Lsi10G006170 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G006170
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	ribosomal protein L5
Location	chr10: 8691812 .. 8692843 (-)
RNA-Seq Expression	Lsi10G006170
Synteny	Lsi10G006170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTGAATCACCCAGATCTTGAATCAACTAGTGGATCATCAAATCAACACAAGGACCCAATGCATTCTCCAGATGAGTTGGGAGCTGGGGCAGCCCGCGCGCGACCCATACCAATCCTGCACTCCTTTCTCCTATTCTTTCTTTGCACTTCTTGGAAATCACGAAGAAGATTCCCGGACTGGACTGAGCGGGAGGGGAGCTGCTGTCGGTATTGGAAACGTGTTCAGTTCTTTGATCCATTCTGTGGCGTGAAATCCATCATTGGCTAAACAATCATTTGGTTATGTCATTTTGGGCTTTTGCTCTAACCGAAGCTATTGCATTGTTTGCTCCAATGATGGCCTTTTTGATCTCATCCGTATTCCGATGGAAAAAAAGAAAGAAGGTTTCCGTTTCATTCAACCAACTATCTTTTTGAAGCAGATAGTTCACAGTGCTCATTCTATAGATACTGTGTAAAAAAGCCAACTCATGTTTTCACTCGATTTTCATTACGAAGATGTATCATGTCAGGATCCGTTGCTCAAACTGAATGACGCCAACGTTATGGAAGTTCCTGGATCGTGTGAAATAAGAGTCGTACCAAAGGCACCCTATGATTTCATAATCCAAAATGGAAAATTGCCTATGGAGATTCCGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCGACAGGAAAGTCGTTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGACAAAGCACTCTTCGAGGGCATGGAATGTCGAATTTTTCGGTCAGAATCTCGACAGTAATGTCTCTCTTAGATTCTCCAGTTGAAATACGGGAAAACTCCATTCAATTCTTGATGGAAACGGAGTTTTGCGAATTATCCCCGGAACTGGAAGATCATTTCGAGATCTTCGAACATATTCTAGGGTTCAATGTGACTATTGTCACTTCGGCCAACACACAAGATGAGATTTTACCACCGTGGAGCGGCTTTTTGCAAAAAGATGAGGGGGAAACTCAGTAA

mRNA sequence

ATGGGGACCCAATGCATTCTCCAGATGAGTTGGGAGCTGGGGCAGCCCGCGCGCGACCCATACCAATCCTGCACTCCTTTCTCCTATTCTTTCTTTGCACTTCTTGGAAATCACGAAGAAGATTCCCGGACTGGACTGAGCGGGAGGGGAGCTGCTGTCGGTATTGGAAACGATCCGTTGCTCAAACTGAATGACGCCAACGTTATGGAAGTTCCTGGATCGTGTGAAATAAGAGTCGTACCAAAGGCACCCTATGATTTCATAATCCAAAATGGAAAATTGCCTATGGAGATTCCGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCGACAGGAAAGTCGTTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGACAAAGCACTCTTCGAGGGCATGGAATGTCGAATTTTTCGGTCAGAATCTCGACAGTAATGTCTCTCTTAGATTCTCCAGTTGAAATACGGGAAAACTCCATTCAATTCTTGATGGAAACGGAGTTTTGCGAATTATCCCCGGAACTGGAAGATCATTTCGAGATCTTCGAACATATTCTAGGGTTCAATGTGACTATTGTCACTTCGGCCAACACACAAGATGAGATTTTACCACCGTGGAGCGGCTTTTTGCAAAAAGATGAGGGGGAAACTCAGTAA

Coding sequence (CDS)

