Lsi10G005910 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G005910
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	B3 domain-containing transcription factor VRN1-like
Location	chr10: 8560812 .. 8562394 (+)
RNA-Seq Expression	Lsi10G005910
Synteny	Lsi10G005910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATCATTGTTAACACATTTTCATGATTTTGTTTATTTTTTTAATTTTTAATTTTGAATCTCATTAATTATGTATTTATAAACCAGTGGCATTATTTAAATTTAATCAAGCTGAAAAAAACTTCAATCTCAGCCCAATGGCTCTATTCAGTTCCCCAAATCCCCATTTCTTCAAGATCATTCTCCACCAAACTCTCATCCAACAAAAGCTTGTAAGTAACAAACAAACCACATTCTCTAATTTCTTCATTTCTTTATTTAATTAATCTTTTTTCTTCGCAGGAGATTCCAAACAAGTTCGTCAAGAACAATGGCGATTCTCTGTTATACAACAAGGTCACTCTCTGCCTTCCCGACGGCGCTAACTGGAAGCTCCAACTCAAGAAATTGGACGACAAAATCTGTTTCCTCAGAGGCTGGCCGGAATTCGTCCAGTTTTACTCTGTCCAACCTGGTTATTTTCTTGTGTTCCAGTTGAAAGCTATTTGCTGCTTCAGTGTCCTCATTTTCGATACCTCTGCTACCGAAATCGATTATCCAACGCGCCGACCGACGGTTCTGATTCCCAAAAGCGAAAATGAGGATGAAGAGGAATCTGTTCAGATACTGAATGAGGCGGTTTTGAAGAAGAGAAGAAGAGACAAAGACGAAGAAACAGCGGCCTATTGTTCGTTCCGAGAGATGAAGAAGATGATGAGGAAGAATGTGAAGATCAAGATCGCGAAGTATCGAGGATTCACTACGCCTCAAGGATTCAGCGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATCTGGAAAGGAATTACTCACGGAGACAGAGTAATTACAGAGGATCAGGTTTCTCTGCCTAATTTCTATAAAATTTAATTTGAATTTCAGTAATCAGTACTTGAATTTGATGAATACTTACCGATTTCAGCGTATAATGAGAGAGATGACGGCCGATCCAGTCCGGAATCGATGAGACCGATGAATCCACGGAAGACGCCGCAGGAATTGACGGAGAATCAATTGGTAGTTCTGAGGAGAGCGAGTTCGTTCAAATGTAGGACGAATAATCCTTCATTCATGGTGACAATGAGGCCTTCCTACATCCAAACAGGGAATTACCTGGTAAGAACAAACTTCTGAAATCAAATGATCTTCAATTGAAAAGAGTGATTTCAGAATTTGATGAATCTGATGCAGAGCATGCCGAGGATCTTTACAGAGAGATACATAAAGGAATCGGTGGATGTGAAGCTGGAGGTGGGCGACGGGAGGAGTTGGAGAGTGTGGTGTGGCGTGCGGTGGGCGTTCACACGGCGGCGAACGGAGTTGAAAGGCGGTTGGAAAAGATTCGCCGTTGATAATGAGTTGGAAGAAGGGGACATTTGTGTGTTCGAATTAATGAACAAAACCCCCAAAGTCCATTTCCACGTCACCATTTTCCGTCTTCCAAGTCCACAGTAAATTCATCGCAATAATGTTTTACGTTATGTGTTATTATGCACTTTAATATTTTTAAAAATGTTAACTCTGAAAAATATTTTATCTTCATTTTGTTAGGATTATATCTTATGAACTCATTTTGGTGC

mRNA sequence

CCATCATTGTTAACACATTTTCATGATTTTGTTTATTTTTTTAATTTTTAATTTTGAATCTCATTAATTATGTATTTATAAACCAGTGGCATTATTTAAATTTAATCAAGCTGAAAAAAACTTCAATCTCAGCCCAATGGCTCTATTCAGTTCCCCAAATCCCCATTTCTTCAAGATCATTCTCCACCAAACTCTCATCCAACAAAAGCTTGAGATTCCAAACAAGTTCGTCAAGAACAATGGCGATTCTCTGTTATACAACAAGGTCACTCTCTGCCTTCCCGACGGCGCTAACTGGAAGCTCCAACTCAAGAAATTGGACGACAAAATCTGTTTCCTCAGAGGCTGGCCGGAATTCGTCCAGTTTTACTCTGTCCAACCTGGTTATTTTCTTGTGTTCCAGTTGAAAGCTATTTGCTGCTTCAGTGTCCTCATTTTCGATACCTCTGCTACCGAAATCGATTATCCAACGCGCCGACCGACGGTTCTGATTCCCAAAAGCGAAAATGAGGATGAAGAGGAATCTGTTCAGATACTGAATGAGGCGGTTTTGAAGAAGAGAAGAAGAGACAAAGACGAAGAAACAGCGGCCTATTGTTCGTTCCGAGAGATGAAGAAGATGATGAGGAAGAATGTGAAGATCAAGATCGCGAAGTATCGAGGATTCACTACGCCTCAAGGATTCAGCGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATCTGGAAAGGAATTACTCACGGAGACAGAGTAATTACAGAGGATCAGCGTATAATGAGAGAGATGACGGCCGATCCAGTCCGGAATCGATGAGACCGATGAATCCACGGAAGACGCCGCAGGAATTGACGGAGAATCAATTGGTAGTTCTGAGGAGAGCGAGTTCGTTCAAATGTAGGACGAATAATCCTTCATTCATGGTGACAATGAGGCCTTCCTACATCCAAACAGGGAATTACCTGAGCATGCCGAGGATCTTTACAGAGAGATACATAAAGGAATCGGTGGATGTGAAGCTGGAGGTGGGCGACGGGAGGAGTTGGAGAGTGTGGTGTGGCGTGCGGTGGGCGTTCACACGGCGGCGAACGGAGTTGAAAGGCGGTTGGAAAAGATTCGCCGTTGATAATGAGTTGGAAGAAGGGGACATTTGTGTGTTCGAATTAATGAACAAAACCCCCAAAGTCCATTTCCACGTCACCATTTTCCGTCTTCCAAGTCCACAGTAAATTCATCGCAATAATGTTTTACGTTATGTGTTATTATGCACTTTAATATTTTTAAAAATGTTAACTCTGAAAAATATTTTATCTTCATTTTGTTAGGATTATATCTTATGAACTCATTTTGGTGC

