGAAGTTCTTTCGGTTAAAACGCCGTGCGACTCGGAGGACATAA

Coding sequence (CDS)

ATGGGGGCTTTCTCGTCTAAAGACAGGGGTGAGCTTTTTCACTATACAATGACCACTACGAACGAAGGACCAACGACGATGAAGGAGGAGAAGGACGGCGAGGAGCCCACTGGTTGTTGGACTAACCTATGGTGTGTTCCGGCGAAGCGCCGGGTTGTTGGTAAGGAGCGTGAGCGGGCGGGGGGCTCACACAAAACAGGAAGAGGAGTCAGCCAAAAAGAAAGACCACCAAAAGTCACGACCACCAAGATACGCATAGTGATTCGATCTTTTGATCACCCATTTTTTGAAAACCATTTTTGGGGGCTTCCGCCTTACACACGGAAGATTGGATTGCCTGAATCACGAGTCAACTATACTGTGTTACGATCACCTCATATTGATAAAAAGTCCAGAGAACAATTTGAAATGGAAATAAAGAAACAATTTCTGGTCATAAAAACAGAAAGGCATGAATTGCGCAAGAAGTTCTTTCGGTTAAAACGCCGTGCGACTCGGAGGACATAA

Protein sequence

MGAFSSKDRGELFHYTMTTTNEGPTTMKEEKDGEEPTGCWTNLWCVPAKRRVVGKERERAGGSHKTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT

Homology

[Close]

BLAST of Lsi10G006230 vs. ExPASy Swiss-Prot
Match: P51428 (Ribosomal protein S10, mitochondrial OS=Pisum sativum OX=3888 GN=RPS10 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-34
Identity = 74/83 (89.16%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 81  TTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIK 140
           TTKIRIVIRSFDHPF ENHF GLPPYT KIGLPESRV YTVLRSPHIDKKSREQFEMEIK
Sbjct: 2   TTKIRIVIRSFDHPFLENHFGGLPPYTWKIGLPESRVLYTVLRSPHIDKKSREQFEMEIK 61

Query: 141 KQFLVIKTERHELRKKFFRLKRR 164
           K++LVIKTE+HELRKKFF LKR+
Sbjct: 62  KKYLVIKTEKHELRKKFFWLKRQ 84

[Close]

BLAST of Lsi10G006230 vs. ExPASy Swiss-Prot
Match: P42797 (40S ribosomal protein S10, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS10 PE=1 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 5.8e-22
Identity = 59/116 (50.86%), Postives = 74/116 (63.79%), Query Frame = 0


Query: 47  PAKRRVVGKERERAGGSHKTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPY 106
           P  R+ +  ++E A            +E   K+  TKI I IRSF +P  E   W LPP+
Sbjct: 105 PLSRKEIALQKEAA------------EESTSKIKGTKICIAIRSFVNP--EKQAWCLPPH 164

Query: 107 TRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR 163
           TRK+ +P++R  YTVLRSPH+DKKSREQFEM  KK+FLVIK + HEL KK F LKR
Sbjct: 165 TRKVAMPDTRTLYTVLRSPHVDKKSREQFEMRFKKRFLVIKAQSHELSKKLFWLKR 206

[Close]

BLAST of Lsi10G006230 vs. ExPASy Swiss-Prot
Match: P26869 (Ribosomal protein S10, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS10 PE=3 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 2.2e-16
Identity = 52/81 (64.20%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 81  TTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIK 140
           T KI IVI+S     FEN   GL   TRKIGLP+ +  YTVLRSPHIDKKSREQFEM I 
Sbjct: 2   TAKICIVIKS-----FENQRSGLLLNTRKIGLPKKQTLYTVLRSPHIDKKSREQFEMRIH 61

Query: 141 KQFLVIKTERHELRKKFFRLK 162
           KQ LVI+TE H+LR+K   LK
Sbjct: 62  KQLLVIETETHKLREKLNWLK 77

[Close]

BLAST of Lsi10G006230 vs. ExPASy Swiss-Prot
Match: A0LII9 (30S ribosomal protein S10 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) OX=335543 GN=rpsJ PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.9e-07
Identity = 29/76 (38.16%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 79  VTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIG--------LPESRVNYTVLRSPHIDKK 138
           +T  +IRI ++++DH   +     +    +K G        LP     YTVLRSPH+DKK
Sbjct: 2   MTNQRIRIRLKAYDHKLLDQSTSEIVMTAKKTGARVAGPIPLPTKIHRYTVLRSPHVDKK 61

Query: 139 SREQFEMEIKKQFLVI 147
           SREQFE+ + K+ + I
Sbjct: 62  SREQFEIRVHKRLIDI 77

[Close]

