Lsi10G006080 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G006080
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Photosystem I subunit IX
Location	chr10: 8640774 .. 8642170 (+)
RNA-Seq Expression	Lsi10G006080
Synteny	Lsi10G006080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCCGTATACTCAAAATCAATAAAAAATTTCATTAAATAAATATGTGTATCTAGGGGTAATTCACTTTGAAGCAATATAACCTCAGCTCTATTTATCGGTCTGAACAAGATACGACTTATTTGATTCAAATTAATTGAATGCACAATTCAAAAAAAGAAACATTTCGGTGGTATTCCATATATTCTATATATTGTAGAGTTCTTTACCTTGTCAATTCAATTTCCAATTCTTGGTCATTGAGATTCATGGGCAATATCAATTAATATTTTAAGGATAGATATTACCTCTCCTTTTCCTCGTTCAACTAAATTGAAATGATTGAAGTTTTTCTATTTGGAATCGTATTGGGTCTAATTCCTATTGCTTTAGCTGGATTATTTGTGACCGCATATTTACAATACAGACGGGGGGATCAGTTGGACCTTTTTTTTTATTGACCTCCTACTTGCTTTATAGGAGGTCAAATTTTGATTTCTGTTAAATTGTTTCAGTATAATTTTCCATCTAACAACAAGAAAAATCGAATCACGCTCTATAGGATTTGAACCTACGACATCGGATTTTGGAGACCCGCGTTCTACCGAACTGAACTAAGAGCGTTTGATTATCAAACTAAATGCAACCCGAATATATCTTCTATACATATATTATCATATAGAATATCATAAAATGAAATAAAAAAAAGATTGATTCGGTATATGTATGTTCAATTTTGATGGATCTCAATTGATTCCTCGTTACTGTTCAGAAGATAAGTAATAGGTAGGGATGACAGGATTGGAACTCGTGACATTTTGTACCCAAAACAAACGCGCTACCAAGCTGCACTACATCCCTTTCAATTGGTCTACAGTGTCATTGTAGAGAATCCCTGTCTTGTTTTCCACATTTTTTATTTATTTCCTCCATTGGTATACACAAATTATCTTGCCATTTCTTCTTTTTTGTCTCATATCATATATAAAATATAATAAAAAGACTTATATACGTAATAAATAATAAATATGAAATCCGCCGTAAAGAAAAATCAATATTTGTTGGGGTGGGGCCAAAAGCGACATATTTTTTTTAATTGGAATATCTACCGAATTGAATTGTTGTACATTTCAATTTGAATTAGGAATTCCGCAGACAATACAAGCGGTTATTAACTATATATACATTTGATGGTATGTAATACCATTATGTATTACAAATTACTCTAAAGTAGGAGGGTTTTAAATGCGAGATCTAAAAACATATCTCTCCGTGGCACCGGTAGTAAGTACTATATGGTTCGGGGCTTTAGCGGGTCTATTAATCGAGATCAATCGTTTATTCCCGGATGCGTTGGTATTCCCATTTTTTGCATCATTCTAGTTATTGACTTGGGAAGGGGTGAAGAAAATTAG

mRNA sequence

ATGGAATCCGAATTCCGCAGACAATACAAGCGGAGGGTTTTAAATGCGAGATCTAAAAACATATCTCTCCGTGGCACCGGTAGTAAGTACTATATGGTTCGGGGCTTTAGCGGGTCTATTAATCGAGATCAATCGTTTATTCCCGGATGCGTTGGTATTCCCATTTTTTGCATCATTCTAGTTATTGACTTGGGAAGGGGTGAAGAAAATTAG

Coding sequence (CDS)

ATGGAATCCGAATTCCGCAGACAATACAAGCGGAGGGTTTTAAATGCGAGATCTAAAAACATATCTCTCCGTGGCACCGGTAGTAAGTACTATATGGTTCGGGGCTTTAGCGGGTCTATTAATCGAGATCAATCGTTTATTCCCGGATGCGTTGGTATTCCCATTTTTTGCATCATTCTAGTTATTGACTTGGGAAGGGGTGAAGAAAATTAG