Coding sequence (CDS)

ATGGCTCTATTCAGTTCCCCAAATCCCCATTTCTTCAAGATCATTCTCCACCAAACTCTCATCCAACAAAAGCTTGAGATTCCAAACAAGTTCGTCAAGAACAATGGCGATTCTCTGTTATACAACAAGGTCACTCTCTGCCTTCCCGACGGCGCTAACTGGAAGCTCCAACTCAAGAAATTGGACGACAAAATCTGTTTCCTCAGAGGCTGGCCGGAATTCGTCCAGTTTTACTCTGTCCAACCTGGTTATTTTCTTGTGTTCCAGTTGAAAGCTATTTGCTGCTTCAGTGTCCTCATTTTCGATACCTCTGCTACCGAAATCGATTATCCAACGCGCCGACCGACGGTTCTGATTCCCAAAAGCGAAAATGAGGATGAAGAGGAATCTGTTCAGATACTGAATGAGGCGGTTTTGAAGAAGAGAAGAAGAGACAAAGACGAAGAAACAGCGGCCTATTGTTCGTTCCGAGAGATGAAGAAGATGATGAGGAAGAATGTGAAGATCAAGATCGCGAAGTATCGAGGATTCACTACGCCTCAAGGATTCAGCGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATCTGGAAAGGAATTACTCACGGAGACAGAGTAATTACAGAGGATCAGCGTATAATGAGAGAGATGACGGCCGATCCAGTCCGGAATCGATGAGACCGATGAATCCACGGAAGACGCCGCAGGAATTGACGGAGAATCAATTGGTAGTTCTGAGGAGAGCGAGTTCGTTCAAATGTAGGACGAATAATCCTTCATTCATGGTGACAATGAGGCCTTCCTACATCCAAACAGGGAATTACCTGAGCATGCCGAGGATCTTTACAGAGAGATACATAAAGGAATCGGTGGATGTGAAGCTGGAGGTGGGCGACGGGAGGAGTTGGAGAGTGTGGTGTGGCGTGCGGTGGGCGTTCACACGGCGGCGAACGGAGTTGAAAGGCGGTTGGAAAAGATTCGCCGTTGATAATGAGTTGGAAGAAGGGGACATTTGTGTGTTCGAATTAATGAACAAAACCCCCAAAGTCCATTTCCACGTCACCATTTTCCGTCTTCCAAGTCCACAGTAA

Protein sequence

MALFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRRDKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDLERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEVGDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPSPQ

Homology

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BLAST of Lsi10G005910 vs. ExPASy Swiss-Prot
Match: Q8L3W1 (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 GN=VRN1 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.5e-27
Identity = 103/358 (28.77%), Postives = 165/358 (46.09%), Query Frame = 0


Query: 7   PNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKIC 66
           P P F K+I   T+ +++L +P+KFV    D L    V L +PDG  W++ L+K D+KI 
Sbjct: 2   PRPFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSV-AVALTVPDGHVWRVGLRKADNKIW 61

Query: 67  FLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDYPTRRPTVLIPKSENED 126
           F  GW EFV  YS++ GY L+F+ +    FSV IF+ S +EI+Y     T L+  + N  
Sbjct: 62  FQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINY---HSTGLMDSAHNH- 121

Query: 127 EEESVQILNEAVLKKRRRDKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDE 186
                     A L +   D+D E     S       + ++       Y        F+  
Sbjct: 122 -------FKRARLFEDLEDEDAEVIFPSSV--YPSPLPESTVPANKGYASSAIQTLFTGP 181

Query: 187 DEDEDEDEDEDLERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELT---ENQ 246
            + E+      + +   R++ N      N        PE+        + ++ T   E +
Sbjct: 182 VKAEEPTPTPKIPKKRGRKKKNADPEEINSSAPRDDDPENRSKFYESASARKRTVTAEER 241

Query: 247 LVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKE-SVDVKLEVGDGR 306
              +  A +F+    NP F V +RPSY+  G  + +P  F E+Y+   S  +K+++ + +
Sbjct: 242 ERAINAAKTFE--PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAE-K 301

Query: 307 SWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRL 361
            W V C     +   R +   GW  F ++N L EGD+CVFEL+ +T      VT FR+
Sbjct: 302 QWPVRC----LYKAGRAKFSQGWYEFTLENNLGEGDVCVFELL-RTRDFVLKVTAFRV 337

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BLAST of Lsi10G005910 vs. ExPASy Swiss-Prot
Match: Q84R27 (B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18960 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.8e-15
Identity = 43/106 (40.57%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 6   SPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKI 65
           SP   FFK++L  T+  + ++IP +FVK  G S L   VTL  P G    ++LK++ ++I
Sbjct: 25  SPVKKFFKLVLPSTMKDKMMKIPPRFVKLQG-SKLSEVVTLETPAGFKRSIKLKRIGEEI 84

Query: 66  CFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDYP 112
            F  GW EF + +S++ G+FL+F+ K    F V+IF+ SA E  YP
Sbjct: 85  WFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYP 129

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BLAST of Lsi10G005910 vs. ExPASy Swiss-Prot
Match: Q9ZSH7 (B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01580 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-14
Identity = 51/140 (36.43%), Postives = 77/140 (55.00%), Query Frame = 0


Query: 6   SPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKI 65
           SP   FFK++L  T+  + + IP +FVK  G S L   VTL  P G    ++LK++ ++I
Sbjct: 25  SPVKKFFKLVLPSTMKDKMMRIPPRFVKLQG-SKLSEVVTLVTPAGYKRSIKLKRIGEEI 84

Query: 66  CFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDYPTRRPTVLIPKSENE 125
            F  GW EF + +S++ G+FL+F+ K    F V+IF+ SA E +YP      +I   ++ 
Sbjct: 85  WFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYPL-DAVHIIDSDDDV 144

Query: 126 DEEESVQILNEAVLKKRRRD 146
            E    +   E   KKR RD
Sbjct: 145 IEITGKEFDTEHKSKKRPRD 162

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BLAST of Lsi10G005910 vs. ExPASy Swiss-Prot
Match: Q9XIB4 (B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana OX=3702 GN=At1g49475 PE=2 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 9.7e-14
Identity = 47/147 (31.97%), Postives = 83/147 (56.46%), Query Frame = 0


Query: 11  FFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRG 70
           F KIIL   +I++ +++P +FV+      L + VTL  P G    +++K++ D++ F +G
Sbjct: 34  FIKIILLSRIIEKMMKVPARFVRFG--PKLTDNVTLQTPVGFKRSIRIKRIGDEVWFEKG 93

Query: 71  WPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDYP-----TRRPTVL------I 130
           W EF + +S+  G+FL F  +   CF V+IFD SA+EI+YP       R  V+       
Sbjct: 94  WSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYPLDDTDDNREEVMDDDEQGF 153

Query: 131 PKSENEDEEESVQILNEAVLKKRRRDK 147
              E+ D++  V  ++E + KK+++ +
Sbjct: 154 TGFESSDDDGEVVDMDELLKKKKKKPR 178

[Close]

BLAST of Lsi10G005910 vs. ExPASy Swiss-Prot
Match: Q2R9D2 (B3 domain-containing protein Os11g0197600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0197600 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.8e-12
Identity = 99/383 (25.85%), Postives = 157/383 (40.99%), Query Frame = 0


Query: 11  FFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNK----VTLCLPDGANWKLQLKKLDDKIC 70
           FF+++L    + ++++IP+ F     +  L N+    V+L    G  W  +L    +   
Sbjct: 32  FFRVLLTLQSL-ERMKIPSSF-----NQCLQNQPTGMVSLVDRSGNKWSAELTSDSEGFF 91

Query: 71  FLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATE-IDYPTRRPTV-LIPKSEN 130
           F+ GW EFV+  S+Q G FLVF       FSV +F+ S  + I   +  P+  +I K+E+
Sbjct: 92  FVHGWKEFVRDNSIQCGQFLVFTYDKRSQFSVTVFEPSGIDKISTFSAHPSKNVIIKTES 151

Query: 131 ED---------EEESVQIL--NEAVLKKRRRD------------KDEETAAYCSFREMKK 190
           ++          E+    L  N  +  KR RD            K    A  C     K+
Sbjct: 152 DEGGMVTAAITTEKMAPALKENNGITGKRTRDVDYLMEDRVVVFKKSSEANVCESSRRKR 211

Query: 191 MMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDED-------LERNYSRRQSNYRGSAY 250
                 K K+      +T       DED    +  +       L    SRR         
Sbjct: 212 AGASAGKSKVTSTSHNSTRGSSCSSDEDNSSSKSPNPPFLMRFLSGEVSRR--------- 271

Query: 251 NERDDGRSSPESMRPMNPRKTPQELTENQL-VVLRRASSFKCRTNNPSFMVTMRPSYIQT 310
                GR   +  R +      + +TE +    L+RA  FK  + NP  +  M  SY+  
Sbjct: 272 -----GRCVSKGQRQLTVISQRRPVTEAEKDHALQRAREFK--SKNPFAVQIMMESYVYV 331

Query: 311 GNYLSMPRIFTERYIKE-SVDVKLEVGDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDN 355
           G ++++P  F    +   +  + L    G++W V     +   R      GGW +FAV N
Sbjct: 332 GFFMNIPCEFVRECLPHTNKRITLWDPQGKAWEV--NYVYYSDRSVGSFSGGWGKFAVGN 390

[Close]

BLAST of Lsi10G005910 vs. ExPASy TrEMBL
Match: A0A1S3C614 (B3 domain-containing transcription factor VRN1-like OS=Cucumis melo OX=3656 GN=LOC103497436 PE=4 SV=1)

HSP 1 Score: 605.1 bits (1559), Expect = 1.9e-169
Identity = 301/366 (82.24%), Postives = 326/366 (89.07%), Query Frame = 0


Query: 1   MALFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKK 60
           M  F SPNPHFFKIILHQ L QQKL++PNKFVKNNGDSLL+N V L LPDGA W  QL K
Sbjct: 1   MGSFISPNPHFFKIILHQNLTQQKLDLPNKFVKNNGDSLLFNHVALSLPDGAKWNFQLMK 60

Query: 61  LDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDYPTRRPTVLIP 120
           LD K CFLRGWPEFV+FYS+QPGYFLVFQLK ICCF+VLIFDTSATEIDYP RRP VLIP
Sbjct: 61  LDGKFCFLRGWPEFVKFYSIQPGYFLVFQLKGICCFNVLIFDTSATEIDYPMRRPPVLIP 120

Query: 121 KSENEDEEESVQILNEAVLKKRRR--DKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFT 180
           KSE+EDEEES+ IL+EA LKKR+R   K++ET+AYCS R+MK    KN++IKI K+R FT
Sbjct: 121 KSESEDEEESIHILHEAALKKRKRMEKKEKETSAYCSLRKMK----KNMEIKIMKHREFT 180

Query: 181 TPQGFSDEDEDEDEDEDEDLERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQE 240
           TPQ FS  DEDEDEDEDEDLE NYS RQ+NYRGSAYNE +DGRSSPESMRPMNPRK PQ 
Sbjct: 181 TPQVFS--DEDEDEDEDEDLETNYSPRQTNYRGSAYNESEDGRSSPESMRPMNPRKAPQV 240

Query: 241 LTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEV 300
           LTENQLVVLRRASSFKCRT NPSFMVTMRPSYIQTGN LS+PRIF+ERYIKES+DVKLEV
Sbjct: 241 LTENQLVVLRRASSFKCRTKNPSFMVTMRPSYIQTGNCLSLPRIFSERYIKESMDVKLEV 300

Query: 301 GDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIF 360
           GDGR W+VWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFEL+NKTPKVHFHVTIF
Sbjct: 301 GDGRIWKVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELINKTPKVHFHVTIF 360

Query: 361 RLPSPQ 365
           RLP+PQ
Sbjct: 361 RLPNPQ 360

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BLAST of Lsi10G005910 vs. ExPASy TrEMBL
Match: A0A0A0LM04 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287160 PE=4 SV=1)

HSP 1 Score: 578.6 bits (1490), Expect = 1.9e-161
Identity = 290/365 (79.45%), Postives = 317/365 (86.85%), Query Frame = 0


Query: 1   MALFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKK 60
           M LF+SPNPHFFKI+LHQ L QQKL++PNKFVKNN  SLL+N  TL LPDG+ W  QL +
Sbjct: 1   MGLFTSPNPHFFKIVLHQNLTQQKLDLPNKFVKNNAHSLLFNNATLSLPDGSKWNFQLTR 60