ATGGGGACCCAATGCATTCTCCAGATGAGTTGGGAGCTGGGGCAGCCCGCGCGCGACCCATACCAATCCTGCACTCCTTTCTCCTATTCTTTCTTTGCACTTCTTGGAAATCACGAAGAAGATTCCCGGACTGGACTGAGCGGGAGGGGAGCTGCTGTCGGTATTGGAAACGATCCGTTGCTCAAACTGAATGACGCCAACGTTATGGAAGTTCCTGGATCGTGTGAAATAAGAGTCGTACCAAAGGCACCCTATGATTTCATAATCCAAAATGGAAAATTGCCTATGGAGATTCCGCGCGGTCAGAAATTTATACAGACACAAAGGGGTTCGACAGGAAAGTCGTTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGACCTAGCACGACAAAGCACTCTTCGAGGGCATGGAATGTCGAATTTTTCGGTCAGAATCTCGACAGTAATGTCTCTCTTAGATTCTCCAGTTGAAATACGGGAAAACTCCATTCAATTCTTGATGGAAACGGAGTTTTGCGAATTATCCCCGGAACTGGAAGATCATTTCGAGATCTTCGAACATATTCTAGGGTTCAATGTGACTATTGTCACTTCGGCCAACACACAAGATGAGATTTTACCACCGTGGAGCGGCTTTTTGCAAAAAGATGAGGGGGAAACTCAGTAA

Protein sequence

MGTQCILQMSWELGQPARDPYQSCTPFSYSFFALLGNHEEDSRTGLSGRGAAVGIGNDPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ

Homology

[Close]

BLAST of Lsi10G006170 vs. ExPASy Swiss-Prot
Match: P42793 (60S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL5 PE=1 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.2e-80
Identity = 152/171 (88.89%), Postives = 156/171 (91.23%), Query Frame = 0


Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           D LLKLN ANVMEVPG CEIRVVPKAPY+FII+NGKL MEIP GQKFIQTQRGSTGKSFR
Sbjct: 15  DLLLKLNYANVMEVPGLCEIRVVPKAPYNFIIKNGKLAMEIPCGQKFIQTQRGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFL SNKDKGYVSDLARQSTLRGHGMSNF VRI TVMSLLD PVEIR+NSIQF METE
Sbjct: 75  SNPFLGSNKDKGYVSDLARQSTLRGHGMSNFLVRILTVMSLLDFPVEIRKNSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCE SPELEDHFEIFEHI GFNVTI+TSANTQDE L  WSGFLQKDEGETQ
Sbjct: 135 FCEFSPELEDHFEIFEHIRGFNVTIITSANTQDETLLLWSGFLQKDEGETQ 185

[Close]

BLAST of Lsi10G006170 vs. ExPASy Swiss-Prot
Match: P49388 (60S ribosomal protein L5, mitochondrial OS=Brassica napus OX=3708 GN=RPL5 PE=3 SV=2)

HSP 1 Score: 289.3 bits (739), Expect = 3.9e-77
Identity = 144/171 (84.21%), Postives = 152/171 (88.89%), Query Frame = 0


Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           DPLL      + +  GSCEIRVVP  PY+FII+NGKL MEIPRGQKFIQTQRGSTGKSFR
Sbjct: 15  DPLLNRITPTLWKFLGSCEIRVVPNGPYNFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFL SNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLD PVEIR+NSIQF METE
Sbjct: 75  SNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDFPVEIRKNSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCE +P+L+DHFEIFEHI GFNVTIVTSANTQDE LP WSGFLQKDEGETQ
Sbjct: 135 FCEFAPQLQDHFEIFEHIRGFNVTIVTSANTQDETLPLWSGFLQKDEGETQ 185

[Close]

BLAST of Lsi10G006170 vs. ExPASy Swiss-Prot
Match: Q05492 (60S ribosomal protein L5, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPL5 PE=2 SV=2)

HSP 1 Score: 284.6 bits (727), Expect = 9.5e-76
Identity = 148/172 (86.05%), Postives = 153/172 (88.95%), Query Frame = 0


Query: 58  DPLLKLNDANVMEVPGSCEIRVVPK--APYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKS 117
           D LLKLN ANVMEVPG CEIR+VPK  + YDFII+NGKL MEI RGQKFIQT+RGSTGKS
Sbjct: 15  DLLLKLNLANVMEVPGLCEIRIVPKTSSTYDFIIKNGKLAMEILRGQKFIQTERGSTGKS 74