Protein sequence

MESEFRRQYKRRVLNARSKNISLRGTGSKYYMVRGFSGSINRDQSFIPGCVGIPIFCIILVIDLGRGEEN

Homology

[Close]

BLAST of Lsi10G006080 vs. ExPASy TrEMBL
Match: A0A7J6DR38 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_000243 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.5e-11
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 11  RRVLNARSKNISLRGTGSKYYMVRGFSGSINRDQSFIPGCVGIPIFCIILV 62
           RR+LNARSKNIS RGTGSKYYMV  FS  I+RDQSFI GCV IP+F +I++
Sbjct: 58  RRILNARSKNISFRGTGSKYYMVWVFSRIIDRDQSFISGCVDIPLFLMIVI 108

[Close]

BLAST of Lsi10G006080 vs. ExPASy TrEMBL
Match: A0A7J6HMT8 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_019807 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.8e-11
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 4  EFRRQY-KRRVLNARSKNISLRGTGSKYYMVRGFSGSINRDQSFIPGCVGIPIFCIILV 62
          EF +Q   RR+LNARSKNIS RGTGSKYYMV  FS  I+RDQSFI GCV IP+F +I++
Sbjct: 6  EFSKQKGTRRILNARSKNISFRGTGSKYYMVWVFSRIIDRDQSFISGCVDIPLFLMIVI 64

[Close]

BLAST of Lsi10G006080 vs. ExPASy TrEMBL
Match: A0A7J6I087 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_004369 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 11  RRVLNARSKNISLRGTGSKYYMVRGFSGSINRDQSFIPGCVGIPIFCIILV 62
           RR+LNARSKNISL GTGSKYYMV  FS  I+RDQSFI GCV IP+F +I++
Sbjct: 100 RRILNARSKNISLCGTGSKYYMVWVFSRIIDRDQSFISGCVDIPLFLMIVI 150

[Close]

BLAST of Lsi10G006080 vs. ExPASy TrEMBL
Match: A0A7J6HNG0 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_019795 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.2e-10
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 11 RRVLNARSKNISLRGTGSKYYMVRGFSGSINRDQSFIPGCVGIPIFCIILV 62
          RR+LNARSKNIS RGT SKYYMV  FS  I+RDQSFI GCV IP+F +I++
Sbjct: 34 RRILNARSKNISFRGTSSKYYMVWVFSRIIDRDQSFISGCVDIPLFLMIVI 84

[Close]

BLAST of Lsi10G006080 vs. ExPASy TrEMBL
Match: A0A7J6I153 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_004372 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 4  EFRRQY-KRRVLNARSKNISLRGTGSKYYMVRGFSGSINRDQSFIPGCVGIPIFCIILV 62
          EF +Q   RR+LNARSKNIS RG GSKYYMV  FS  I+RDQSFI GCV IP+F +I++
Sbjct: 6  EFSKQKGTRRILNARSKNISFRGIGSKYYMVWVFSRIIDRDQSFISGCVDIPLFLMIVI 64

[Close]

BLAST of Lsi10G006080 vs. NCBI nr
Match: KAF4348564.1 (hypothetical protein F8388_000243 [Cannabis sativa])

HSP 1 Score: 76.6 bits (187), Expect = 9.2e-11
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 11  RRVLNARSKNISLRGTGSKYYMVRGFSGSINRDQSFIPGCVGIPIFCIILV 62
           RR+LNARSKNIS RGTGSKYYMV  FS  I+RDQSFI GCV IP+F +I++
Sbjct: 58  RRILNARSKNISFRGTGSKYYMVWVFSRIIDRDQSFISGCVDIPLFLMIVI 108

[Close]

BLAST of Lsi10G006080 vs. NCBI nr
Match: KAF4396261.1 (hypothetical protein F8388_019807 [Cannabis sativa])

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 4  EFRRQY-KRRVLNARSKNISLRGTGSKYYMVRGFSGSINRDQSFIPGCVGIPIFCIILV 62
          EF +Q   RR+LNARSKNIS RGTGSKYYMV  FS  I+RDQSFI GCV IP+F +I++
Sbjct: 6  EFSKQKGTRRILNARSKNISFRGTGSKYYMVWVFSRIIDRDQSFISGCVDIPLFLMIVI 64

[Close]

BLAST of Lsi10G006080 vs. NCBI nr
Match: KAF4400826.1 (hypothetical protein G4B88_004369 [Cannabis sativa])

HSP 1 Score: 75.1 bits (183), Expect = 2.7e-10
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 11  RRVLNARSKNISLRGTGSKYYMVRGFSGSINRDQSFIPGCVGIPIFCIILV 62
           RR+LNARSKNISL GTGSKYYMV  FS  I+RDQSFI GCV IP+F +I++
Sbjct: 100 RRILNARSKNISLCGTGSKYYMVWVFSRIIDRDQSFISGCVDIPLFLMIVI 150

[Close]

BLAST of Lsi10G006080 vs. NCBI nr
Match: KAF4396249.1 (hypothetical protein F8388_019795 [Cannabis sativa])

HSP 1 Score: 74.3 bits (181), Expect = 4.6e-10
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 11 RRVLNARSKNISLRGTGSKYYMVRGFSGSINRDQSFIPGCVGIPIFCIILV 62
          RR+LNARSKNIS RGT SKYYMV  FS  I+RDQSFI GCV IP+F +I++
Sbjct: 34 RRILNARSKNISFRGTSSKYYMVWVFSRIIDRDQSFISGCVDIPLFLMIVI 84

[Close]

BLAST of Lsi10G006080 vs. NCBI nr
Match: KAF4400829.1 (hypothetical protein G4B88_004372 [Cannabis sativa])

HSP 1 Score: 73.9 bits (180), Expect = 6.0e-10
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 4  EFRRQY-KRRVLNARSKNISLRGTGSKYYMVRGFSGSINRDQSFIPGCVGIPIFCIILV 62
          EF +Q   RR+LNARSKNIS RG GSKYYMV  FS  I+RDQSFI GCV IP+F +I++
Sbjct: 6  EFSKQKGTRRILNARSKNISFRGIGSKYYMVWVFSRIIDRDQSFISGCVDIPLFLMIVI 64

The following BLAST results are available for this feature:

BLAST of Lsi10G006080 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi10G006080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6DR38	4.5e-11	72.55	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_000243 PE=4 SV=1	[more]
A0A7J6HMT8	5.8e-11	67.80	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_019807 PE=4 SV=1	[more]
A0A7J6I087	1.3e-10	72.55	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_004369 PE=3 SV=1	[more]
A0A7J6HNG0	2.2e-10	70.59	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_019795 PE=4 SV=1	[more]
A0A7J6I153	2.9e-10	66.10	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_004372 PE=3 SV=1	[more]

BLAST of Lsi10G006080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4348564.1	9.2e-11	72.55	hypothetical protein F8388_000243 [Cannabis sativa]	[more]
KAF4396261.1	1.2e-10	67.80	hypothetical protein F8388_019807 [Cannabis sativa]	[more]
KAF4400826.1	2.7e-10	72.55	hypothetical protein G4B88_004369 [Cannabis sativa]	[more]
KAF4396249.1	4.6e-10	70.59	hypothetical protein F8388_019795 [Cannabis sativa]	[more]
KAF4400829.1	6.0e-10	66.10	hypothetical protein G4B88_004372 [Cannabis sativa]	[more]

BLAST of Lsi10G006080 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G006080.1	Lsi10G006080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009512	cytochrome b6f complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I