Query: 61  LDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDYPTRRPTVLIP 120
           LD KICFLRGWPEFV FY+VQPGYFLVFQLK ICCF+VLIFDTSATEIDYP RR  V++P
Sbjct: 61  LDGKICFLRGWPEFVNFYAVQPGYFLVFQLKGICCFNVLIFDTSATEIDYPMRRLPVIVP 120

Query: 121 KSENEDEEESVQILNEAVLKKRRR--DKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFT 180
           KSE++DE ES+QIL+E VLKKRRR   K++ET+AY S REMK    KN+KIKI K R FT
Sbjct: 121 KSESDDEGESIQILHEEVLKKRRRMEKKEKETSAYYSLREMK----KNMKIKIMKRREFT 180

Query: 181 TPQGFSDEDEDEDEDEDEDLERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQE 240
           TPQGFS      D+DEDEDLE +YS RQ+NYR S YNER+DGRSSPESMRPMNPRKT Q 
Sbjct: 181 TPQGFS------DDDEDEDLETDYSPRQTNYRASEYNEREDGRSSPESMRPMNPRKTQQV 240

Query: 241 LTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEV 300
           LTENQLVV+RRASSFKCRT NPSFMVTMRPSYIQTGN LS+PRIF+ERYIKESVDVKLEV
Sbjct: 241 LTENQLVVVRRASSFKCRTKNPSFMVTMRPSYIQTGNCLSLPRIFSERYIKESVDVKLEV 300

Query: 301 GDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIF 360
           GDGR W+VWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHF VTIF
Sbjct: 301 GDGRIWKVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFLVTIF 355

Query: 361 RLPSP 364
           RLPSP
Sbjct: 361 RLPSP 355

[Close]

BLAST of Lsi10G005910 vs. ExPASy TrEMBL
Match: A0A5A7TS22 (B3 domain-containing transcription factor VRN1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002630 PE=4 SV=1)

HSP 1 Score: 559.3 bits (1440), Expect = 1.2e-155
Identity = 286/360 (79.44%), Postives = 305/360 (84.72%), Query Frame = 0


Query: 3   LFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLD 62
           LFSSPNPHFFK+ILHQTL QQKLE+PNKFVKNNG S+L+NKVTL LPDGANWK+QLKK D
Sbjct: 4   LFSSPNPHFFKVILHQTLTQQKLELPNKFVKNNGGSMLFNKVTLFLPDGANWKIQLKKSD 63

Query: 63  DKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDYPTRRPTVLIPKS 122
            KI F RGWPEFVQFYSVQPGYFLVFQLK ICCF+VLIFDTSATEIDYP R    +IPKS
Sbjct: 64  GKIFFRRGWPEFVQFYSVQPGYFLVFQLKGICCFNVLIFDTSATEIDYPIRGLLDIIPKS 123

Query: 123 ENEDEEESVQILNEAVLKKRRRDKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQG 182
            NEDEEES+QILNE VLKKRR +K+EET AY S R +KKMMRKN K+KIAK RG T    
Sbjct: 124 RNEDEEESIQILNEMVLKKRRMEKEEETPAYRSLRGLKKMMRKNAKVKIAKNRGIT---- 183

Query: 183 FSDEDEDEDEDEDEDLERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTEN 242
            SDEDE       EDLE + SRRQSN+RG+AYNE DDGR SPESMRPMNPRKTP  LTEN
Sbjct: 184 -SDEDE-------EDLETDNSRRQSNHRGTAYNEGDDGRVSPESMRPMNPRKTPPALTEN 243

Query: 243 QLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEVGDGR 302
           QL V +RAS FK R NNPSFMVTMRPSYIQTGNYLS+PR F ERYIKESVDVKLEVGDGR
Sbjct: 244 QLAVKKRASRFKSRRNNPSFMVTMRPSYIQTGNYLSLPRRFGERYIKESVDVKLEVGDGR 303

Query: 303 SWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPS 362
           SWRVWCGVRWAFTRRRTELKGGWKRFAVDNEL+EGDICVFELM K   V F V IFRLP+
Sbjct: 304 SWRVWCGVRWAFTRRRTELKGGWKRFAVDNELKEGDICVFELMEKNDAVLFKVAIFRLPN 351

[Close]

BLAST of Lsi10G005910 vs. ExPASy TrEMBL
Match: A0A1S3C6V0 (B3 domain-containing transcription factor VRN1-like OS=Cucumis melo OX=3656 GN=LOC103497522 PE=4 SV=1)

HSP 1 Score: 559.3 bits (1440), Expect = 1.2e-155
Identity = 286/360 (79.44%), Postives = 305/360 (84.72%), Query Frame = 0


Query: 3   LFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLD 62
           LFSSPNPHFFK+ILHQTL QQKLE+PNKFVKNNG S+L+NKVTL LPDGANWK+QLKK D
Sbjct: 43  LFSSPNPHFFKVILHQTLTQQKLELPNKFVKNNGGSMLFNKVTLFLPDGANWKIQLKKSD 102

Query: 63  DKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDYPTRRPTVLIPKS 122
            KI F RGWPEFVQFYSVQPGYFLVFQLK ICCF+VLIFDTSATEIDYP R    +IPKS
Sbjct: 103 GKIFFRRGWPEFVQFYSVQPGYFLVFQLKGICCFNVLIFDTSATEIDYPIRGLLDIIPKS 162

Query: 123 ENEDEEESVQILNEAVLKKRRRDKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQG 182
            NEDEEES+QILNE VLKKRR +K+EET AY S R +KKMMRKN K+KIAK RG T    
Sbjct: 163 RNEDEEESIQILNEMVLKKRRMEKEEETPAYRSLRGLKKMMRKNAKVKIAKNRGIT---- 222

Query: 183 FSDEDEDEDEDEDEDLERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTEN 242
            SDEDE       EDLE + SRRQSN+RG+AYNE DDGR SPESMRPMNPRKTP  LTEN
Sbjct: 223 -SDEDE-------EDLETDNSRRQSNHRGTAYNEGDDGRVSPESMRPMNPRKTPPALTEN 282

Query: 243 QLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEVGDGR 302
           QL V +RAS FK R NNPSFMVTMRPSYIQTGNYLS+PR F ERYIKESVDVKLEVGDGR
Sbjct: 283 QLAVKKRASRFKSRRNNPSFMVTMRPSYIQTGNYLSLPRRFGERYIKESVDVKLEVGDGR 342

Query: 303 SWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPS 362
           SWRVWCGVRWAFTRRRTELKGGWKRFAVDNEL+EGDICVFELM K   V F V IFRLP+
Sbjct: 343 SWRVWCGVRWAFTRRRTELKGGWKRFAVDNELKEGDICVFELMEKNDAVLFKVAIFRLPN 390

[Close]

BLAST of Lsi10G005910 vs. ExPASy TrEMBL
Match: A0A0A0LMR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292230 PE=4 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 2.5e-153
Identity = 284/363 (78.24%), Postives = 303/363 (83.47%), Query Frame = 0


Query: 3   LFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLD 62
           LF SPNPHFFK+ILHQTL QQKL++PNKFVKNNG SLL+NKVTL LPDGANWK+QLKKLD
Sbjct: 4   LFRSPNPHFFKVILHQTLTQQKLDLPNKFVKNNGGSLLFNKVTLFLPDGANWKIQLKKLD 63

Query: 63  DKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDYPTRRPTVLIPKS 122
            KICF RGWPEFVQFYSVQPG+FLVFQLK ICCF+VLIFDTSATEIDYP RR   LIPKS
Sbjct: 64  GKICFRRGWPEFVQFYSVQPGHFLVFQLKGICCFNVLIFDTSATEIDYPIRRLLDLIPKS 123

Query: 123 ENEDEEESVQILNEAVLKKRRRDKDEET-AAYCSFREMKKMMRKNVKIKIAKYRGFTTPQ 182
            NEDEEES+QILNE VLKKRR +K+EET  AY S R +KKMMRKN K+KIAK RG T   
Sbjct: 124 RNEDEEESIQILNEMVLKKRRMEKEEETPPAYRSLRGLKKMMRKNAKVKIAKNRGIT--- 183

Query: 183 GFSDEDEDEDEDEDEDLERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTE 242
             SDEDE        DLE + SRRQSN+RG  YNE DDGR SPESMRPMNPRKTP  LTE
Sbjct: 184 --SDEDEG-------DLEMDNSRRQSNHRGIVYNEGDDGRVSPESMRPMNPRKTPPALTE 243

Query: 243 NQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEVGDG 302
           NQL V +RAS FK R NNPSFMVTMRPSYIQTGNYLS+PR F E+YIKESVDVKLEVGDG
Sbjct: 244 NQLAVKKRASWFKSRRNNPSFMVTMRPSYIQTGNYLSLPRRFGEKYIKESVDVKLEVGDG 303

Query: 303 RSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLP 362
           R WRVWCGVRWAFTRRRTELKGGWKRFAVDNEL+EGDICVFELM K   V F V IFRLP
Sbjct: 304 RCWRVWCGVRWAFTRRRTELKGGWKRFAVDNELKEGDICVFELMKKNGSVLFKVAIFRLP 354

Query: 363 SPQ 365
             +
Sbjct: 364 DAE 354

[Close]

BLAST of Lsi10G005910 vs. NCBI nr
Match: XP_038902137.1 (B3 domain-containing transcription factor VRN1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 629.0 bits (1621), Expect = 2.5e-176
Identity = 311/364 (85.44%), Postives = 333/364 (91.48%), Query Frame = 0


Query: 1   MALFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKK 60
           MALFSSPNPHFFKIILHQ LIQQKL++PNKFVKNNG SLL++K TL LPDGANW +QLK 
Sbjct: 1   MALFSSPNPHFFKIILHQNLIQQKLDLPNKFVKNNGASLLFSKATLSLPDGANWTVQLKN 60

Query: 61  LDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDYPTRRPTVLIP 120
           LD KICFLRGWPEFV+FYS+QPGYFLVFQL+ ICCF+VLIFDTSATEIDYPTR P+VLIP
Sbjct: 61  LDGKICFLRGWPEFVEFYSIQPGYFLVFQLRRICCFNVLIFDTSATEIDYPTRPPSVLIP 120

Query: 121 KSENEDEEESVQILNEAVLKKRRRDKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTP 180
           K+ENED EESV+ LN AVLKKR R+K+E+T AYCSFREMKKMMRKNVKIKI K+RGFTT 
Sbjct: 121 KTENEDGEESVRTLNGAVLKKRSREKEEKTVAYCSFREMKKMMRKNVKIKIEKHRGFTTS 180

Query: 181 QGFSDEDEDEDEDEDEDLERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELT 240
           QGFS     EDEDEDEDLE NYSRRQS YRGSAYNE DDGR SPE+MRPMNPRKTP  LT
Sbjct: 181 QGFS----YEDEDEDEDLETNYSRRQSTYRGSAYNEGDDGRFSPETMRPMNPRKTPPVLT 240

Query: 241 ENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEVGD 300
           ENQLVVLRRA SFKCRTNNPSFMVTMRPSYIQTGNYLS+PRIF ERYIKES+DVKLE+GD
Sbjct: 241 ENQLVVLRRARSFKCRTNNPSFMVTMRPSYIQTGNYLSIPRIFAERYIKESMDVKLEIGD 300

Query: 301 GRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRL 360
           GRSWRV CGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFEL+NKT KVHFHVTIFRL
Sbjct: 301 GRSWRVLCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELINKTTKVHFHVTIFRL 360

Query: 361 PSPQ 365
           PSP+
Sbjct: 361 PSPE 360

[Close]

BLAST of Lsi10G005910 vs. NCBI nr
Match: XP_038902136.1 (B3 domain-containing transcription factor VRN1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 614.0 bits (1582), Expect = 8.4e-172
Identity = 311/392 (79.34%), Postives = 333/392 (84.95%), Query Frame = 0


Query: 1   MALFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKK 60
           MALFSSPNPHFFKIILHQ LIQQKL++PNKFVKNNG SLL++K TL LPDGANW +QLK 
Sbjct: 1   MALFSSPNPHFFKIILHQNLIQQKLDLPNKFVKNNGASLLFSKATLSLPDGANWTVQLKN 60

Query: 61  LDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDYPTRRPTVLIP 120
           LD KICFLRGWPEFV+FYS+QPGYFLVFQL+ ICCF+VLIFDTSATEIDYPTR P+VLIP
Sbjct: 61  LDGKICFLRGWPEFVEFYSIQPGYFLVFQLRRICCFNVLIFDTSATEIDYPTRPPSVLIP 120