BLAST of Lsi10G006230 vs. ExPASy Swiss-Prot
Match: Q6MJ14 (30S ribosomal protein S10 OS=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIMB 9529 / HD100) OX=264462 GN=rpsJ PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 31/72 (43.06%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 83  KIRIVIRSFDHPFFENHFWGLPPYTRKIG--------LPESRVNYTVLRSPHIDKKSREQ 142
           KIRI +++FDH   +     +    R+ G        LP     YTVLRSPH+DKKSREQ
Sbjct: 5   KIRIRLKAFDHKLLDQSTKEIVETARRTGAKVAGPIPLPTRINRYTVLRSPHVDKKSREQ 64

Query: 143 FEMEIKKQFLVI 147
           FE+   K+ L I
Sbjct: 65  FEVRTHKRMLDI 76

[Close]

BLAST of Lsi10G006230 vs. ExPASy TrEMBL
Match: A0A151UHR2 (Ribosomal_S10 domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_047737 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 9.3e-47
Identity = 98/105 (93.33%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 64  HKTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLR 123
           ++TGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHF GLPPYTRKIGLPESRV YTVLR
Sbjct: 5   NRTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHFGGLPPYTRKIGLPESRVLYTVLR 64

Query: 124 SPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT 169
           SPHIDKKSREQFEMEIKK+FL+IKTE+HELRKKFFRLKRRATRRT
Sbjct: 65  SPHIDKKSREQFEMEIKKKFLIIKTEKHELRKKFFRLKRRATRRT 109

[Close]

BLAST of Lsi10G006230 vs. ExPASy TrEMBL
Match: A0A6A5L2R1 (Putative ribosomal protein S10 OS=Lupinus albus OX=3870 GN=Lal_00001786 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.0e-45
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 64  HKTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLR 123
           ++TGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHF GLPPYTRKIGLPESRV YTVLR
Sbjct: 5   NRTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHFGGLPPYTRKIGLPESRVLYTVLR 64

Query: 124 SPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT 169
           SPHIDKKSREQFEMEIKK+ LVIKTE HELRKKFFRLKRRATRRT
Sbjct: 65  SPHIDKKSREQFEMEIKKKVLVIKTETHELRKKFFRLKRRATRRT 109

[Close]

BLAST of Lsi10G006230 vs. ExPASy TrEMBL
Match: A0A1J7GJX4 (Ribosomal_S10 domain-containing protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_00358 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.0e-45
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 64  HKTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLR 123
           ++TGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHF GLPPYTRKIGLPESRV YTVLR
Sbjct: 5   NRTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHFGGLPPYTRKIGLPESRVLYTVLR 64

Query: 124 SPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT 169
           SPHIDKKSREQFEMEIKK+ LVIKTE HELRKKFFRLKRRATRRT
Sbjct: 65  SPHIDKKSREQFEMEIKKKVLVIKTETHELRKKFFRLKRRATRRT 109

[Close]

BLAST of Lsi10G006230 vs. ExPASy TrEMBL
Match: A0A7H1CQT7 (Ribosomal protein S10 OS=Sapindus mukorossi OX=57655 GN=rps10 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.0e-45
Identity = 99/105 (94.29%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 64  HKTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLR 123
           ++TGRGVSQKERPPKVTTTKIRIVIRSFDHPF EN F GLPPYTRKIGLPESRV YTVLR
Sbjct: 5   NRTGRGVSQKERPPKVTTTKIRIVIRSFDHPFLENLFLGLPPYTRKIGLPESRVLYTVLR 64

Query: 124 SPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT 169
           SPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT
Sbjct: 65  SPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT 109

[Close]

BLAST of Lsi10G006230 vs. ExPASy TrEMBL
Match: A0A5C2FRB4 (Ribosomal protein S10 OS=Spondias mombin OX=80338 GN=rps10 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.0e-45
Identity = 99/105 (94.29%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 64  HKTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLR 123
           ++TGRGVSQKERPPKVTTTKIRIVIRSFDHPFFEN  WGLPPYTRKIGLPESRV YTVLR
Sbjct: 5   NRTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFEN--WGLPPYTRKIGLPESRVLYTVLR 64

Query: 124 SPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT 169
           SPHIDKKSREQFEMEIKK+FLVIKTERHELRKKFFRLKRRATRRT
Sbjct: 65  SPHIDKKSREQFEMEIKKEFLVIKTERHELRKKFFRLKRRATRRT 107

[Close]

