Lsi10G003700 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTAAAGTCAATTTAAGTATAACTTAATAAACAAGACAGTAAATACGATTCTTAAGATCAAATATTTGTTTTTCATTCTACAATTAGTTCAACTCAAAGAAAAAAGAAGTTTATGTAATTGAGTTAAGAAATTGAGTGGACATTTTTATTCTCTGATCGTAGTCTAATAAAACCCACAAAATAAAGTAGGGAGAAAATAAGGAATCTCAAATTAAATTACTCTGGCAATACAAGTAACACATAAATTTCATAAACCAAATACATGGTTGCTATGATTTATTATAAAGACTATAAGTAAATTAGAAAGAAGTTTGGGCTCCCCTTGTGCCGATTGAGTGTAAGGTTAAATGGATCTCGAGGTACATTGATGATATTGTTGTTGTTCCTAGGCTATCAGGTGTGGAGACTTGTGGTGTTCGTGGAAAGGTTGTGTCTAGTCATCGAAGGGGGGAGTGAGTGTTCATTAGGGTGTGCACTGGTGTTTGCCACCACGTGGAGCTCTGAAATTAAATATCGACATTGCTTGTCATCCGGTGAACTCAAAGATGGGGATGGGAGCTGTTGTGCGAGATGATTGTAGGAGAGTCATTACTGCCCATGCTCTTGTTCGTCCAGGTTGTGTATCAGCCAAAGATGGTGAAATTTTTGCTTTTATAGCTGGTTTGAAGTTAGCTGAAGTTCACAGATGCTTAGGGTGTTGGGTGAAGATGGATGCTGAAATTGTGGTGAAGAAGATACAAGTTCTTTCCTTTTCATTAATTCCTAATGGTATATATTATTTATGTTGAAGCATTCTCTTTAATGCAAAGGTTGGGGTTTATGCTCATAGAAGGTGTAATAAGGTGACCCATAATTTGGTCACTCAAGTTATTGTAGCCAATTCTTCTTAGGTTTAGATTGACTGTATTCTCCCTTGGTTCTCAATCATTGTCGGGGCTGAGATGGGGGACTTGGATCTTATTGGATGA ATGATTAAAAAAGAAGTTTGGGCTCCCCTTGTGCCGATTGAGTGTAAGGTTAAATGGATCTCGAGGTACATTGATGATATTGTTGTTGTTCCTAGGCTATCAGGTGTGGAGACTTGTGGTGTTCGTGGAAAGGGTGTGCACTGGTGTTTGCCACCACGTGGAGCTCTGAAATTAAATATCGACATTGCTTGTCATCCGGTGAACTCAAAGATGGGGATGGGAGCTGTTGTGCGAGATGATTGTAGGAGAGTCATTACTGCCCATGCTCTTGTTCGTCCAGGTTGTGTATCAGCCAAAGATGGTGAAATTTTTGCTTTTATAGCTGGTTTGAAGTTAGCTGAAGTTCACAGATGCTTAGGGTGTTGGGTGAAGATGGATGCTGAAATTGTGGTGAAGAAGATACAAATTGACTGTATTCTCCCTTGGTTCTCAATCATTGTCGGGGCTGAGATGGGGGACTTGGATCTTATTGGATGA ATGATTAAAAAAGAAGTTTGGGCTCCCCTTGTGCCGATTGAGTGTAAGGTTAAATGGATCTCGAGGTACATTGATGATATTGTTGTTGTTCCTAGGCTATCAGGTGTGGAGACTTGTGGTGTTCGTGGAAAGGGTGTGCACTGGTGTTTGCCACCACGTGGAGCTCTGAAATTAAATATCGACATTGCTTGTCATCCGGTGAACTCAAAGATGGGGATGGGAGCTGTTGTGCGAGATGATTGTAGGAGAGTCATTACTGCCCATGCTCTTGTTCGTCCAGGTTGTGTATCAGCCAAAGATGGTGAAATTTTTGCTTTTATAGCTGGTTTGAAGTTAGCTGAAGTTCACAGATGCTTAGGGTGTTGGGTGAAGATGGATGCTGAAATTGTGGTGAAGAAGATACAAATTGACTGTATTCTCCCTTGGTTCTCAATCATTGTCGGGGCTGAGATGGGGGACTTGGATCTTATTGGATGA MIKKEVWAPLVPIECKVKWISRYIDDIVVVPRLSGVETCGVRGKGVHWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLAEVHRCLGCWVKMDAEIVVKKIQIDCILPWFSIIVGAEMGDLDLIG Homology
BLAST of Lsi10G003700 vs. ExPASy TrEMBL
Match: M5WZF6 (RNase H domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa020664mg PE=4 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 3.6e-08 Identity = 38/101 (37.62%), Postives = 51/101 (50.50%), Query Frame = 0
BLAST of Lsi10G003700 vs. ExPASy TrEMBL
Match: A0A5D3DDI5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G001030 PE=4 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 5.2e-07 Identity = 32/93 (34.41%), Postives = 52/93 (55.91%), Query Frame = 0
BLAST of Lsi10G003700 vs. ExPASy TrEMBL
Match: A0A803PBY3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 2.6e-06 Identity = 32/93 (34.41%), Postives = 48/93 (51.61%), Query Frame = 0
BLAST of Lsi10G003700 vs. ExPASy TrEMBL
Match: A0A5A7TDE1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00810 PE=4 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 3.4e-06 Identity = 31/93 (33.33%), Postives = 51/93 (54.84%), Query Frame = 0
BLAST of Lsi10G003700 vs. ExPASy TrEMBL
Match: A0A6J5XRX0 (RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS37308 PE=4 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 2.8e-05 Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 0
BLAST of Lsi10G003700 vs. NCBI nr
Match: XP_031091124.1 (uncharacterized protein LOC115996122 [Ipomoea triloba]) HSP 1 Score: 69.3 bits (168), Expect = 3.3e-08 Identity = 38/117 (32.48%), Postives = 58/117 (49.57%), Query Frame = 0
BLAST of Lsi10G003700 vs. NCBI nr
Match: TYK21731.1 (hypothetical protein E5676_scaffold859G001030 [Cucumis melo var. makuwa]) HSP 1 Score: 64.3 bits (155), Expect = 1.1e-06 Identity = 32/93 (34.41%), Postives = 52/93 (55.91%), Query Frame = 0
BLAST of Lsi10G003700 vs. NCBI nr
Match: XP_008229542.1 (PREDICTED: uncharacterized protein LOC103328904 [Prunus mume]) HSP 1 Score: 62.8 bits (151), Expect = 3.1e-06 Identity = 42/121 (34.71%), Postives = 56/121 (46.28%), Query Frame = 0
BLAST of Lsi10G003700 vs. NCBI nr
Match: XP_019163573.1 (PREDICTED: uncharacterized protein LOC109159918 [Ipomoea nil]) HSP 1 Score: 62.4 bits (150), Expect = 4.1e-06 Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 0
BLAST of Lsi10G003700 vs. NCBI nr
Match: KAA0040106.1 (hypothetical protein E6C27_scaffold366G00810 [Cucumis melo var. makuwa]) HSP 1 Score: 61.6 bits (148), Expect = 6.9e-06 Identity = 31/93 (33.33%), Postives = 51/93 (54.84%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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