Query: 121 KSENEDEEESVQILNEAVLKKRRRDKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTP 180
           K+ENED EESV+ LN AVLKKR R+K+E+T AYCSFREMKKMMRKNVKIKI K+RGFTT 
Sbjct: 121 KTENEDGEESVRTLNGAVLKKRSREKEEKTVAYCSFREMKKMMRKNVKIKIEKHRGFTTS 180

Query: 181 QGFSDEDEDEDEDEDEDLERNYSRRQSNYRG----------------------------S 240
           QGFS     EDEDEDEDLE NYSRRQS YRG                            S
Sbjct: 181 QGFS----YEDEDEDEDLETNYSRRQSTYRGSGLFRLISLKFNLNFTYQYLKLDEYLPIS 240

Query: 241 AYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQ 300
           AYNE DDGR SPE+MRPMNPRKTP  LTENQLVVLRRA SFKCRTNNPSFMVTMRPSYIQ
Sbjct: 241 AYNEGDDGRFSPETMRPMNPRKTPPVLTENQLVVLRRARSFKCRTNNPSFMVTMRPSYIQ 300

Query: 301 TGNYLSMPRIFTERYIKESVDVKLEVGDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDN 360
           TGNYLS+PRIF ERYIKES+DVKLE+GDGRSWRV CGVRWAFTRRRTELKGGWKRFAVDN
Sbjct: 301 TGNYLSIPRIFAERYIKESMDVKLEIGDGRSWRVLCGVRWAFTRRRTELKGGWKRFAVDN 360

Query: 361 ELEEGDICVFELMNKTPKVHFHVTIFRLPSPQ 365
           ELEEGDICVFEL+NKT KVHFHVTIFRLPSP+
Sbjct: 361 ELEEGDICVFELINKTTKVHFHVTIFRLPSPE 388

[Close]

BLAST of Lsi10G005910 vs. NCBI nr
Match: XP_008457851.1 (PREDICTED: B3 domain-containing transcription factor VRN1-like [Cucumis melo])

HSP 1 Score: 605.1 bits (1559), Expect = 3.9e-169
Identity = 301/366 (82.24%), Postives = 326/366 (89.07%), Query Frame = 0


Query: 1   MALFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKK 60
           M  F SPNPHFFKIILHQ L QQKL++PNKFVKNNGDSLL+N V L LPDGA W  QL K
Sbjct: 1   MGSFISPNPHFFKIILHQNLTQQKLDLPNKFVKNNGDSLLFNHVALSLPDGAKWNFQLMK 60

Query: 61  LDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDYPTRRPTVLIP 120
           LD K CFLRGWPEFV+FYS+QPGYFLVFQLK ICCF+VLIFDTSATEIDYP RRP VLIP
Sbjct: 61  LDGKFCFLRGWPEFVKFYSIQPGYFLVFQLKGICCFNVLIFDTSATEIDYPMRRPPVLIP 120

Query: 121 KSENEDEEESVQILNEAVLKKRRR--DKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFT 180
           KSE+EDEEES+ IL+EA LKKR+R   K++ET+AYCS R+MK    KN++IKI K+R FT
Sbjct: 121 KSESEDEEESIHILHEAALKKRKRMEKKEKETSAYCSLRKMK----KNMEIKIMKHREFT 180

Query: 181 TPQGFSDEDEDEDEDEDEDLERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQE 240
           TPQ FS  DEDEDEDEDEDLE NYS RQ+NYRGSAYNE +DGRSSPESMRPMNPRK PQ 
Sbjct: 181 TPQVFS--DEDEDEDEDEDLETNYSPRQTNYRGSAYNESEDGRSSPESMRPMNPRKAPQV 240

Query: 241 LTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEV 300
           LTENQLVVLRRASSFKCRT NPSFMVTMRPSYIQTGN LS+PRIF+ERYIKES+DVKLEV
Sbjct: 241 LTENQLVVLRRASSFKCRTKNPSFMVTMRPSYIQTGNCLSLPRIFSERYIKESMDVKLEV 300

Query: 301 GDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIF 360
           GDGR W+VWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFEL+NKTPKVHFHVTIF
Sbjct: 301 GDGRIWKVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELINKTPKVHFHVTIF 360

Query: 361 RLPSPQ 365
           RLP+PQ
Sbjct: 361 RLPNPQ 360

[Close]

BLAST of Lsi10G005910 vs. NCBI nr
Match: XP_004148065.1 (B3 domain-containing transcription factor VRN1 isoform X2 [Cucumis sativus] >KGN62034.1 hypothetical protein Csa_006117 [Cucumis sativus])

HSP 1 Score: 578.6 bits (1490), Expect = 3.9e-161
Identity = 290/365 (79.45%), Postives = 317/365 (86.85%), Query Frame = 0


Query: 1   MALFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKK 60
           M LF+SPNPHFFKI+LHQ L QQKL++PNKFVKNN  SLL+N  TL LPDG+ W  QL +
Sbjct: 1   MGLFTSPNPHFFKIVLHQNLTQQKLDLPNKFVKNNAHSLLFNNATLSLPDGSKWNFQLTR 60

Query: 61  LDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDYPTRRPTVLIP 120
           LD KICFLRGWPEFV FY+VQPGYFLVFQLK ICCF+VLIFDTSATEIDYP RR  V++P
Sbjct: 61  LDGKICFLRGWPEFVNFYAVQPGYFLVFQLKGICCFNVLIFDTSATEIDYPMRRLPVIVP 120

Query: 121 KSENEDEEESVQILNEAVLKKRRR--DKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFT 180
           KSE++DE ES+QIL+E VLKKRRR   K++ET+AY S REMK    KN+KIKI K R FT
Sbjct: 121 KSESDDEGESIQILHEEVLKKRRRMEKKEKETSAYYSLREMK----KNMKIKIMKRREFT 180

Query: 181 TPQGFSDEDEDEDEDEDEDLERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQE 240
           TPQGFS      D+DEDEDLE +YS RQ+NYR S YNER+DGRSSPESMRPMNPRKT Q 
Sbjct: 181 TPQGFS------DDDEDEDLETDYSPRQTNYRASEYNEREDGRSSPESMRPMNPRKTQQV 240

Query: 241 LTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEV 300
           LTENQLVV+RRASSFKCRT NPSFMVTMRPSYIQTGN LS+PRIF+ERYIKESVDVKLEV
Sbjct: 241 LTENQLVVVRRASSFKCRTKNPSFMVTMRPSYIQTGNCLSLPRIFSERYIKESVDVKLEV 300

Query: 301 GDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIF 360
           GDGR W+VWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHF VTIF
Sbjct: 301 GDGRIWKVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFLVTIF 355

Query: 361 RLPSP 364
           RLPSP
Sbjct: 361 RLPSP 355

[Close]

BLAST of Lsi10G005910 vs. NCBI nr
Match: XP_011649360.1 (B3 domain-containing transcription factor VRN1 isoform X1 [Cucumis sativus])

HSP 1 Score: 564.3 bits (1453), Expect = 7.6e-157
Identity = 290/391 (74.17%), Postives = 317/391 (81.07%), Query Frame = 0


Query: 1   MALFSSPNPHFFKIILHQTLIQQKL--------------------------EIPNKFVKN 60
           M LF+SPNPHFFKI+LHQ L QQKL                          ++PNKFVKN
Sbjct: 1   MGLFTSPNPHFFKIVLHQNLTQQKLVSTNQTNKFFKSHSLITLFFFLLLQQDLPNKFVKN 60

Query: 61  NGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAIC 120
           N  SLL+N  TL LPDG+ W  QL +LD KICFLRGWPEFV FY+VQPGYFLVFQLK IC
Sbjct: 61  NAHSLLFNNATLSLPDGSKWNFQLTRLDGKICFLRGWPEFVNFYAVQPGYFLVFQLKGIC 120

Query: 121 CFSVLIFDTSATEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRR--DKDEETAA 180
           CF+VLIFDTSATEIDYP RR  V++PKSE++DE ES+QIL+E VLKKRRR   K++ET+A
Sbjct: 121 CFNVLIFDTSATEIDYPMRRLPVIVPKSESDDEGESIQILHEEVLKKRRRMEKKEKETSA 180

Query: 181 YCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDLERNYSRRQSNYRGS 240
           Y S REMK    KN+KIKI K R FTTPQGFS      D+DEDEDLE +YS RQ+NYR S
Sbjct: 181 YYSLREMK----KNMKIKIMKRREFTTPQGFS------DDDEDEDLETDYSPRQTNYRAS 240

Query: 241 AYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQ 300
            YNER+DGRSSPESMRPMNPRKT Q LTENQLVV+RRASSFKCRT NPSFMVTMRPSYIQ
Sbjct: 241 EYNEREDGRSSPESMRPMNPRKTQQVLTENQLVVVRRASSFKCRTKNPSFMVTMRPSYIQ 300

Query: 301 TGNYLSMPRIFTERYIKESVDVKLEVGDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDN 360
           TGN LS+PRIF+ERYIKESVDVKLEVGDGR W+VWCGVRWAFTRRRTELKGGWKRFAVDN
Sbjct: 301 TGNCLSLPRIFSERYIKESVDVKLEVGDGRIWKVWCGVRWAFTRRRTELKGGWKRFAVDN 360

Query: 361 ELEEGDICVFELMNKTPKVHFHVTIFRLPSP 364
           ELEEGDICVFELMNKTPKVHF VTIFRLPSP
Sbjct: 361 ELEEGDICVFELMNKTPKVHFLVTIFRLPSP 381

[Close]

BLAST of Lsi10G005910 vs. TAIR 10
Match: AT3G18990.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 123.6 bits (309), Expect = 3.2e-28
Identity = 103/358 (28.77%), Postives = 165/358 (46.09%), Query Frame = 0


Query: 7   PNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKIC 66
           P P F K+I   T+ +++L +P+KFV    D L    V L +PDG  W++ L+K D+KI 
Sbjct: 2   PRPFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSV-AVALTVPDGHVWRVGLRKADNKIW 61

Query: 67  FLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDYPTRRPTVLIPKSENED 126
           F  GW EFV  YS++ GY L+F+ +    FSV IF+ S +EI+Y     T L+  + N  
Sbjct: 62  FQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINY---HSTGLMDSAHNH- 121

Query: 127 EEESVQILNEAVLKKRRRDKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDE 186
                     A L +   D+D E     S       + ++       Y        F+  
Sbjct: 122 -------FKRARLFEDLEDEDAEVIFPSSV--YPSPLPESTVPANKGYASSAIQTLFTGP 181

Query: 187 DEDEDEDEDEDLERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELT---ENQ 246
            + E+      + +   R++ N      N        PE+        + ++ T   E +
Sbjct: 182 VKAEEPTPTPKIPKKRGRKKKNADPEEINSSAPRDDDPENRSKFYESASARKRTVTAEER 241

Query: 247 LVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKE-SVDVKLEVGDGR 306
              +  A +F+    NP F V +RPSY+  G  + +P  F E+Y+   S  +K+++ + +
Sbjct: 242 ERAINAAKTFE--PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAE-K 301

Query: 307 SWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRL 361
            W V C     +   R +   GW  F ++N L EGD+CVFEL+ +T      VT FR+
Sbjct: 302 QWPVRC----LYKAGRAKFSQGWYEFTLENNLGEGDVCVFELL-RTRDFVLKVTAFRV 337

[Close]

BLAST of Lsi10G005910 vs. TAIR 10
Match: AT3G18960.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 82.8 bits (203), Expect = 6.2e-16
Identity = 43/106 (40.57%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 6   SPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKI 65
           SP   FFK++L  T+  + ++IP +FVK  G S L   VTL  P G    ++LK++ ++I
Sbjct: 25  SPVKKFFKLVLPSTMKDKMMKIPPRFVKLQG-SKLSEVVTLETPAGFKRSIKLKRIGEEI 84

Query: 66  CFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDYP 112
            F  GW EF + +S++ G+FL+F+ K    F V+IF+ SA E  YP
Sbjct: 85  WFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYP 129

[Close]

BLAST of Lsi10G005910 vs. TAIR 10
Match: AT4G01580.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 82.4 bits (202), Expect = 8.2e-16
Identity = 51/140 (36.43%), Postives = 77/140 (55.00%), Query Frame = 0


Query: 6   SPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKI 65
           SP   FFK++L  T+  + + IP +FVK  G S L   VTL  P G    ++LK++ ++I
Sbjct: 25  SPVKKFFKLVLPSTMKDKMMRIPPRFVKLQG-SKLSEVVTLVTPAGYKRSIKLKRIGEEI 84