BLAST of Lsi10G006230 vs. NCBI nr
Match: QVJ97849.1 (hypothetical protein [Apium graveolens] >QVJ97891.1 hypothetical protein [Apium graveolens] >QVJ97989.1 hypothetical protein [Apium graveolens])

HSP 1 Score: 199.9 bits (507), Expect = 1.7e-47
Identity = 101/105 (96.19%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 64  HKTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLR 123
           +KTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFEN FWGLPPYTRKIGLPESRV YTVLR
Sbjct: 5   NKTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENPFWGLPPYTRKIGLPESRVLYTVLR 64

Query: 124 SPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT 169
           SPHIDKKSREQFEMEIKKQFLVIK ERHELRKKFFRLKRRATRRT
Sbjct: 65  SPHIDKKSREQFEMEIKKQFLVIKAERHELRKKFFRLKRRATRRT 109

[Close]

BLAST of Lsi10G006230 vs. NCBI nr
Match: DAD25546.1 (TPA_asm: hypothetical protein HUJ06_027010 [Nelumbo nucifera] >DAD25622.1 TPA_asm: hypothetical protein HUJ06_027086 [Nelumbo nucifera])

HSP 1 Score: 197.6 bits (501), Expect = 8.6e-47
Identity = 99/105 (94.29%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 64  HKTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLR 123
           ++TGRGVSQKE PPKVTTTKIRIVIRSFDHPF ENHFWGLPPYTRKIGLPESRV YTVLR
Sbjct: 5   NRTGRGVSQKETPPKVTTTKIRIVIRSFDHPFLENHFWGLPPYTRKIGLPESRVLYTVLR 64

Query: 124 SPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT 169
           SPHIDKKSREQFEMEIKKQFLVIKTE HELRKKFFRLKRRATRRT
Sbjct: 65  SPHIDKKSREQFEMEIKKQFLVIKTETHELRKKFFRLKRRATRRT 109

[Close]

BLAST of Lsi10G006230 vs. NCBI nr
Match: KYP31509.1 (hypothetical protein KK1_048135 [Cajanus cajan] >KYP78771.1 hypothetical protein KK1_047737 [Cajanus cajan])

HSP 1 Score: 196.4 bits (498), Expect = 1.9e-46
Identity = 98/105 (93.33%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 64  HKTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLR 123
           ++TGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHF GLPPYTRKIGLPESRV YTVLR
Sbjct: 5   NRTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHFGGLPPYTRKIGLPESRVLYTVLR 64

Query: 124 SPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT 169
           SPHIDKKSREQFEMEIKK+FL+IKTE+HELRKKFFRLKRRATRRT
Sbjct: 65  SPHIDKKSREQFEMEIKKKFLIIKTEKHELRKKFFRLKRRATRRT 109

[Close]

BLAST of Lsi10G006230 vs. NCBI nr
Match: YP_009935535.1 (ribosomal protein S10 [Sapindus mukorossi] >QNS26095.1 ribosomal protein S10 [Sapindus mukorossi])

HSP 1 Score: 193.0 bits (489), Expect = 2.1e-45
Identity = 99/105 (94.29%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 64  HKTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLR 123
           ++TGRGVSQKERPPKVTTTKIRIVIRSFDHPF EN F GLPPYTRKIGLPESRV YTVLR
Sbjct: 5   NRTGRGVSQKERPPKVTTTKIRIVIRSFDHPFLENLFLGLPPYTRKIGLPESRVLYTVLR 64

Query: 124 SPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT 169
           SPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT
Sbjct: 65  SPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT 109

[Close]

BLAST of Lsi10G006230 vs. NCBI nr
Match: KAE9584349.1 (putative ribosomal protein S10 [Lupinus albus] >KAF1856884.1 hypothetical protein Lal_00001786 [Lupinus albus] >OIV89980.1 hypothetical protein TanjilG_00358 [Lupinus angustifolius] >OIV97119.1 hypothetical protein TanjilG_04923 [Lupinus angustifolius])

HSP 1 Score: 193.0 bits (489), Expect = 2.1e-45
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 64  HKTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPESRVNYTVLR 123
           ++TGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHF GLPPYTRKIGLPESRV YTVLR
Sbjct: 5   NRTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHFGGLPPYTRKIGLPESRVLYTVLR 64

Query: 124 SPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRATRRT 169
           SPHIDKKSREQFEMEIKK+ LVIKTE HELRKKFFRLKRRATRRT
Sbjct: 65  SPHIDKKSREQFEMEIKKKVLVIKTETHELRKKFFRLKRRATRRT 109

[Close]

BLAST of Lsi10G006230 vs. TAIR 10
Match: AT3G22300.1 (ribosomal protein S10 )

HSP 1 Score: 105.5 bits (262), Expect = 4.2e-23
Identity = 59/116 (50.86%), Postives = 74/116 (63.79%), Query Frame = 0


Query: 47  PAKRRVVGKERERAGGSHKTGRGVSQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPY 106
           P  R+ +  ++E A            +E   K+  TKI I IRSF +P  E   W LPP+
Sbjct: 105 PLSRKEIALQKEAA------------EESTSKIKGTKICIAIRSFVNP--EKQAWCLPPH 164

Query: 107 TRKIGLPESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR 163
           TRK+ +P++R  YTVLRSPH+DKKSREQFEM  KK+FLVIK + HEL KK F LKR
Sbjct: 165 TRKVAMPDTRTLYTVLRSPHVDKKSREQFEMRFKKRFLVIKAQSHELSKKLFWLKR 206

The following BLAST results are available for this feature:

BLAST of Lsi10G006230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51428	1.3e-34	89.16	Ribosomal protein S10, mitochondrial OS=Pisum sativum OX=3888 GN=RPS10 PE=2 SV=1	[more]
P42797	5.8e-22	50.86	40S ribosomal protein S10, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
P26869	2.2e-16	64.20	Ribosomal protein S10, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS10 P...	[more]
A0LII9	6.9e-07	38.16	30S ribosomal protein S10 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MP...	[more]
Q6MJ14	1.2e-06	43.06	30S ribosomal protein S10 OS=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM...	[more]

BLAST of Lsi10G006230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A151UHR2	9.3e-47	93.33	Ribosomal_S10 domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_047737 P...	[more]
A0A6A5L2R1	1.0e-45	93.33	Putative ribosomal protein S10 OS=Lupinus albus OX=3870 GN=Lal_00001786 PE=3 SV=...	[more]
A0A1J7GJX4	1.0e-45	93.33	Ribosomal_S10 domain-containing protein OS=Lupinus angustifolius OX=3871 GN=Tanj...	[more]
A0A7H1CQT7	1.0e-45	94.29	Ribosomal protein S10 OS=Sapindus mukorossi OX=57655 GN=rps10 PE=3 SV=1	[more]
A0A5C2FRB4	1.0e-45	94.29	Ribosomal protein S10 OS=Spondias mombin OX=80338 GN=rps10 PE=3 SV=1	[more]

BLAST of Lsi10G006230 vs. NCBI nr


Match Name	E-value	Identity	Description
QVJ97849.1	1.7e-47	96.19	hypothetical protein [Apium graveolens] >QVJ97891.1 hypothetical protein [Apium ...	[more]
DAD25546.1	8.6e-47	94.29	TPA_asm: hypothetical protein HUJ06_027010 [Nelumbo nucifera] >DAD25622.1 TPA_as...	[more]
KYP31509.1	1.9e-46	93.33	hypothetical protein KK1_048135 [Cajanus cajan] >KYP78771.1 hypothetical protein...	[more]
YP_009935535.1	2.1e-45	94.29	ribosomal protein S10 [Sapindus mukorossi] >QNS26095.1 ribosomal protein S10 [Sa...	[more]
KAE9584349.1	2.1e-45	93.33	putative ribosomal protein S10 [Lupinus albus] >KAF1856884.1 hypothetical protei...	[more]

BLAST of Lsi10G006230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22300.1	4.2e-23	50.86	ribosomal protein S10	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001848	Ribosomal protein S10	PRINTS	PR00971	RIBOSOMALS10	coord: 83..96 score: 36.68 coord: 110..125 score: 45.67 coord: 131..145 score: 39.87
IPR001848	Ribosomal protein S10	PANTHER	PTHR11700	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	coord: 64..163
IPR027486	Ribosomal protein S10 domain	SMART	SM01403	Ribosomal_S10_2	coord: 85..161 e-value: 3.8E-4 score: 29.8
IPR027486	Ribosomal protein S10 domain	PFAM	PF00338	Ribosomal_S10	coord: 110..159 e-value: 2.6E-10 score: 40.4
IPR036838	Ribosomal protein S10 domain superfamily	GENE3D	3.30.70.600	Ribosomal protein S10 domain	coord: 69..165 e-value: 5.0E-14 score: 54.3
IPR036838	Ribosomal protein S10 domain superfamily	SUPERFAMILY	54999	Ribosomal protein S10	coord: 83..161
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..72
None	No IPR available	PANTHER	PTHR11700:SF7	40S RIBOSOMAL PROTEIN S10, MITOCHONDRIAL	coord: 64..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G006230.1	Lsi10G006230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome