Lsi10G005160 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAATCTCACTCTTTTTCTTTTCACTACTCCGAGCCGGAGCAAGCTCACAAGCCGCCCAAGAAGGCGGTGGCTCCTCCGCGGCCGACGCCACCCCAGGTTTACAAGGTCGACCCAATCAACTTCCGGGATGTTGTTCAGAAGCTAACTGCAGCTCCTGAGTTTCAGGATCGCCGCCTTCAAGCTATGCCGCCTCCACGCCCCAATCTCTCCGATCTGCCGCCGCCTTCTGTTGACCGCCGGGATTTCTCTGGCCAGGGCTTTGCTTCTTACAATGGTTTCTTGGGACAGTACTCCTCTGAGAGATATTAG ATGGAATCTCACTCTTTTTCTTTTCACTACTCCGAGCCGGAGCAAGCTCACAAGCCGCCCAAGAAGGCGGTGGCTCCTCCGCGGCCGACGCCACCCCAGGTTTACAAGGTCGACCCAATCAACTTCCGGGATGTTGTTCAGAAGCTAACTGCAGCTCCTGAGTTTCAGGATCGCCGCCTTCAAGCTATGCCGCCTCCACGCCCCAATCTCTCCGATCTGCCGCCGCCTTCTGTTGACCGCCGGGATTTCTCTGGCCAGGGCTTTGCTTCTTACAATGGTTTCTTGGGACAGTACTCCTCTGAGAGATATTAG ATGGAATCTCACTCTTTTTCTTTTCACTACTCCGAGCCGGAGCAAGCTCACAAGCCGCCCAAGAAGGCGGTGGCTCCTCCGCGGCCGACGCCACCCCAGGTTTACAAGGTCGACCCAATCAACTTCCGGGATGTTGTTCAGAAGCTAACTGCAGCTCCTGAGTTTCAGGATCGCCGCCTTCAAGCTATGCCGCCTCCACGCCCCAATCTCTCCGATCTGCCGCCGCCTTCTGTTGACCGCCGGGATTTCTCTGGCCAGGGCTTTGCTTCTTACAATGGTTTCTTGGGACAGTACTCCTCTGAGAGATATTAG MESHSFSFHYSEPEQAHKPPKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPPPRPNLSDLPPPSVDRRDFSGQGFASYNGFLGQYSSERY Homology
BLAST of Lsi10G005160 vs. ExPASy TrEMBL
Match: A0A5A7TW54 (VQ motif-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00880 PE=4 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 6.6e-27 Identity = 74/107 (69.16%), Postives = 81/107 (75.70%), Query Frame = 0
BLAST of Lsi10G005160 vs. ExPASy TrEMBL
Match: A0A0A0LPS3 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G271490 PE=4 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 5.4e-21 Identity = 62/86 (72.09%), Postives = 68/86 (79.07%), Query Frame = 0
BLAST of Lsi10G005160 vs. ExPASy TrEMBL
Match: A0A6J1D7B4 (VQ motif-containing protein 29 OS=Momordica charantia OX=3673 GN=LOC111017949 PE=4 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 1.7e-19 Identity = 59/95 (62.11%), Postives = 67/95 (70.53%), Query Frame = 0
BLAST of Lsi10G005160 vs. ExPASy TrEMBL
Match: A0A2N9FPV7 (VQ domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20638 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10 Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 0
BLAST of Lsi10G005160 vs. ExPASy TrEMBL
Match: A0A5J4ZYQ3 (VQ domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_013057 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10 Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 0
BLAST of Lsi10G005160 vs. NCBI nr
Match: KAA0045761.1 (VQ motif-containing protein 29 [Cucumis melo var. makuwa] >TYJ99521.1 VQ motif-containing protein 29 [Cucumis melo var. makuwa]) HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26 Identity = 74/107 (69.16%), Postives = 81/107 (75.70%), Query Frame = 0
BLAST of Lsi10G005160 vs. NCBI nr
Match: KAE8651906.1 (hypothetical protein Csa_006780 [Cucumis sativus]) HSP 1 Score: 120.6 bits (301), Expect = 8.2e-24 Identity = 70/104 (67.31%), Postives = 78/104 (75.00%), Query Frame = 0
BLAST of Lsi10G005160 vs. NCBI nr
Match: XP_022149539.1 (VQ motif-containing protein 29 [Momordica charantia]) HSP 1 Score: 105.1 bits (261), Expect = 3.6e-19 Identity = 59/95 (62.11%), Postives = 67/95 (70.53%), Query Frame = 0
BLAST of Lsi10G005160 vs. NCBI nr
Match: KAG6605217.1 (hypothetical protein SDJN03_02534, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 102.4 bits (254), Expect = 2.3e-18 Identity = 55/83 (66.27%), Postives = 64/83 (77.11%), Query Frame = 0
BLAST of Lsi10G005160 vs. NCBI nr
Match: KAA8522582.1 (hypothetical protein F0562_013057 [Nyssa sinensis]) HSP 1 Score: 75.9 bits (185), Expect = 2.3e-10 Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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