Query: 118 FRSNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLME 177
           FRSNPFLESNKDKGYVSDLARQS LRGHGMSNF VRI TVMSLLDS VEIRENSIQF ME
Sbjct: 75  FRSNPFLESNKDKGYVSDLARQSILRGHGMSNFLVRILTVMSLLDSRVEIRENSIQFSME 134

Query: 178 TEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGET 228
           TEFCE SPELEDHFEIFEHI  FNVTIVTSANTQDE L  WSGFLQKDEGE+
Sbjct: 135 TEFCEFSPELEDHFEIFEHIRRFNVTIVTSANTQDETLLLWSGFLQKDEGES 186

[Close]

BLAST of Lsi10G006170 vs. ExPASy Swiss-Prot
Match: P51409 (60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum OX=4113 GN=RPL5 PE=2 SV=2)

HSP 1 Score: 255.4 bits (651), Expect = 6.2e-67
Identity = 142/173 (82.08%), Postives = 146/173 (84.39%), Query Frame = 0


Query: 58  DPLLKLNDANVMEVPGSCEIRVVPK-APYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSF 117
           D LLKLN ANVMEVPG C+I VVPK AP    I+NGKL MEI  GQK    QR STGKSF
Sbjct: 19  DLLLKLNYANVMEVPGLCKIIVVPKTAP---SIKNGKLAMEISCGQKL--KQRASTGKSF 78

Query: 118 RSNPFLESNKD-KGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLME 177
           RSNPFL SNKD KGYVSDLARQSTLRGHGMS+F VRISTVMSLLDSP+EIRE SIQF ME
Sbjct: 79  RSNPFLGSNKDKKGYVSDLARQSTLRGHGMSHFLVRISTVMSLLDSPLEIRERSIQFSME 138

Query: 178 TEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           TEFCE SPELEDHFEIFEHI GFNVTIVTSANTQDE L  WSGFLQKDEGETQ
Sbjct: 139 TEFCEFSPELEDHFEIFEHIRGFNVTIVTSANTQDETLLLWSGFLQKDEGETQ 186

[Close]

BLAST of Lsi10G006170 vs. ExPASy Swiss-Prot
Match: P26860 (60S ribosomal protein L5, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL5 PE=3 SV=2)

HSP 1 Score: 190.3 bits (482), Expect = 2.4e-47
Identity = 107/170 (62.94%), Postives = 128/170 (75.29%), Query Frame = 0


Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQ-RGSTGKSF 117
           D LLK+N  N+MEVP  C+I VVPKAP +F I+N KL MEI  GQKFIQT+ RGSTGKSF
Sbjct: 20  DLLLKINYENIMEVPRLCKIIVVPKAPSNF-IKNVKLAMEIVCGQKFIQTRSRGSTGKSF 79

Query: 118 RSNPFL---ESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFL 177
           R N F+   ES +D GYV+ LAR STLRGH M NF  ++ T++S  D PV+I++NSIQ  
Sbjct: 80  RFNKFVLNQESKRDTGYVTYLAR-STLRGHIMYNFLEKLVTIISFYDYPVKIQKNSIQLS 139

Query: 178 METEFCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKD 224
           M T    L PE++DHFEIFEHI GF+VTIVTSANTQDE +  WSGFLQK+
Sbjct: 140 MATSLLRLFPEIQDHFEIFEHIRGFDVTIVTSANTQDETVILWSGFLQKE 187

[Close]

BLAST of Lsi10G006170 vs. ExPASy TrEMBL
Match: A0A7J6DWT2 (ATP-synt_C domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_002331 PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.3e-88
Identity = 185/279 (66.31%), Postives = 188/279 (67.38%), Query Frame = 0


Query: 33  ALLGNHEEDSRTGLSGRGAAVGIGN----------------------------------- 92
           +LLGNHEEDSRTGLSGRGAAVGIGN                                   
Sbjct: 61  SLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQLFGYAIFGFALTEAIAI 120

Query: 93  ------------------------------------------------DPLLKLNDANVM 152
                                                           DPLLK N ANVM
Sbjct: 121 LCPLLRKLKFHSYNYLFEADSSQCSFYRYCKSQLMFPLYFHYEDVSRQDPLLKPNHANVM 180

Query: 153 EVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFRSNPFLESNKDKG 212
           EVPGSCEIRVVPKAPYDFII+NGKL MEIPRGQKFIQT+RGSTGKSFRSNPFL SNKDKG
Sbjct: 181 EVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTERGSTGKSFRSNPFLGSNKDKG 240

Query: 213 YVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETEFCELSPELEDHF 229
           YVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQF METEFCE SPELEDHF
Sbjct: 241 YVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETEFCEFSPELEDHF 300

[Close]

BLAST of Lsi10G006170 vs. ExPASy TrEMBL
Match: A0A7D5Y005 (Ribosomal protein L5 OS=Luffa acutangula OX=56866 GN=rpl5 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 6.6e-88
Identity = 165/171 (96.49%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           DPLLKLN ANVMEVPGSCEIRVVPKAPYDFII+NGKL MEIPRGQKFIQTQRGSTGKSFR
Sbjct: 15  DPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQF METE
Sbjct: 75  SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCE SPELEDHFEIFEHILGFNVTIVTSANTQDE LPPWSGFLQKDEGETQ
Sbjct: 135 FCEFSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGETQ 185

[Close]

BLAST of Lsi10G006170 vs. ExPASy TrEMBL
Match: A0A6B9QFQ7 (Ribosomal protein L5 OS=Castanospermum australe OX=24962 GN=rpl5 PE=3 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 7.3e-87
Identity = 164/171 (95.91%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           DPLLKLN ANVMEVPGSCEIRVVPKAPYDFII+NGKL MEIPRGQKFIQTQRGSTGKSFR
Sbjct: 15  DPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFL SNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQF METE
Sbjct: 75  SNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCELSPELEDHFEIFEHI GFNVTIVTSANTQDE LPPWSGFLQKDEGETQ
Sbjct: 135 FCELSPELEDHFEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDEGETQ 185

[Close]

BLAST of Lsi10G006170 vs. ExPASy TrEMBL
Match: A0A371IEM9 (60S ribosomal protein L5, mitochondrial (Fragment) OS=Mucuna pruriens OX=157652 GN=RPL5 PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 2.1e-86
Identity = 163/171 (95.32%), Postives = 164/171 (95.91%), Query Frame = 0


Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           DPLLKLN ANVMEVPGSCEIRVVPKAPYDFII+NGKL MEIPRGQKFIQTQRGSTGKSFR
Sbjct: 40  DPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFR 99

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFL SNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQF METE
Sbjct: 100 SNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETE 159

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCE SPELEDHFEIFEHI GFNVTIVTSANTQDE LPPWSGFLQKDEGETQ
Sbjct: 160 FCEFSPELEDHFEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDEGETQ 210

[Close]

BLAST of Lsi10G006170 vs. ExPASy TrEMBL
Match: A0A386JNB1 (Ribosomal protein L5 OS=Glycine soja OX=3848 GN=rpl5 PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 2.1e-86
Identity = 163/171 (95.32%), Postives = 164/171 (95.91%), Query Frame = 0


Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           DPLLKLN ANVMEVPGSCEIRVVPKAPYDFII+NGKL MEIPRGQKFIQTQRGSTGKSFR
Sbjct: 15  DPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFL SNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQF METE
Sbjct: 75  SNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCE SPELEDHFEIFEHI GFNVTIVTSANTQDE LPPWSGFLQKDEGETQ
Sbjct: 135 FCEFSPELEDHFEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDEGETQ 185

[Close]

BLAST of Lsi10G006170 vs. NCBI nr
Match: KAF4349909.1 (hypothetical protein G4B88_002331 [Cannabis sativa])

HSP 1 Score: 335.9 bits (860), Expect = 2.8e-88
Identity = 185/279 (66.31%), Postives = 188/279 (67.38%), Query Frame = 0


Query: 33  ALLGNHEEDSRTGLSGRGAAVGIGN----------------------------------- 92
           +LLGNHEEDSRTGLSGRGAAVGIGN                                   
Sbjct: 61  SLLGNHEEDSRTGLSGRGAAVGIGNVFSSLIHSVARNPSLAKQLFGYAIFGFALTEAIAI 120

Query: 93  ------------------------------------------------DPLLKLNDANVM 152
                                                           DPLLK N ANVM
Sbjct: 121 LCPLLRKLKFHSYNYLFEADSSQCSFYRYCKSQLMFPLYFHYEDVSRQDPLLKPNHANVM 180

Query: 153 EVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFRSNPFLESNKDKG 212
           EVPGSCEIRVVPKAPYDFII+NGKL MEIPRGQKFIQT+RGSTGKSFRSNPFL SNKDKG
Sbjct: 181 EVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTERGSTGKSFRSNPFLGSNKDKG 240

Query: 213 YVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETEFCELSPELEDHF 229
           YVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQF METEFCE SPELEDHF
Sbjct: 241 YVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETEFCEFSPELEDHF 300

[Close]

BLAST of Lsi10G006170 vs. NCBI nr
Match: KAF3452179.1 (hypothetical protein FNV43_RR08277 [Rhamnella rubrinervis])

HSP 1 Score: 335.1 bits (858), Expect = 4.7e-88
Identity = 183/264 (69.32%), Postives = 185/264 (70.08%), Query Frame = 0


Query: 33  ALLGNHEEDSRTGLSGRGAAVGIGN----------------------------------- 92
           +LLGNHEEDSRTGLSGRGAAVGIGN                                   
Sbjct: 134 SLLGNHEEDSRTGLSGRGAAVGIGNVLSSLIHSVARNPSLAKQSFGYAILGFALTEAIAS 193

Query: 93  -----------------------------------DPLLKLNDANVMEVPGSCEIRVVPK 152
                                              DPLLK N ANVMEVPGSCEIRVVPK
Sbjct: 194 FASFFANSSQCSFYRKSKSHLMFPLHFHYEDVSRQDPLLKPNHANVMEVPGSCEIRVVPK 253

Query: 153 APYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRG 212
           APYDFII+NGKL MEIPRGQKFIQTQRGSTGKSFRSN FL SNKDKGYVSDLARQSTLRG
Sbjct: 254 APYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFRSNQFLGSNKDKGYVSDLARQSTLRG 313

Query: 213 HGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETEFCELSPELEDHFEIFEHILGFNVTI 227
           HGMSNFSVRISTVMSLLDSPVEIRENSIQF METEFCE SPELEDHFEIFEHI GFNVTI
Sbjct: 314 HGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETEFCEFSPELEDHFEIFEHIRGFNVTI 373

[Close]

BLAST of Lsi10G006170 vs. NCBI nr
Match: YP_009913650.1 (ribosomal protein L5 [Luffa acutangula] >QLJ93020.1 ribosomal protein L5 [Luffa acutangula])

HSP 1 Score: 333.6 bits (854), Expect = 1.4e-87
Identity = 165/171 (96.49%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           DPLLKLN ANVMEVPGSCEIRVVPKAPYDFII+NGKL MEIPRGQKFIQTQRGSTGKSFR
Sbjct: 15  DPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQF METE
Sbjct: 75  SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCE SPELEDHFEIFEHILGFNVTIVTSANTQDE LPPWSGFLQKDEGETQ
Sbjct: 135 FCEFSPELEDHFEIFEHILGFNVTIVTSANTQDETLPPWSGFLQKDEGETQ 185

[Close]

BLAST of Lsi10G006170 vs. NCBI nr
Match: QHE65829.1 (ribosomal protein L5 [Castanospermum australe])

