Lsi10G005160 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi10G005160
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionVQ domain-containing protein
Locationchr10: 7375139 .. 7375450 (+)
RNA-Seq ExpressionLsi10G005160
SyntenyLsi10G005160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCTCACTCTTTTTCTTTTCACTACTCCGAGCCGGAGCAAGCTCACAAGCCGCCCAAGAAGGCGGTGGCTCCTCCGCGGCCGACGCCACCCCAGGTTTACAAGGTCGACCCAATCAACTTCCGGGATGTTGTTCAGAAGCTAACTGCAGCTCCTGAGTTTCAGGATCGCCGCCTTCAAGCTATGCCGCCTCCACGCCCCAATCTCTCCGATCTGCCGCCGCCTTCTGTTGACCGCCGGGATTTCTCTGGCCAGGGCTTTGCTTCTTACAATGGTTTCTTGGGACAGTACTCCTCTGAGAGATATTAG

mRNA sequence

ATGGAATCTCACTCTTTTTCTTTTCACTACTCCGAGCCGGAGCAAGCTCACAAGCCGCCCAAGAAGGCGGTGGCTCCTCCGCGGCCGACGCCACCCCAGGTTTACAAGGTCGACCCAATCAACTTCCGGGATGTTGTTCAGAAGCTAACTGCAGCTCCTGAGTTTCAGGATCGCCGCCTTCAAGCTATGCCGCCTCCACGCCCCAATCTCTCCGATCTGCCGCCGCCTTCTGTTGACCGCCGGGATTTCTCTGGCCAGGGCTTTGCTTCTTACAATGGTTTCTTGGGACAGTACTCCTCTGAGAGATATTAG

Coding sequence (CDS)

ATGGAATCTCACTCTTTTTCTTTTCACTACTCCGAGCCGGAGCAAGCTCACAAGCCGCCCAAGAAGGCGGTGGCTCCTCCGCGGCCGACGCCACCCCAGGTTTACAAGGTCGACCCAATCAACTTCCGGGATGTTGTTCAGAAGCTAACTGCAGCTCCTGAGTTTCAGGATCGCCGCCTTCAAGCTATGCCGCCTCCACGCCCCAATCTCTCCGATCTGCCGCCGCCTTCTGTTGACCGCCGGGATTTCTCTGGCCAGGGCTTTGCTTCTTACAATGGTTTCTTGGGACAGTACTCCTCTGAGAGATATTAG

Protein sequence

MESHSFSFHYSEPEQAHKPPKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPPPRPNLSDLPPPSVDRRDFSGQGFASYNGFLGQYSSERY
Homology
BLAST of Lsi10G005160 vs. ExPASy TrEMBL
Match: A0A5A7TW54 (VQ motif-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00880 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.6e-27
Identity = 74/107 (69.16%), Postives = 81/107 (75.70%), Query Frame = 0

Query: 1   MESHSFSFHYSEP-EQAHKPPKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRR 60
           ME HSFSF+Y++      K  KKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRR
Sbjct: 1   MEPHSFSFYYTDQGASVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRR 60

Query: 61  LQAMPPPRPNLSDLPPPSVDRRDFSGQ---GFASYNGFLGQYSSERY 104
           LQAMPPPRPN++D    S   RD SG+   G  SY+GF    SSERY
Sbjct: 61  LQAMPPPRPNVAD---QSRRPRDSSGEGEGGVVSYHGFFLGQSSERY 104

BLAST of Lsi10G005160 vs. ExPASy TrEMBL
Match: A0A0A0LPS3 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G271490 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.4e-21
Identity = 62/86 (72.09%), Postives = 68/86 (79.07%), Query Frame = 0

Query: 18  KPPKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPPPRPNLSDLPPPS 77
           K  KK VAPPRP+PPQVYKVDPINFRDVVQKLTAAP+FQDRRLQAMPPPRP+L+D    S
Sbjct: 9   KTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRRLQAMPPPRPDLAD---QS 68

Query: 78  VDRRDFSGQGFASYNGFLGQYSSERY 104
              RD SG+G   +  FLGQ SS RY
Sbjct: 69  SRPRDLSGEGEGGF--FLGQ-SSHRY 88

BLAST of Lsi10G005160 vs. ExPASy TrEMBL
Match: A0A6J1D7B4 (VQ motif-containing protein 29 OS=Momordica charantia OX=3673 GN=LOC111017949 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-19
Identity = 59/95 (62.11%), Postives = 67/95 (70.53%), Query Frame = 0

Query: 9   HYSEPEQAHKPPKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPPPRP 68
           H S    A KP  +AVAP  PTPPQ+YKV+P++FRDVVQKLTAAPEFQDRRLQAMP PRP
Sbjct: 4   HSSSSSPAVKPWNRAVAPLPPTPPQIYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRP 63

Query: 69  NLSDLPPPSVDRRDFSGQGFASYNGFLGQYSSERY 104
           +    PP S    DFSG+G   Y G+ G   SERY
Sbjct: 64  S---PPPGSAACTDFSGEGAVIYYGYPGVGFSERY 95

BLAST of Lsi10G005160 vs. ExPASy TrEMBL
Match: A0A2N9FPV7 (VQ domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20638 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 0

Query: 18  KPPKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPPPRPNLSDLPPPS 77
           KP KK VAP  PTPP++YKVDPINFRD+VQKLT A EFQ +RLQ++ PP  N+S+  P  
Sbjct: 46  KPWKKPVAPLPPTPPRIYKVDPINFRDLVQKLTGANEFQSQRLQSVAPPPLNVSNTQPLM 105

Query: 78  VDR 81
            +R
Sbjct: 106 FNR 108

BLAST of Lsi10G005160 vs. ExPASy TrEMBL
Match: A0A5J4ZYQ3 (VQ domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_013057 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 0

Query: 7   SFHYSEPEQAHKPPKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPPP 66
           S H        KP KK +AP  PTPP++YKVD +NFR+VVQKLTAAPEFQ RRLQ++ PP
Sbjct: 38  SLHSVRKLPGAKPWKKPIAPLPPTPPRIYKVDSVNFREVVQKLTAAPEFQSRRLQSVAPP 97

Query: 67  RPNLS 72
             NLS
Sbjct: 98  PLNLS 102

BLAST of Lsi10G005160 vs. NCBI nr
Match: KAA0045761.1 (VQ motif-containing protein 29 [Cucumis melo var. makuwa] >TYJ99521.1 VQ motif-containing protein 29 [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 74/107 (69.16%), Postives = 81/107 (75.70%), Query Frame = 0

Query: 1   MESHSFSFHYSEP-EQAHKPPKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRR 60
           ME HSFSF+Y++      K  KKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRR
Sbjct: 1   MEPHSFSFYYTDQGASVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRR 60

Query: 61  LQAMPPPRPNLSDLPPPSVDRRDFSGQ---GFASYNGFLGQYSSERY 104
           LQAMPPPRPN++D    S   RD SG+   G  SY+GF    SSERY
Sbjct: 61  LQAMPPPRPNVAD---QSRRPRDSSGEGEGGVVSYHGFFLGQSSERY 104

BLAST of Lsi10G005160 vs. NCBI nr
Match: KAE8651906.1 (hypothetical protein Csa_006780 [Cucumis sativus])

HSP 1 Score: 120.6 bits (301), Expect = 8.2e-24
Identity = 70/104 (67.31%), Postives = 78/104 (75.00%), Query Frame = 0

Query: 1   MESHSFSFHY-SEPEQAHKPPKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRR 60
           ME HSFSF+Y  +     K  KK VAPPRP+PPQVYKVDPINFRDVVQKLTAAP+FQDRR
Sbjct: 1   MEPHSFSFYYMDQGAPVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRR 60

Query: 61  LQAMPPPRPNLSDLPPPSVDRRDFSGQGFASYNGFLGQYSSERY 104
           LQAMPPPRP+L+D    S   RD SG+G   +  FLGQ SS RY
Sbjct: 61  LQAMPPPRPDLAD---QSSRPRDLSGEGEGGF--FLGQ-SSHRY 98

BLAST of Lsi10G005160 vs. NCBI nr
Match: XP_022149539.1 (VQ motif-containing protein 29 [Momordica charantia])

HSP 1 Score: 105.1 bits (261), Expect = 3.6e-19
Identity = 59/95 (62.11%), Postives = 67/95 (70.53%), Query Frame = 0

Query: 9   HYSEPEQAHKPPKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPPPRP 68
           H S    A KP  +AVAP  PTPPQ+YKV+P++FRDVVQKLTAAPEFQDRRLQAMP PRP
Sbjct: 4   HSSSSSPAVKPWNRAVAPLPPTPPQIYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRP 63

Query: 69  NLSDLPPPSVDRRDFSGQGFASYNGFLGQYSSERY 104
           +    PP S    DFSG+G   Y G+ G   SERY
Sbjct: 64  S---PPPGSAACTDFSGEGAVIYYGYPGVGFSERY 95

BLAST of Lsi10G005160 vs. NCBI nr
Match: KAG6605217.1 (hypothetical protein SDJN03_02534, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.4 bits (254), Expect = 2.3e-18
Identity = 55/83 (66.27%), Postives = 64/83 (77.11%), Query Frame = 0

Query: 3  SHSFSFHYSEPEQAHK----PPKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDR 62
          S SFSF+YS+P+  HK     PKKAVAPP P PP+VYKV+PI FRDVVQKLT+ PE+ D 
Sbjct: 10 SSSFSFYYSDPDGVHKASSRSPKKAVAPPPPMPPRVYKVEPIEFRDVVQKLTSPPEYLDP 69

Query: 63 RLQAMPPPRPNLSDLPPPSVDRR 82
          RL+AMP PRPNLS+ PPP   RR
Sbjct: 70 RLKAMPAPRPNLSN-PPPCSSRR 91

BLAST of Lsi10G005160 vs. NCBI nr
Match: KAA8522582.1 (hypothetical protein F0562_013057 [Nyssa sinensis])

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-10
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 0

Query: 7   SFHYSEPEQAHKPPKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPPP 66
           S H        KP KK +AP  PTPP++YKVD +NFR+VVQKLTAAPEFQ RRLQ++ PP
Sbjct: 38  SLHSVRKLPGAKPWKKPIAPLPPTPPRIYKVDSVNFREVVQKLTAAPEFQSRRLQSVAPP 97

Query: 67  RPNLS 72
             NLS
Sbjct: 98  PLNLS 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TW546.6e-2769.16VQ motif-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A0A0LPS35.4e-2172.09VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G271490 PE=4 SV=... [more]
A0A6J1D7B41.7e-1962.11VQ motif-containing protein 29 OS=Momordica charantia OX=3673 GN=LOC111017949 PE... [more]
A0A2N9FPV71.1e-1061.90VQ domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20638 PE=4 ... [more]
A0A5J4ZYQ31.1e-1061.54VQ domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_013057 PE=4 SV... [more]
Match NameE-valueIdentityDescription
KAA0045761.11.4e-2669.16VQ motif-containing protein 29 [Cucumis melo var. makuwa] >TYJ99521.1 VQ motif-c... [more]
KAE8651906.18.2e-2467.31hypothetical protein Csa_006780 [Cucumis sativus][more]
XP_022149539.13.6e-1962.11VQ motif-containing protein 29 [Momordica charantia][more]
KAG6605217.12.3e-1866.27hypothetical protein SDJN03_02534, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA8522582.12.3e-1061.54hypothetical protein F0562_013057 [Nyssa sinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 30..50
e-value: 8.9E-9
score: 34.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..103
NoneNo IPR availablePANTHERPTHR34794:SF1EXPRESSED PROTEINcoord: 16..81
IPR039610VQ motif-containing protein 29PANTHERPTHR34794EXPRESSED PROTEINcoord: 16..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G005160.1Lsi10G005160.1mRNA