Query: 66  CFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDYPTRRPTVLIPKSENE 125
            F  GW EF + +S++ G+FL+F+ K    F V+IF+ SA E +YP      +I   ++ 
Sbjct: 85  WFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYPL-DAVHIIDSDDDV 144

Query: 126 DEEESVQILNEAVLKKRRRD 146
            E    +   E   KKR RD
Sbjct: 145 IEITGKEFDTEHKSKKRPRD 162

[Close]

BLAST of Lsi10G005910 vs. TAIR 10
Match: AT1G49475.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 79.3 bits (194), Expect = 6.9e-15
Identity = 47/147 (31.97%), Postives = 83/147 (56.46%), Query Frame = 0


Query: 11  FFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRG 70
           F KIIL   +I++ +++P +FV+      L + VTL  P G    +++K++ D++ F +G
Sbjct: 34  FIKIILLSRIIEKMMKVPARFVRFG--PKLTDNVTLQTPVGFKRSIRIKRIGDEVWFEKG 93

Query: 71  WPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDYP-----TRRPTVL------I 130
           W EF + +S+  G+FL F  +   CF V+IFD SA+EI+YP       R  V+       
Sbjct: 94  WSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYPLDDTDDNREEVMDDDEQGF 153

Query: 131 PKSENEDEEESVQILNEAVLKKRRRDK 147
              E+ D++  V  ++E + KK+++ +
Sbjct: 154 TGFESSDDDGEVVDMDELLKKKKKKPR 178

[Close]

BLAST of Lsi10G005910 vs. TAIR 10
Match: AT1G49480.1 (related to vernalization1 1 )

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-10
Identity = 57/192 (29.69%), Postives = 88/192 (45.83%), Query Frame = 0


Query: 174 YRGFTTPQGFSDEDEDEDEDEDEDLERNYSRRQSNYRGSAYNER----DDGRSSPESMRP 233
           Y G T  Q F  E + E   E   + +   R++ N      N      DD  +  +    
Sbjct: 43  YGGSTAIQSFFKESKAE---ETPKVLKKRGRKKKNPNPEEVNSSTPGGDDSENRSKFYES 102

Query: 234 MNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIK 293
            + RK      E +  V   A +F+    NP F V +RPSY+  G  + +P  F E+Y+ 
Sbjct: 103 ASARKRTVTAEERERAV-NAAKTFE--PTNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLS 162

Query: 294 E-SVDVKLEVGDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKT 353
             S  +KL++G+ + W V C     +   R +   GW  F ++N + EGD+CVFEL+ +T
Sbjct: 163 GISGFIKLQLGE-KQWPVRC----LYKAGRAKFSQGWYEFTLENNIGEGDVCVFELL-RT 222

Query: 354 PKVHFHVTIFRL 361
                 VT FR+
Sbjct: 223 RDFVLEVTAFRV 222

The following BLAST results are available for this feature:

BLAST of Lsi10G005910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L3W1	4.5e-27	28.77	B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q84R27	8.8e-15	40.57	B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18...	[more]
Q9ZSH7	1.1e-14	36.43	B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01...	[more]
Q9XIB4	9.7e-14	31.97	B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana OX=3702 GN=At1g49...	[more]
Q2R9D2	1.8e-12	25.85	B3 domain-containing protein Os11g0197600 OS=Oryza sativa subsp. japonica OX=399...	[more]

BLAST of Lsi10G005910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C614	1.9e-169	82.24	B3 domain-containing transcription factor VRN1-like OS=Cucumis melo OX=3656 GN=L...	[more]
A0A0A0LM04	1.9e-161	79.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287160 PE=4 SV=1	[more]
A0A5A7TS22	1.2e-155	79.44	B3 domain-containing transcription factor VRN1-like OS=Cucumis melo var. makuwa ...	[more]
A0A1S3C6V0	1.2e-155	79.44	B3 domain-containing transcription factor VRN1-like OS=Cucumis melo OX=3656 GN=L...	[more]
A0A0A0LMR6	2.5e-153	78.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292230 PE=4 SV=1	[more]

BLAST of Lsi10G005910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902137.1	2.5e-176	85.44	B3 domain-containing transcription factor VRN1-like isoform X2 [Benincasa hispid...	[more]
XP_038902136.1	8.4e-172	79.34	B3 domain-containing transcription factor VRN1-like isoform X1 [Benincasa hispid...	[more]
XP_008457851.1	3.9e-169	82.24	PREDICTED: B3 domain-containing transcription factor VRN1-like [Cucumis melo]	[more]
XP_004148065.1	3.9e-161	79.45	B3 domain-containing transcription factor VRN1 isoform X2 [Cucumis sativus] >KGN...	[more]
XP_011649360.1	7.6e-157	74.17	B3 domain-containing transcription factor VRN1 isoform X1 [Cucumis sativus]	[more]

BLAST of Lsi10G005910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18990.1	3.2e-28	28.77	AP2/B3-like transcriptional factor family protein	[more]
AT3G18960.1	6.2e-16	40.57	AP2/B3-like transcriptional factor family protein	[more]
AT4G01580.1	8.2e-16	36.43	AP2/B3-like transcriptional factor family protein	[more]
AT1G49475.1	6.9e-15	31.97	AP2/B3-like transcriptional factor family protein	[more]
AT1G49480.1	1.0e-10	29.69	related to vernalization1 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003340	B3 DNA binding domain	SMART	SM01019	B3_2	coord: 11..104 e-value: 1.7E-12 score: 57.5 coord: 262..361 e-value: 5.0E-12 score: 56.0
IPR003340	B3 DNA binding domain	PFAM	PF02362	B3	coord: 262..359 e-value: 2.4E-18 score: 65.9 coord: 11..102 e-value: 5.4E-10 score: 39.0
IPR003340	B3 DNA binding domain	PROSITE	PS50863	B3	coord: 262..361 score: 13.690386
IPR003340	B3 DNA binding domain	PROSITE	PS50863	B3	coord: 10..104 score: 10.997
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 260..359 e-value: 3.56877E-23 score: 90.4648
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 9..102 e-value: 1.55062E-16 score: 72.3605
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 3..105 e-value: 4.0E-22 score: 80.0
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 240..360 e-value: 6.2E-30 score: 105.4
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 257..361
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 4..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..197
None	No IPR available	PANTHER	PTHR31920	B3 DOMAIN-CONTAINING	coord: 4..359
None	No IPR available	PANTHER	PTHR31920:SF26	TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED	coord: 4..359

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G005910.1	Lsi10G005910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding