Lsi10G004200 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G004200
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	B-box zinc finger family protein
Location	chr10: 6364840 .. 6368982 (-)
RNA-Seq Expression	Lsi10G004200
Synteny	Lsi10G004200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAATTTCAAAAGTTGAGGGCCAAAATATTTTTTTCAACCCAAAAAAAACTGTATTTGTTGTATCCATTGATTCGAGAGTAAAAAAGATAAGTCATAAGTCAACAAAGATGACCGGAGAAGGAAGGATTTTACGCCGTCGTCGTGTCAACGTCGACGATTCAGGCTGCTAATGCGAACTCTTTGCGATATCTGTGAGAGCGCCGCCGCAACCCTCTTCTGCGCCGCCGACGAGGCCGCCCTTTGCCGCTCCTGCGATCAGGAGGTTACTGCTTTACTAACCCTTCTCTCTTTTTCTCCAATCCCTTTTCTTCTCCAATTTTCTATCCGATCATTTTCATCATTGGTTTTCTTGGAAGCATGATTGCCCTACACCACTTAGAAACACACGGAATGGCCTATTTCGTTGTCTTTGGGAGCATGGATATGGATGGTGTATTATTGTGAAGTTGTATGAAGAACTGTTTGGCTCGGATATCACATTTCAATTTCAAACCAATTCCTCTGCTATCAACTATTTGCAGAAGTCTTGTTCATTATTGGTTTAGAATTCTGGATAATTGATGCTATTGGTTTGGATAAGGATTTTCAAATGTGATAGGATCATAGGAATATGGCCCTGCTGCTAATTATAATTTCTCCCAGTTTTTATTATGATCAATCATTCGTCTAGTCTTGTTTGATTACTTTCCATCTCTCAATCCATCTCATTTCCATCTCTTTTTTTGTTCTTGAGAAGCATTTCTAATCTGGGTAAGCTTTAAAACTAGGAACTAGGAAGATAATACTTCTCCTTTACGTGTTCTATAATGTTCGAGACTTTGTTTGAAGAAAATTTTTAACCTCTCCAATTGGAAGAGTTTCTTTTGTGATTCTTTTGTTCTTCTGGTAAGCAGGTGTCTGTTTATTTCATAATTAAGCCTTTAAAACTTACAACTATTATCAAATTTAATATTTTGACTTTTTGGGGGAATATGATCGTATATACTATTTGCATGCATATAAAGTTCATACATACAGAAGCACATACACATACGTATATATGGTTTTTGTTGTTGTTTTCACCATTATTTTTAAATTTTGAGAAAGAGGCCAGAGATGCATATCAAACTTTGAAAAGATAGGGAACTTTGAAGCATAAGAAGAAAGTAAATGGGTGTGGTTTCTTAAAATCTTTTGCTGAGATGCTCTTGTACTCTAGTGCAATAGGTTCACATGTGTAACAAACTTGCTAGGAGACATGTTTGTGTTGGACTGGCTGAACCCCGCGATGTCCTGCTGTGTGATGTATGTGAAACCGCACTTGGTACATGTCTTTTCTAGGAAAATTGTTAGAAATAACCTAAAAAAGTTTTCATTTTTCTAGGGAAATTCATTGAAATAGTTTTTCTCCGTCCTTTCCGGCTGAGATTGACCCGAAGATTCAAATTAAAATTTGACTATACATCCAAATTATTTATTTTTTGGGCTTTGTCGGTGGAATCTCGGTCATAATGAAGACCGAGATTGTATATCTTTCCCAAATCTTACTTAAATCTTTCCCAAAATTTAAAAATCGCACTGTGATTACTCTGAGATCCATTTGGAAAAACCATTTAGAAAATCAGATAATTGTGGAGGTACGATTTGGTATAAGATTTGGAAAGATTACATAATATTTGGAAAAATTATGTAGAGTCTCGGTGTTCATCTTGGTCAAGATTACTATTTCAACTAATTTTCTATAAGGGTGTTAGTTGTAAAAGATAAAAATATTTGAGGGATATTTCTTACAATTTTCCCTTTTCTAGTGTTTGTTTAGTTTCTTTTTTTGGGACTGTATACGTTTAATAGATTATACATGATATGATTAAAGAGTATCTTTATTCTTCAAACAACGGATGTAGCTTTCTTTTACTGTGATATAGATGGTAGCTCCCTATGCTTGCAATGTGATATGATTGTTCATGTTGGAGGCAAAAGATACCCACTTGTTCAGGCCTTATAACAGTTCCATGGACTGATAATCAGGTCTTTCTGTTCTTCTGTTATTAACTAATTGCTTGCTTCATCTTCAATTTTAATCATGAAGATTTATTTATGAAAAATACTGTCCTGAATTCCATGATGATCTTGTTATTATGTTTTCTACTTCAGGAACCGCATGCAAAAGTTCTTCGTGGGTGTAATCTACAACCTGATAAGAGTGTGATGCTTGCAAGATCCTTCAAACAAGAACCTGAAAAAGAATACAAAGGTATATTTTCAATTTCCAGTATGTTGTTCTTCAGACCCTCTTGATATGAAAAATAGGTTGTCATGTAAAAGTGAGGGCATTCAGTAAACACTCAAAGTAACTCAAAGATAAATTAATTGCACTAGTAACTTCCAGTGGAGCTACAGAAAAGACTACAAGCAACTTAATGGCAAATCAAGTAGGAGTCAATATTGGACTCAAATTCAAGAAAGAAGTTGAATGGCAAGAAAGTATTTGAAGGTGCAAGCTGAGATCATAGGTTAGAAAGCAGAGCCAAGAGTGATGAAATCAAGTAGGAGCCAAAAAATTTCTGACCTTGATGAAATGGCCATTTCTCAGGCAAGTGGGTGGTTCCATACCATGCAGTAGTCTCTTTCACTATGGAGATTATATTACAGCTTTGAAATTTAACGTTTTGAACTGTTGATGTGAAATGATAGGGATACTTTTGTAACTTTCTTATCTTAATGCATGAATCACAAAACTTATCGAATTTTCTTTGGGGGTGTTTGGCCTAAGGAATTCATAGGCCCCACGTCTAAAAACCATCAAGGTCATGCCTTATTTTACATTGTGGGCTTCACGATTAAGTAACTCTCCAGACTTCACAACTCCACTCCTTGCTTCAAATGCCCCGTTTTTAGTTTCAAATGAGGCTCTTACAAAACCAATTACTCTTCATAAGATTTATTCCCACCAAATAGATAGAGTTTGCTCGAATTCTATGGTTCATGTATTTCTAGTTTTCTTATATGATTTTAGTTTTTCCATGCACGTATCCTTTCTATAATTAGGTCTTGCATAATTTCTAACATGATATTAAGAAATCTCAATCTCTAGATTATTATTCCTCGAAAGAAAGCCTTATTATATATGCTCGTGATTAATGCAAATTCAAGCATCTTACATAGGATTGAGAAGACCACAAACTAAACTAAAATCATCAACAAAATGTTCATTAAGCTGCTAAGAATACACAAAAATAGTTTTTTTTTTGTTCTTTTTAAATCGCTATAAAGCATCATCATCATAAACACGATAAATAGAGCAATTAGTCTCCCAGTTCAACCAGCATGTTCTTCTTCATCTTCTTGATCTATAGAAAAGCTTAGTACGTGTAGCCCTTGACAAACATTCCCTCCTTGGCTTCGTCAGACTCACCCTCACCGGTGTACTTTCCAAGCTGGGCGAGCGAGTTCGATTTGGCTCGTTGAATCAGAGCATCCTGTGCTGCCTTCACATTCTCTGGCCGGCCACCCCATGTCTTCAAGCAGGTGTTCTGCAGAGCTCTGGCATATGAGAAGGACACATGCCATGGGTTTGGTGCTTGGTTCATGGCGTTCAAGTTCAATGTAGCCTCTACCTCAGATTGCCCACCTGATAAAAACTGTTCCACAACAACAAAAACAACCCAGATTCAGTTCATCATTCATCAAGGTAATCAAACCCAGAAGTTTTCATTCTGTAAAAATTCTTTAAGCTATGTTTAATTGACTTGCCATAATTCCAGGAACAGCTGGAGGGATTCTTCTTTGGAGAAGAGACAGAGTGTACTTTGCAACTGTCTCAGGGCTTGCTCTGTCTTTGCTTTCAGCTCCAGGAGTAACCATGCTTGGTTTCAGAAGAATTCCTTCAAACAGAACATTGTTCTCTGCAAGGTAGAAGAAGACCTCTGCCCAAACTTTCTGTGCTACCTCAAAGGTTCTGTCAATTCCGTGCTCTCCGTCCAGCAAGATCTCTGGCTCCACGATTGGAACCAACCCATTGTCCTGCAAATTGCAACACCCCAATCCAAAATCAAAATCAAGGGACCTTAAATCAAATGGGGTTTCCTTAAAAGATAAGGAGTTTGATTTGTTGAGACCTGGGAGACGGCAGCATAGCGAGCAAGTCCCCAGGCAGCTTCCT

mRNA sequence

ATTAATTTCAAAAGTTGAGGGCCAAAATATTTTTTTCAACCCAAAAAAAACTGTATTTGTTGTATCCATTGATTCGAGAGTAAAAAAGATAAGTCATAAGTCAACAAAGATGACCGGAGAAGGAAGGATTTTACGCCGTCGTCGTGTCAACGTCGACGATTCAGGCTGCTAATGCGAACTCTTTGCGATATCTGTGAGAGCGCCGCCGCAACCCTCTTCTGCGCCGCCGACGAGGCCGCCCTTTGCCGCTCCTGCGATCAGGAGGTTCACATGTGTAACAAACTTGCTAGGAGACATGTTTGTGTTGGACTGGCTGAACCCCGCGATAGTATCTTTATTCTTCAAACAACGGATGTAGCTTTCTTTTACTGTGATATAGATGGTAGCTCCCTATGCTTGCAATGTGATATGATTGTTCATGTTGGAGGCAAAAGATACCCACTTGAACCGCATGCAAAAGTTCTTCGTGGGTGTAATCTACAACCTGATAAGAGTGTGATGCTTGCAAGATCCTTCAAACAAGAACCTGAAAAAGAATACAAAGTAACTTCCAGTGGAGCTACAGAAAAGACTACAAGCAACTTAATGGCAAATCAAACTCACCCTCACCGGTGTACTTTCCAAGCTGGGCGAGCGAGTTCGATTTGGCTCGTTGAATCAGAGCATCCTGTGCTGCCTTCACATTCTCTGGCCGGCCACCCCATGTCTTCAAGCAGAGCTCTGGCATATGAGAAGGACACATGCCATGGGTTTGGTGCTTGGTTCATGGCGTTCAAGTTCAATGTAGCCTCTACCTCAGATTGCCCACCTGATAAAAACTGTTCCACAACAACAAAAACAACCCAGATTCAGTTCATCATTCATCAAGGAACAGCTGGAGGGATTCTTCTTTGGAGAAGAGACAGAGTGTACTTTGCAACTGTCTCAGGGCTTGCTCTGTCTTTGCTTTCAGCTCCAGGAAAGAAGACCTCTGCCCAAACTTTCTGTGCTACCTCAAAGGTTCTGTCAATTCCGTGCTCTCCGTCCAGCAAGATCTCTGGCTCCACGATTGGAACCAACCCATTGTCCTGCAAATTGCAACACCCCAATCCAAAATCAAAATCAAGGGACCTTAAATCAAATGGGGTTTCCTTAAAAGATAAGGAGTTTGATTTGTTGAGACCTGGGAGACGGCAGCATAGCGAGCAAGTCCCCAGGCAGCTTCCT

Coding sequence (CDS)

ATGCGAACTCTTTGCGATATCTGTGAGAGCGCCGCCGCAACCCTCTTCTGCGCCGCCGACGAGGCCGCCCTTTGCCGCTCCTGCGATCAGGAGGTTCACATGTGTAACAAACTTGCTAGGAGACATGTTTGTGTTGGACTGGCTGAACCCCGCGATAGTATCTTTATTCTTCAAACAACGGATGTAGCTTTCTTTTACTGTGATATAGATGGTAGCTCCCTATGCTTGCAATGTGATATGATTGTTCATGTTGGAGGCAAAAGATACCCACTTGAACCGCATGCAAAAGTTCTTCGTGGGTGTAATCTACAACCTGATAAGAGTGTGATGCTTGCAAGATCCTTCAAACAAGAACCTGAAAAAGAATACAAAGTAACTTCCAGTGGAGCTACAGAAAAGACTACAAGCAACTTAATGGCAAATCAAACTCACCCTCACCGGTGTACTTTCCAAGCTGGGCGAGCGAGTTCGATTTGGCTCGTTGAATCAGAGCATCCTGTGCTGCCTTCACATTCTCTGGCCGGCCACCCCATGTCTTCAAGCAGAGCTCTGGCATATGAGAAGGACACATGCCATGGGTTTGGTGCTTGGTTCATGGCGTTCAAGTTCAATGTAGCCTCTACCTCAGATTGCCCACCTGATAAAAACTGTTCCACAACAACAAAAACAACCCAGATTCAGTTCATCATTCATCAAGGAACAGCTGGAGGGATTCTTCTTTGGAGAAGAGACAGAGTGTACTTTGCAACTGTCTCAGGGCTTGCTCTGTCTTTGCTTTCAGCTCCAGGAAAGAAGACCTCTGCCCAAACTTTCTGTGCTACCTCAAAGGTTCTGTCAATTCCGTGCTCTCCGTCCAGCAAGATCTCTGGCTCCACGATTGGAACCAACCCATTGTCCTGCAAATTGCAACACCCCAATCCAAAATCAAAATCAAGGGACCTTAAATCAAATGGGGTTTCCTTAAAAGATAAGGAGTTTGATTTGTTGAGACCTGGGAGACGGCAGCATAGCGAGCAAGTCCCCAGGCAGCTTCCT

Protein sequence

MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDVAFFYCDIDGSSLCLQCDMIVHVGGKRYPLEPHAKVLRGCNLQPDKSVMLARSFKQEPEKEYKVTSSGATEKTTSNLMANQTHPHRCTFQAGRASSIWLVESEHPVLPSHSLAGHPMSSSRALAYEKDTCHGFGAWFMAFKFNVASTSDCPPDKNCSTTTKTTQIQFIIHQGTAGGILLWRRDRVYFATVSGLALSLLSAPGKKTSAQTFCATSKVLSIPCSPSSKISGSTIGTNPLSCKLQHPNPKSKSRDLKSNGVSLKDKEFDLLRPGRRQHSEQVPRQLP

Homology

[Close]

BLAST of Lsi10G004200 vs. ExPASy Swiss-Prot
Match: C0SVM5 (B-box zinc finger protein 19 OS=Arabidopsis thaliana OX=3702 GN=BBX19 PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.4e-30
Identity = 64/89 (71.91%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 1  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDS-IFILQT 60
          MR LCD CE+AAA +FCAADEAALCR CD++VHMCNKLA RHV VGLAEP ++    +  
Sbjct: 1  MRILCDACENAAAIIFCAADEAALCRPCDEKVHMCNKLASRHVRVGLAEPSNAPCCDICE 60

Query: 61 TDVAFFYCDIDGSSLCLQCDMIVHVGGKR 89
             AFFYC+IDGSSLCLQCDM+VHVGGKR
Sbjct: 61 NAPAFFYCEIDGSSLCLQCDMVVHVGGKR 89

[Close]

BLAST of Lsi10G004200 vs. ExPASy Swiss-Prot
Match: Q9SJU5 (B-box zinc finger protein 18 OS=Arabidopsis thaliana OX=3702 GN=BBX18 PE=1 SV=2)

HSP 1 Score: 129.0 bits (323), Expect = 1.0e-28
Identity = 64/90 (71.11%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 1  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRD--SIFILQ 60
          MR LCD CESAAA +FCAADEAALC SCD++VH CNKLA RH+ VGLA+P +  S  I +
Sbjct: 1  MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPSCDICE 60

Query: 61 TTDVAFFYCDIDGSSLCLQCDMIVHVGGKR 89
              AFFYC+IDGSSLCLQCDM+VHVGGKR
Sbjct: 61 NAP-AFFYCEIDGSSLCLQCDMVVHVGGKR 89

[Close]

BLAST of Lsi10G004200 vs. ExPASy Swiss-Prot
Match: Q9SYM2 (B-box zinc finger protein 22 OS=Arabidopsis thaliana OX=3702 GN=BBX22 PE=1 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 2.3e-12
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 1  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTT 60
          M+  C++CE+A AT+ C ADEAALC +CD+++H  NKLA +H  V L+    SI      
Sbjct: 1  MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDIC 60

Query: 61 DVA--FFYCDIDGSSLCLQCDMIVH 84
            A  FF+C  D + LC +CD+ +H
Sbjct: 61 QEASGFFFCLQDRALLCRKCDVAIH 85

[Close]

BLAST of Lsi10G004200 vs. ExPASy Swiss-Prot
Match: Q96288 (B-box zinc finger protein 24 OS=Arabidopsis thaliana OX=3702 GN=BBX24 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.6e-12
Identity = 40/93 (43.01%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 1  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAE-----PRDSIF 60
          M+  CD+CE A AT+ C ADEAALC  CD E+H  NKLA +H  + L       PR  I 
Sbjct: 1  MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDIC 60

Query: 61 ILQTTDVAFFYCDIDGSSLCLQCDMIVHVGGKR 89
                 AF +C  D + LC  CD  +HV   R
Sbjct: 61 ---QEKAAFIFCVEDRALLCRDCDESIHVANSR 90

[Close]

BLAST of Lsi10G004200 vs. ExPASy Swiss-Prot
Match: Q9LQZ7 (B-box zinc finger protein 21 OS=Arabidopsis thaliana OX=3702 GN=BBX21 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.6e-12
Identity = 40/115 (34.78%), Postives = 57/115 (49.57%), Query Frame = 0


Query: 1   MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTT 60
           M+  CD+C+   A++FC ADEA+LC  CD +VH  NKLA +H+   L  P  S       
Sbjct: 1   MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query: 61  DV-----AFFYCDIDGSSLCLQCDMIVHVGGKRYPLEPHAK-VLRGCNLQPDKSV 110
           D+     A  +C  D + LC  CD  +H   +    + H + +L G  L    SV
Sbjct: 61  DICQDKKALLFCQQDRAILCKDCDSSIHAANEH--TKKHDRFLLTGVKLSATSSV 113

[Close]

BLAST of Lsi10G004200 vs. ExPASy TrEMBL
Match: A0A6A6LKK0 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_030571 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.9e-31
Identity = 82/137 (59.85%), Postives = 95/137 (69.34%), Query Frame = 0


Query: 1   MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTT 60
           MRTLCD+CESAAA LFCAADEAALCRSCD++VH+CNKLA RHV VGLA+P D    +   
Sbjct: 1   MRTLCDVCESAAAILFCAADEAALCRSCDEKVHLCNKLASRHVRVGLADPSD----VPRC 60

Query: 61  DV-----AFFYCDIDGSSLCLQCDMIVHVGGK----RYPL------EPHAKVLRGCNLQP 120
           D+     AFFYC+IDGSSLCLQCDMIVHVGGK    RY L      E    V+ G N   
Sbjct: 61  DICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHGRYLLLRQRVEEQGIDVMSGTN-HE 120

Query: 121 DKSVMLARSFKQEPEKE 123
             SV+   SFK+EP+ +
Sbjct: 121 SSSVVPVGSFKREPKSK 132

[Close]

BLAST of Lsi10G004200 vs. ExPASy TrEMBL
Match: A0A6A4L069 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_19834 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.3e-30
Identity = 84/170 (49.41%), Postives = 103/170 (60.59%), Query Frame = 0


Query: 1   MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTT 60
           MRTLCD+CESAAA LFCAADEAALC SCD++VHMCNKLA RHV VGLAEP     ++   
Sbjct: 1   MRTLCDVCESAAAILFCAADEAALCHSCDEKVHMCNKLASRHVRVGLAEPS----VVPRC 60

Query: 61  DV-----AFFYCDIDGSSLCLQCDMIVHVGGKRYPLEPHAKVLRGCNLQPDKSVMLARSF 120
           D+     AFFYC+IDGSSLCLQCDMIVHVGGKR     H + L           +L +  
Sbjct: 61  DICENAPAFFYCEIDGSSLCLQCDMIVHVGGKR----THGRYL-----------VLRQRV 120

Query: 121 KQEPEKEYKVTSSGATEKTTSNLMANQTHPHRCT--FQAGRASSIWLVES 164
           +   +K  ++   G        +  NQ H  R T   Q   ASS+ ++E+
Sbjct: 121 EFPGDKPGRIDELGLQPAELGEMRRNQPHKPRMTENHQNHAASSVLMLEA 151

[Close]

BLAST of Lsi10G004200 vs. ExPASy TrEMBL
Match: M0ZTY8 (B-box zinc finger protein 21 OS=Solanum tuberosum OX=4113 GN=102578169 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.6e-30
Identity = 70/93 (75.27%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 1  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTT 60
          MRTLCD+CESAAA LFCAADEAALCRSCD++VHMCNKLA RHV VGLA+P      +Q  
Sbjct: 1  MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLADPSK----IQRC 60

Query: 61 DV-----AFFYCDIDGSSLCLQCDMIVHVGGKR 89
          D+     AFFYC+IDGSSLCLQCDMIVHVGGKR
Sbjct: 61 DICENAPAFFYCEIDGSSLCLQCDMIVHVGGKR 89

[Close]

BLAST of Lsi10G004200 vs. ExPASy TrEMBL
Match: A0A0V0HZU5 (Putative salt tolerance-like protein-like OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.6e-30
Identity = 70/93 (75.27%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 1  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTT 60
          MRTLCD+CESAAA LFCAADEAALCRSCD++VHMCNKLA RHV VGLA+P      +Q  
Sbjct: 1  MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLADPSK----IQRC 60

Query: 61 DV-----AFFYCDIDGSSLCLQCDMIVHVGGKR 89
          D+     AFFYC+IDGSSLCLQCDMIVHVGGKR
Sbjct: 61 DICENAPAFFYCEIDGSSLCLQCDMIVHVGGKR 89

[Close]

BLAST of Lsi10G004200 vs. ExPASy TrEMBL
Match: M0ZTY6 (Salt-tolerance protein OS=Solanum tuberosum OX=4113 GN=102578169 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.6e-30
Identity = 70/93 (75.27%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 1  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTT 60
          MRTLCD+CESAAA LFCAADEAALCRSCD++VHMCNKLA RHV VGLA+P      +Q  
Sbjct: 1  MRTLCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLADPSK----IQRC 60

Query: 61 DV-----AFFYCDIDGSSLCLQCDMIVHVGGKR 89
          D+     AFFYC+IDGSSLCLQCDMIVHVGGKR
Sbjct: 61 DICENAPAFFYCEIDGSSLCLQCDMIVHVGGKR 89

[Close]

BLAST of Lsi10G004200 vs. NCBI nr
Match: KAF2301940.1 (hypothetical protein GH714_030571 [Hevea brasiliensis])

HSP 1 Score: 145.6 bits (366), Expect = 8.0e-31
Identity = 82/137 (59.85%), Postives = 95/137 (69.34%), Query Frame = 0


Query: 1   MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTT 60
           MRTLCD+CESAAA LFCAADEAALCRSCD++VH+CNKLA RHV VGLA+P D    +   
Sbjct: 1   MRTLCDVCESAAAILFCAADEAALCRSCDEKVHLCNKLASRHVRVGLADPSD----VPRC 60

Query: 61  DV-----AFFYCDIDGSSLCLQCDMIVHVGGK----RYPL------EPHAKVLRGCNLQP 120
           D+     AFFYC+IDGSSLCLQCDMIVHVGGK    RY L      E    V+ G N   
Sbjct: 61  DICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHGRYLLLRQRVEEQGIDVMSGTN-HE 120

Query: 121 DKSVMLARSFKQEPEKE 123
             SV+   SFK+EP+ +
Sbjct: 121 SSSVVPVGSFKREPKSK 132

[Close]

BLAST of Lsi10G004200 vs. NCBI nr
Match: KAF7143522.1 (hypothetical protein RHSIM_Rhsim05G0068400 [Rhododendron simsii])

HSP 1 Score: 142.1 bits (357), Expect = 8.8e-30
Identity = 84/170 (49.41%), Postives = 103/170 (60.59%), Query Frame = 0


Query: 1   MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTT 60
           MRTLCD+CESAAA LFCAADEAALC SCD++VHMCNKLA RHV VGLAEP     ++   
Sbjct: 1   MRTLCDVCESAAAILFCAADEAALCHSCDEKVHMCNKLASRHVRVGLAEPS----VVPRC 60

Query: 61  DV-----AFFYCDIDGSSLCLQCDMIVHVGGKRYPLEPHAKVLRGCNLQPDKSVMLARSF 120
           D+     AFFYC+IDGSSLCLQCDMIVHVGGKR     H + L           +L +  
Sbjct: 61  DICENAPAFFYCEIDGSSLCLQCDMIVHVGGKR----THGRYL-----------VLRQRV 120

Query: 121 KQEPEKEYKVTSSGATEKTTSNLMANQTHPHRCT--FQAGRASSIWLVES 164
           +   +K  ++   G        +  NQ H  R T   Q   ASS+ ++E+
Sbjct: 121 EFPGDKPGRIDELGLQPAELGEMRRNQPHKPRMTENHQNHAASSVLMLEA 151

[Close]

BLAST of Lsi10G004200 vs. NCBI nr
Match: KAG5547830.1 (hypothetical protein RHGRI_013496 [Rhododendron griersonianum])

HSP 1 Score: 142.1 bits (357), Expect = 8.8e-30
Identity = 84/170 (49.41%), Postives = 103/170 (60.59%), Query Frame = 0


Query: 1   MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTT 60
           MRTLCD+CESAAA LFCAADEAALC SCD++VHMCNKLA RHV VGLAEP     ++   
Sbjct: 1   MRTLCDVCESAAAILFCAADEAALCHSCDEKVHMCNKLASRHVRVGLAEPS----VVPRC 60

Query: 61  DV-----AFFYCDIDGSSLCLQCDMIVHVGGKRYPLEPHAKVLRGCNLQPDKSVMLARSF 120
           D+     AFFYC+IDGSSLCLQCDMIVHVGGKR     H + L           +L +  
Sbjct: 61  DICENAPAFFYCEIDGSSLCLQCDMIVHVGGKR----THGRYL-----------VLRQRV 120

Query: 121 KQEPEKEYKVTSSGATEKTTSNLMANQTHPHRCT--FQAGRASSIWLVES 164
           +   +K  ++   G        +  NQ H  R T   Q   ASS+ ++E+
Sbjct: 121 EFPGDKPGRIDELGLQPAELGEMRRNQPHKPRMTENHQNHAASSVLMLEA 151

[Close]

BLAST of Lsi10G004200 vs. NCBI nr
Match: KAE9448278.1 (hypothetical protein C3L33_19834, partial [Rhododendron williamsianum])

HSP 1 Score: 142.1 bits (357), Expect = 8.8e-30
Identity = 84/170 (49.41%), Postives = 103/170 (60.59%), Query Frame = 0


Query: 1   MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTT 60
           MRTLCD+CESAAA LFCAADEAALC SCD++VHMCNKLA RHV VGLAEP     ++   
Sbjct: 1   MRTLCDVCESAAAILFCAADEAALCHSCDEKVHMCNKLASRHVRVGLAEPS----VVPRC 60

Query: 61  DV-----AFFYCDIDGSSLCLQCDMIVHVGGKRYPLEPHAKVLRGCNLQPDKSVMLARSF 120
           D+     AFFYC+IDGSSLCLQCDMIVHVGGKR     H + L           +L +  
Sbjct: 61  DICENAPAFFYCEIDGSSLCLQCDMIVHVGGKR----THGRYL-----------VLRQRV 120

Query: 121 KQEPEKEYKVTSSGATEKTTSNLMANQTHPHRCT--FQAGRASSIWLVES 164
           +   +K  ++   G        +  NQ H  R T   Q   ASS+ ++E+
Sbjct: 121 EFPGDKPGRIDELGLQPAELGEMRRNQPHKPRMTENHQNHAASSVLMLEA 151

[Close]

BLAST of Lsi10G004200 vs. NCBI nr
Match: PHT93528.1 (B-box zinc finger protein 19 [Capsicum annuum])

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-29
Identity = 71/93 (76.34%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 1  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTT 60
          MRTLCD+CESAAA LFCAADEAALCRSCDQ+VHMCNKLA RHV VGLA P      +Q  
Sbjct: 1  MRTLCDVCESAAAILFCAADEAALCRSCDQKVHMCNKLASRHVRVGLAAPSK----IQRC 60

Query: 61 DV-----AFFYCDIDGSSLCLQCDMIVHVGGKR 89
          D+     AFFYC+IDGSSLCLQCDMIVHVGGKR
Sbjct: 61 DICENAPAFFYCEIDGSSLCLQCDMIVHVGGKR 89

[Close]

BLAST of Lsi10G004200 vs. TAIR 10
Match: AT4G38960.1 (B-box type zinc finger family protein )

HSP 1 Score: 133.3 bits (334), Expect = 3.8e-31
Identity = 64/89 (71.91%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 1  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDS-IFILQT 60
          MR LCD CE+AAA +FCAADEAALCR CD++VHMCNKLA RHV VGLAEP ++    +  
Sbjct: 1  MRILCDACENAAAIIFCAADEAALCRPCDEKVHMCNKLASRHVRVGLAEPSNAPCCDICE 60

Query: 61 TDVAFFYCDIDGSSLCLQCDMIVHVGGKR 89
             AFFYC+IDGSSLCLQCDM+VHVGGKR
Sbjct: 61 NAPAFFYCEIDGSSLCLQCDMVVHVGGKR 89

[Close]

BLAST of Lsi10G004200 vs. TAIR 10
Match: AT2G21320.1 (B-box zinc finger family protein )

HSP 1 Score: 129.0 bits (323), Expect = 7.2e-30
Identity = 64/90 (71.11%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 1  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRD--SIFILQ 60
          MR LCD CESAAA +FCAADEAALC SCD++VH CNKLA RH+ VGLA+P +  S  I +
Sbjct: 1  MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPSCDICE 60

Query: 61 TTDVAFFYCDIDGSSLCLQCDMIVHVGGKR 89
              AFFYC+IDGSSLCLQCDM+VHVGGKR
Sbjct: 61 NAP-AFFYCEIDGSSLCLQCDMVVHVGGKR 89

[Close]

BLAST of Lsi10G004200 vs. TAIR 10
Match: AT4G38960.3 (B-box type zinc finger family protein )

HSP 1 Score: 112.5 bits (280), Expect = 7.0e-25
Identity = 64/132 (48.48%), Postives = 73/132 (55.30%), Query Frame = 0


Query: 1   MRTLCDICESAAATLFCAADEAALCRSCDQE----------------------------- 60
           MR LCD CE+AAA +FCAADEAALCR CD++                             
Sbjct: 1   MRILCDACENAAAIIFCAADEAALCRPCDEKALHMRLDISKCSESVKRVQIVETSSLIWW 60

Query: 61  --------------VHMCNKLARRHVCVGLAEPRDS-IFILQTTDVAFFYCDIDGSSLCL 89
                         VHMCNKLA RHV VGLAEP ++    +     AFFYC+IDGSSLCL
Sbjct: 61  IKMGTFCLQSLHLVVHMCNKLASRHVRVGLAEPSNAPCCDICENAPAFFYCEIDGSSLCL 120

[Close]

BLAST of Lsi10G004200 vs. TAIR 10
Match: AT4G38960.2 (B-box type zinc finger family protein )

HSP 1 Score: 80.9 bits (198), Expect = 2.2e-15
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 34 MCNKLARRHVCVGLAEPRDS-IFILQTTDVAFFYCDIDGSSLCLQCDMIVHVGGKR 89
          MCNKLA RHV VGLAEP ++    +     AFFYC+IDGSSLCLQCDM+VHVGGKR
Sbjct: 1  MCNKLASRHVRVGLAEPSNAPCCDICENAPAFFYCEIDGSSLCLQCDMVVHVGGKR 56

[Close]

BLAST of Lsi10G004200 vs. TAIR 10
Match: AT1G78600.1 (light-regulated zinc finger protein 1 )

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-13
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 1  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTT 60
          M+  C++CE+A AT+ C ADEAALC +CD+++H  NKLA +H  V L+    SI      
Sbjct: 1  MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDIC 60

Query: 61 DVA--FFYCDIDGSSLCLQCDMIVH 84
            A  FF+C  D + LC +CD+ +H
Sbjct: 61 QEASGFFFCLQDRALLCRKCDVAIH 85

The following BLAST results are available for this feature:

BLAST of Lsi10G004200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C0SVM5	5.4e-30	71.91	B-box zinc finger protein 19 OS=Arabidopsis thaliana OX=3702 GN=BBX19 PE=1 SV=1	[more]
Q9SJU5	1.0e-28	71.11	B-box zinc finger protein 18 OS=Arabidopsis thaliana OX=3702 GN=BBX18 PE=1 SV=2	[more]
Q9SYM2	2.3e-12	43.53	B-box zinc finger protein 22 OS=Arabidopsis thaliana OX=3702 GN=BBX22 PE=1 SV=2	[more]
Q96288	6.6e-12	43.01	B-box zinc finger protein 24 OS=Arabidopsis thaliana OX=3702 GN=BBX24 PE=1 SV=1	[more]
Q9LQZ7	8.6e-12	34.78	B-box zinc finger protein 21 OS=Arabidopsis thaliana OX=3702 GN=BBX21 PE=1 SV=1	[more]

BLAST of Lsi10G004200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A6LKK0	3.9e-31	59.85	Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_030571 PE=4 SV=1	[more]
A0A6A4L069	4.3e-30	49.41	Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3...	[more]
M0ZTY8	5.6e-30	75.27	B-box zinc finger protein 21 OS=Solanum tuberosum OX=4113 GN=102578169 PE=2 SV=1	[more]
A0A0V0HZU5	5.6e-30	75.27	Putative salt tolerance-like protein-like OS=Solanum chacoense OX=4108 PE=4 SV=1	[more]
M0ZTY6	5.6e-30	75.27	Salt-tolerance protein OS=Solanum tuberosum OX=4113 GN=102578169 PE=4 SV=1	[more]

BLAST of Lsi10G004200 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF2301940.1	8.0e-31	59.85	hypothetical protein GH714_030571 [Hevea brasiliensis]	[more]
KAF7143522.1	8.8e-30	49.41	hypothetical protein RHSIM_Rhsim05G0068400 [Rhododendron simsii]	[more]
KAG5547830.1	8.8e-30	49.41	hypothetical protein RHGRI_013496 [Rhododendron griersonianum]	[more]
KAE9448278.1	8.8e-30	49.41	hypothetical protein C3L33_19834, partial [Rhododendron williamsianum]	[more]
PHT93528.1	1.2e-29	76.34	B-box zinc finger protein 19 [Capsicum annuum]	[more]

BLAST of Lsi10G004200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38960.1	3.8e-31	71.91	B-box type zinc finger family protein	[more]
AT2G21320.1	7.2e-30	71.11	B-box zinc finger family protein	[more]
AT4G38960.3	7.0e-25	48.48	B-box type zinc finger family protein	[more]
AT4G38960.2	2.2e-15	69.64	B-box type zinc finger family protein	[more]
AT1G78600.1	1.6e-13	43.53	light-regulated zinc finger protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000315	B-box-type zinc finger	SMART	SM00336	bboxneu5	coord: 1..47 e-value: 1.1E-6 score: 38.2
IPR000315	B-box-type zinc finger	PFAM	PF00643	zf-B_box	coord: 3..42 e-value: 3.4E-5 score: 23.9
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 1..47 score: 10.39514
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 2..92 e-value: 2.5E-5 score: 26.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 306..337
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 296..345
None	No IPR available	PANTHER	PTHR31832	B-BOX ZINC FINGER PROTEIN 22	coord: 1..141
None	No IPR available	PANTHER	PTHR31832:SF5	B-BOX ZINC FINGER PROTEIN 19	coord: 1..141
None	No IPR available	CDD	cd19821	Bbox1_BBX-like	coord: 4..43 e-value: 7.11939E-16 score: 68.8635

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G004200.1	Lsi10G004200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008270	zinc ion binding