HSP 1 Score: 330.1 bits (845), Expect = 1.5e-86
Identity = 164/171 (95.91%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           DPLLKLN ANVMEVPGSCEIRVVPKAPYDFII+NGKL MEIPRGQKFIQTQRGSTGKSFR
Sbjct: 15  DPLLKLNHANVMEVPGSCEIRVVPKAPYDFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFL SNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQF METE
Sbjct: 75  SNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCELSPELEDHFEIFEHI GFNVTIVTSANTQDE LPPWSGFLQKDEGETQ
Sbjct: 135 FCELSPELEDHFEIFEHIRGFNVTIVTSANTQDETLPPWSGFLQKDEGETQ 185

[Close]

BLAST of Lsi10G006170 vs. NCBI nr
Match: KAG4918003.1 (hypothetical protein JHK85_056284 [Glycine max] >KAG4936248.1 hypothetical protein JHK85_051167 [Glycine max] >KAG5076077.1 hypothetical protein JHK82_057419 [Glycine max])

HSP 1 Score: 329.3 bits (843), Expect = 2.6e-86
Identity = 169/199 (84.92%), Postives = 171/199 (85.93%), Query Frame = 0


Query: 30  SFFALLGNHEEDSRTGLSGRGAAVGIGNDPLLKLNDANVMEVPGSCEIRVVPKAPYDFII 89
           S   LL   E+    GL           DPLLKLN ANVMEVPGSCEIRVVPKAPYDFII
Sbjct: 125 SLSKLLRMREDLQTAGLQSATFRQLADRDPLLKLNHANVMEVPGSCEIRVVPKAPYDFII 184

Query: 90  QNGKLPMEIPRGQKFIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMSNFS 149
           +NGKL MEIPRGQKFIQTQRGSTGKSFRSNPFL SNKDKGYVSDLARQSTLRGHGMSNFS
Sbjct: 185 KNGKLAMEIPRGQKFIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFS 244

Query: 150 VRISTVMSLLDSPVEIRENSIQFLMETEFCELSPELEDHFEIFEHILGFNVTIVTSANTQ 209
           VRISTVMSLLDSPVEIRENSIQF METEFCE SPELEDHFEIFEHI GFNVTIVTSANTQ
Sbjct: 245 VRISTVMSLLDSPVEIRENSIQFSMETEFCEFSPELEDHFEIFEHIRGFNVTIVTSANTQ 304

Query: 210 DEILPPWSGFLQKDEGETQ 229
           DE LPPWSGFLQKDEGETQ
Sbjct: 305 DETLPPWSGFLQKDEGETQ 323

[Close]

BLAST of Lsi10G006170 vs. TAIR 10
Match: AT2G07725.1 (Ribosomal L5P family protein )

HSP 1 Score: 315.8 bits (808), Expect = 2.7e-86
Identity = 157/171 (91.81%), Postives = 161/171 (94.15%), Query Frame = 0


Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           DPLLK N ANVMEVPGSCEIRVVPKAPY+FII+NGKL MEIPRGQKFIQTQRGSTGKSFR
Sbjct: 15  DPLLKPNHANVMEVPGSCEIRVVPKAPYNFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFL SNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLD PVEIR+NSIQF METE
Sbjct: 75  SNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDFPVEIRKNSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCE SPELEDHFEIFEHI GFNVTI+TSANTQDE LP WSGFLQKDEGETQ
Sbjct: 135 FCEFSPELEDHFEIFEHIRGFNVTIITSANTQDETLPLWSGFLQKDEGETQ 185

[Close]

BLAST of Lsi10G006170 vs. TAIR 10
Match: ATMG00210.1 (ribosomal protein L5 )

HSP 1 Score: 315.8 bits (808), Expect = 2.7e-86
Identity = 157/171 (91.81%), Postives = 161/171 (94.15%), Query Frame = 0


Query: 58  DPLLKLNDANVMEVPGSCEIRVVPKAPYDFIIQNGKLPMEIPRGQKFIQTQRGSTGKSFR 117
           DPLLK N ANVMEVPGSCEIRVVPKAPY+FII+NGKL MEIPRGQKFIQTQRGSTGKSFR
Sbjct: 15  DPLLKPNHANVMEVPGSCEIRVVPKAPYNFIIKNGKLAMEIPRGQKFIQTQRGSTGKSFR 74

Query: 118 SNPFLESNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDSPVEIRENSIQFLMETE 177
           SNPFL SNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLD PVEIR+NSIQF METE
Sbjct: 75  SNPFLGSNKDKGYVSDLARQSTLRGHGMSNFSVRISTVMSLLDFPVEIRKNSIQFSMETE 134

Query: 178 FCELSPELEDHFEIFEHILGFNVTIVTSANTQDEILPPWSGFLQKDEGETQ 229
           FCE SPELEDHFEIFEHI GFNVTI+TSANTQDE LP WSGFLQKDEGETQ
Sbjct: 135 FCEFSPELEDHFEIFEHIRGFNVTIITSANTQDETLPLWSGFLQKDEGETQ 185

The following BLAST results are available for this feature:

BLAST of Lsi10G006170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42793	2.2e-80	88.89	60S ribosomal protein L5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL5 ...	[more]
P49388	3.9e-77	84.21	60S ribosomal protein L5, mitochondrial OS=Brassica napus OX=3708 GN=RPL5 PE=3 S...	[more]
Q05492	9.5e-76	86.05	60S ribosomal protein L5, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPL5 ...	[more]
P51409	6.2e-67	82.08	60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum OX=4113 GN=RPL5 PE=...	[more]
P26860	2.4e-47	62.94	60S ribosomal protein L5, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL5...	[more]

BLAST of Lsi10G006170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6DWT2	1.3e-88	66.31	ATP-synt_C domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_002331 ...	[more]
A0A7D5Y005	6.6e-88	96.49	Ribosomal protein L5 OS=Luffa acutangula OX=56866 GN=rpl5 PE=3 SV=1	[more]
A0A6B9QFQ7	7.3e-87	95.91	Ribosomal protein L5 OS=Castanospermum australe OX=24962 GN=rpl5 PE=3 SV=1	[more]
A0A371IEM9	2.1e-86	95.32	60S ribosomal protein L5, mitochondrial (Fragment) OS=Mucuna pruriens OX=157652 ...	[more]
A0A386JNB1	2.1e-86	95.32	Ribosomal protein L5 OS=Glycine soja OX=3848 GN=rpl5 PE=3 SV=1	[more]

BLAST of Lsi10G006170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4349909.1	2.8e-88	66.31	hypothetical protein G4B88_002331 [Cannabis sativa]	[more]
KAF3452179.1	4.7e-88	69.32	hypothetical protein FNV43_RR08277 [Rhamnella rubrinervis]	[more]
YP_009913650.1	1.4e-87	96.49	ribosomal protein L5 [Luffa acutangula] >QLJ93020.1 ribosomal protein L5 [Luffa ...	[more]
QHE65829.1	1.5e-86	95.91	ribosomal protein L5 [Castanospermum australe]	[more]
KAG4918003.1	2.6e-86	84.92	hypothetical protein JHK85_056284 [Glycine max] >KAG4936248.1 hypothetical prote...	[more]

BLAST of Lsi10G006170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07725.1	2.7e-86	91.81	Ribosomal L5P family protein	[more]
ATMG00210.1	2.7e-86	91.81	ribosomal protein L5	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022803	Ribosomal protein L5 domain superfamily	GENE3D	3.30.1440.10		coord: 55..221 e-value: 1.1E-16 score: 62.9
IPR022803	Ribosomal protein L5 domain superfamily	SUPERFAMILY	55282	RL5-like	coord: 57..220
IPR002132	Ribosomal protein L5	PANTHER	PTHR11994	60S RIBOSOMAL PROTEIN L11-RELATED	coord: 59..223
None	No IPR available	PANTHER	PTHR11994:SF11	60S RIBOSOMAL PROTEIN L5, MITOCHONDRIAL	coord: 59..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G006170.1	Lsi10G006170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016020	membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome