Lsi10G003480 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G003480
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	CASP-like protein
Location	chr10: 5404666 .. 5407219 (-)
RNA-Seq Expression	Lsi10G003480
Synteny	Lsi10G003480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCAATTCAAGGGAAGAAGCCACGCCCAAAATTCCGCTGTTGATTTGGTTTGGGAAGCTCTGAGAACGTGCCACCCAAATACAAAGAAAACAGCCTCCAACTGTCCATTCCAACGCTCCGCTTCTCTCTTCTCTGCTTTACAGTTACACCATCTCCGCTTTCCCCACCCATTCAAACTTCAAACTCGCCGGAAAAACCCACCCACGAATTCGATCGACCCATTCTTCGTCCGGACCAAATCTTTTCACTACCCAATTGAAATGGGTTCTGTTGATTTGGCTTTGTGCGGCCATGGTCGATCATTGCGGCGATTAAGATGAGTGGTTCTAAAGATTGGAAGAAATGGGGATGTTGCAGTGTTAGGGATTGCTTTCGCCATGGACGCGGTTCCTGGGTCGGTGGGCACTGGTGCCAGTTTCTCTTTAAGATTGGGGCAGACTGTCTTCTCCTCTGCCTCGCTTCTTTTCATGTCATTGGGTGTTGAGTTCTACGGCTACACTGCCTTCTGGTGATTCTCTTTTCTCTTTTTGGATTAATTTGTTTTGATCTGAATGATTTGTTTTTGGATTCTGTTTCTGTGGGGTTTGTTTTTGGGCTCTCTTTGTTGTTGGGGTTTTGGATGATCCCTGGAAGGTGAGGTGATTGGATTTGTAATTCTCTGAAATTAAGTTTTGATGGGATTTGGGTTTGTGTTCTTGAGATGGATGGATTGAGAAGGACTTGATCTTTGTTCCTTTCTTGGCTAATTCGTTTTCATCTTGTAGGGTTTCCATCCATATTTTAGTTAGGATCTGTGAAGCTTTTGAATGTTCTGTTTCAGAAAACTTGTTTTTGATAACACTTGCAATTAGATGTTTTACCCATAAATTTATGCTTTTCGGTAATTTAACATGGTATAAGAGCTTGTGGATTCTATGAGGTTGTAATATTATTCACTATCCAATTAATATTGATTTCCACTTATTGATTCTTCTACCTATTTCAAGTCTACAAGTGAGGGAAGTAATAGAGAATATAATATTAAATTTACTTTCACCTATAAACGTAAGTCTTTTGGTCAATCGGTGATTTAACACTTGCATACTATATTCTAATAAATTATTTGTTCCCTTATAGATTTTAGTCTTGATCTTTGAGCTGTGAGTTTATATAGCTTAAAAAAGAAAGTTTCAATTGCTTCCTGATCTTGATAACATCATTCTTGATATACATGGCTAATAGGTCTATTCAGCTGTCTATTATTTTATTCTAACTCGAACCAACTTAGTTCAATGGACATATTATGTCAGCTTTTTTTGTTAATTGAATTTTTTTAAGATTAAGTAAGTAAATATACAAACTGTTTAAAGTGTTAGGCTGTGAGTTTATAATTTAATATTAATTCCTTGTCATCTTGGCTAGAATGTTCTTTTTTGAGTTCAACGATATGCTGGAGTGAAAATTCGAACCTTTGACTTTTTGGTTGGAGATATTATGTCTTAACCAGTTGTGTTATACTAAAGTTGGCTTGCTAGAATGTCCTTTTCTCTCTCTCAGCTCTCTCCTTTGTGGTGGTCTTCTCTTTGGTGATTCCATTTCTTTCCATGTATAGATGGTTTCCTACTTCATTCATTTTTCTCCATCTGGCATGAGTTTAATACCTCATTCATTCAGTTCAATTGAGACTTATCCATCTAACCATAAACTTTCTTAGGATCTATCTGAATTTGATTGTTTCAAACATGGGTTATATGCAAAGAACTTCATTCAGAATATTTCTATTAACTTTTTATATAGATTTGTGAAAATGTTCTGCTAAAACAAGTGCAGCTTCTATTACTTTACTTGAAAGAAAACCAATGAAGTTCAACAAACAACTCTGCGCAAATATTTCTTAGCTTAACAAGATAAGTCGAGTCGATTGCTAAATAGTTTGTGTGTGATATGTAGGTAATGAGAGTATTCGATTTAAAGTAATATAACTCCCAAAATGAGCCGGATTCGCCCGTCTAAATGTTATTCAGGTTACTCTAGGATTTTGCTTTTGATGTTAATTTTTCCATGGTTGAATTTCATTGCAGCTACCTTGTAACAGTGATGGGTTTAGTCATACCCTGGAGCTTCACTTTGGCATTGGTTGATGGCTACTCCGTTCTCGTAAAATGTCCTCTTCGACAACCCGGAATACTCGCGATCATCGTCGTTGGAGATTGGGTAAGTACTTCTCAAATTGCATTAAACTTTCGGTTTTCAGATGCTTGAGTTGTTGTTTTGAAAACGTATGCATGGAGAACAGGTCCTGTCCCTTCTCACATTAGCTGCTGCTTGCTCGACAGCAAGCGTCGTCGATATTCTTCTTCACTCGGACAGTTCGTATTGCCCGTCGAAGCTCTGCAGGAGATATCAAATATCTGCTGCCATGGCTTTCTTTTCATGGTTTTTGTCTTTTGCTTCTTCCCTTTTCAATCTTTGGTTACTTCCATCCTTATAGTCTCTAGTCATTATGACTCCCAAGTTCTAATTTGCAGAAGTTTTTGTTTTTTGTGTTTTTTGTGTTTTTTGTGTTTTTTTTTT

mRNA sequence

GGCCAATTCAAGGGAAGAAGCCACGCCCAAAATTCCGCTGTTGATTTGGTTTGGGAAGCTCTGAGAACGTGCCACCCAAATACAAAGAAAACAGCCTCCAACTGTCCATTCCAACGCTCCGCTTCTCTCTTCTCTGCTTTACAGTTACACCATCTCCGCTTTCCCCACCCATTCAAACTTCAAACTCGCCGGAAAAACCCACCCACGAATTCGATCGACCCATTCTTCGTCCGGACCAAATCTTTTCACTACCCAATTGAAATGGGTTCTGTTGATTTGGCTTTGTGCGGCCATGGTCGATCATTGCGGCGATTAAGATGAGTGGTTCTAAAGATTGGAAGAAATGGGGATGTTGCAGTGTTAGGGATTGCTTTCGCCATGGACGCGGTTCCTGGGTCGGTGGGCACTGGTGCCAGTTTCTCTTTAAGATTGGGGCAGACTGTCTTCTCCTCTGCCTCGCTTCTTTTCATGTCATTGGGTGTTGAGTTCTACGGCTACACTGCCTTCTGGGTTTCCATCCATATTTTAGTTAGGATCTATAAGTCGAGTCGATTGCTAAATAGTTTGTGTGTGATATGTAGCTACCTTGTAACAGTGATGGGTTTAGTCATACCCTGGAGCTTCACTTTGGCATTGGTTGATGGCTACTCCGTTCTCGTAAAATGTCCTCTTCGACAACCCGGAATACTCGCGATCATCGTCGTTGGAGATTGGGTCCTGTCCCTTCTCACATTAGCTGCTGCTTGCTCGACAGCAAGCGTCGTCGATATTCTTCTTCACTCGGACAGTTCGTATTGCCCGTCGAAGCTCTGCAGGAGATATCAAATATCTGCTGCCATGGCTTTCTTTTCATGGTTTTTGTCTTTTGCTTCTTCCCTTTTCAATCTTTGGTTACTTCCATCCTTATAGTCTCTAGTCATTATGACTCCCAAGTTCTAATTTGCAGAAGTTTTTGTTTTTTGTGTTTTTTGTGTTTTTTGTGTTTTTTTTTT

Coding sequence (CDS)

ATGGACGCGGTTCCTGGGTCGGTGGGCACTGGTGCCAGTTTCTCTTTAAGATTGGGGCAGACTGTCTTCTCCTCTGCCTCGCTTCTTTTCATGTCATTGGGTGTTGAGTTCTACGGCTACACTGCCTTCTGGGTTTCCATCCATATTTTAGTTAGGATCTATAAGTCGAGTCGATTGCTAAATAGTTTGTGTGTGATATGTAGCTACCTTGTAACAGTGATGGGTTTAGTCATACCCTGGAGCTTCACTTTGGCATTGGTTGATGGCTACTCCGTTCTCGTAAAATGTCCTCTTCGACAACCCGGAATACTCGCGATCATCGTCGTTGGAGATTGGGTCCTGTCCCTTCTCACATTAGCTGCTGCTTGCTCGACAGCAAGCGTCGTCGATATTCTTCTTCACTCGGACAGTTCGTATTGCCCGTCGAAGCTCTGCAGGAGATATCAAATATCTGCTGCCATGGCTTTCTTTTCATGGTTTTTGTCTTTTGCTTCTTCCCTTTTCAATCTTTGGTTACTTCCATCCTTATAG

Protein sequence

MDAVPGSVGTGASFSLRLGQTVFSSASLLFMSLGVEFYGYTAFWVSIHILVRIYKSSRLLNSLCVICSYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLAAACSTASVVDILLHSDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL

Homology

[Close]

BLAST of Lsi10G003480 vs. ExPASy Swiss-Prot
Match: Q10EJ2 (CASP-like protein 5C1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0767900 PE=2 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.2e-43
Identity = 94/170 (55.29%), Postives = 120/170 (70.59%), Query Frame = 0


Query: 6   GSVGTGASFSLRLGQTVFSSASLLFMSLGVEFYGYTAFWVSIHILVRIYKSSRLLNSLCV 65
           G+VG+  S  LR+GQ VFSSASLLFMS+GVEF+ YTAF                      
Sbjct: 10  GAVGSAGSLGLRVGQAVFSSASLLFMSVGVEFFSYTAF---------------------- 69

Query: 66  ICSYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLAAACST 125
              +LVT+MGLVIPWS TLA++D YS+LV CPLR PG++ I+V+GDWVL++L+LAAA S+
Sbjct: 70  --CFLVTIMGLVIPWSCTLAMIDVYSILVGCPLRVPGVMVIVVIGDWVLAILSLAAASSS 129

Query: 126 ASVVDILLHSDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPS 176
           A+V+D+LL    S+C  + C RYQ+SA MAF SWFL+ ASSLFNLW + S
Sbjct: 130 AAVIDLLLQFHGSHCSPRFCGRYQLSAMMAFLSWFLTAASSLFNLWFIAS 155

[Close]

BLAST of Lsi10G003480 vs. ExPASy Swiss-Prot
Match: B8BPI2 (CASP-like protein 5C1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_38237 PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.8e-42
Identity = 93/170 (54.71%), Postives = 119/170 (70.00%), Query Frame = 0


Query: 6   GSVGTGASFSLRLGQTVFSSASLLFMSLGVEFYGYTAFWVSIHILVRIYKSSRLLNSLCV 65
           G+VG+  S  LR+ Q VFSSASLLFMS+GVEF+ YTAF                      
Sbjct: 10  GAVGSAGSLGLRVEQAVFSSASLLFMSVGVEFFSYTAF---------------------- 69

Query: 66  ICSYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLAAACST 125
              +LVT+MGLVIPWS TLA++D YS+LV CPLR PG++ I+V+GDWVL++L+LAAA S+
Sbjct: 70  --CFLVTIMGLVIPWSCTLAMIDVYSILVGCPLRVPGVMVIVVIGDWVLAILSLAAASSS 129

Query: 126 ASVVDILLHSDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPS 176
           A+V+D+LL    S+C  + C RYQ+SA MAF SWFL+ ASSLFNLW + S
Sbjct: 130 AAVIDLLLQFHGSHCSPRFCGRYQLSAMMAFLSWFLTAASSLFNLWFIAS 155

[Close]

BLAST of Lsi10G003480 vs. ExPASy Swiss-Prot
Match: Q3ECT8 (CASP-like protein 5C3 OS=Arabidopsis thaliana OX=3702 GN=At1g49405 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 7.2e-39
Identity = 94/176 (53.41%), Postives = 117/176 (66.48%), Query Frame = 0


Query: 1   MDAVPGSVGTGASFSLRLGQTVFSSASLLFMSLGVEFYGYTAFWVSIHILVRIYKSSRLL 60
           M  VPGSVGT AS SLRLGQ V +  SLLFM++GV FY +TAF                 
Sbjct: 1   MVEVPGSVGTTASLSLRLGQMVLAFGSLLFMTIGVRFYQFTAF----------------- 60

Query: 61  NSLCVICSYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA 120
                   YLVT+M L IPW+ TLA+VD Y V+++ P ++P IL  I +GDWV+S+L LA
Sbjct: 61  -------CYLVTIMSLAIPWNLTLAMVDIYCVILQQPFQKPRILLAISIGDWVVSVLALA 120

Query: 121 AACSTASVVDILLHSDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 177
           +A S ASVVDIL  ++SS CP  +C RYQ +A +AF +WFLS +SSLFNLWLLPSL
Sbjct: 121 SASSAASVVDILRSNESS-CPPTICNRYQFAATLAFLTWFLSLSSSLFNLWLLPSL 151

[Close]

BLAST of Lsi10G003480 vs. ExPASy Swiss-Prot
Match: B6U300 (CASP-like protein 5C1 OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 160.2 bits (404), Expect = 2.1e-38
Identity = 89/170 (52.35%), Postives = 112/170 (65.88%), Query Frame = 0


Query: 6   GSVGTGASFSLRLGQTVFSSASLLFMSLGVEFYGYTAFWVSIHILVRIYKSSRLLNSLCV 65
           G+VG+  S  LR+GQ VFSSASLLFMS+GVEF+ YTAF                      
Sbjct: 12  GAVGSAGSLGLRVGQAVFSSASLLFMSVGVEFFSYTAF---------------------- 71

Query: 66  ICSYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLAAACST 125
              +LVT+MGLVIPWS TLA++D YSV V CPLR PG++ I+VVGD  LS+++ AAACS+
Sbjct: 72  --CFLVTIMGLVIPWSCTLAMIDVYSVFVGCPLRVPGVMVIVVVGDCALSIVSFAAACSS 131

Query: 126 ASVVDILLHSDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPS 176
           A+V+D+LL    S+     C RYQ+SA MAF SW L  AS+ FNLW + S
Sbjct: 132 AAVIDLLLQLHGSHSSPTFCGRYQLSAMMAFLSWLLMAASATFNLWFVAS 157

[Close]

BLAST of Lsi10G003480 vs. ExPASy Swiss-Prot
Match: D7LTJ4 (CASP-like protein ARALYDRAFT_485429 OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_485429 PE=3 SV=2)

HSP 1 Score: 146.4 bits (368), Expect = 3.1e-34
Identity = 83/176 (47.16%), Postives = 106/176 (60.23%), Query Frame = 0


Query: 1   MDAVPGSVGTGASFSLRLGQTVFSSASLLFMSLGVEFYGYTAFWVSIHILVRIYKSSRLL 60
           M+ VPGS GT ASF+LR GQT+FS+ASL+FM    +FY +T F                 
Sbjct: 1   MENVPGSFGTSASFALRFGQTIFSAASLIFMCFDYDFYDFTTF----------------- 60

Query: 61  NSLCVICSYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA 120
                   YL TVM +V PWS  LAL D YSVLVK   ++  +L+I+  GD+VLS L+L 
Sbjct: 61  -------CYLATVMAIVTPWSILLALTDTYSVLVKLLPQELRVLSIVFAGDFVLSFLSLG 120

Query: 121 AACSTASVVDILLHSDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 177
            AC+ AS  ++L  +D   C   LC +YQ+SAA+AF  WFL  AS+LFN W LPSL
Sbjct: 121 GACAVASATELLASADGKICDGNLCIQYQVSAALAFLCWFLLLASALFNFWSLPSL 152

[Close]

BLAST of Lsi10G003480 vs. ExPASy TrEMBL
Match: A0A0A0LP49 (CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G239410 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 4.5e-68
Identity = 148/176 (84.09%), Postives = 148/176 (84.09%), Query Frame = 0


Query: 1   MDAVPGSVGTGASFSLRLGQTVFSSASLLFMSLGVEFYGYTAFWVSIHILVRIYKSSRLL 60
           MDAVPGSVGTGASFSLRLGQT FSSASLLFMSLGVEFY YTAF                 
Sbjct: 1   MDAVPGSVGTGASFSLRLGQTAFSSASLLFMSLGVEFYSYTAF----------------- 60

Query: 61  NSLCVICSYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA 120
                   YLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA
Sbjct: 61  -------CYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA 120

Query: 121 AACSTASVVDILLHSDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 177
           AACSTASVVDILLH DSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL
Sbjct: 121 AACSTASVVDILLHLDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 152

[Close]

BLAST of Lsi10G003480 vs. ExPASy TrEMBL
Match: A0A5D3CT75 (CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G001600 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.3e-67
Identity = 147/176 (83.52%), Postives = 147/176 (83.52%), Query Frame = 0


Query: 1   MDAVPGSVGTGASFSLRLGQTVFSSASLLFMSLGVEFYGYTAFWVSIHILVRIYKSSRLL 60
           MDAVPGSVGTGASFSLRLGQT FSSASLLFMSLGVEFY YTAF                 
Sbjct: 14  MDAVPGSVGTGASFSLRLGQTAFSSASLLFMSLGVEFYSYTAF----------------- 73

Query: 61  NSLCVICSYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA 120
                   YLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA
Sbjct: 74  -------CYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA 133

Query: 121 AACSTASVVDILLHSDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 177
           AACSTASVVDILLH D SYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL
Sbjct: 134 AACSTASVVDILLHLDGSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 165

[Close]

BLAST of Lsi10G003480 vs. ExPASy TrEMBL
Match: A0A1S3CB03 (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103498442 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.3e-67
Identity = 147/176 (83.52%), Postives = 147/176 (83.52%), Query Frame = 0


Query: 1   MDAVPGSVGTGASFSLRLGQTVFSSASLLFMSLGVEFYGYTAFWVSIHILVRIYKSSRLL 60
           MDAVPGSVGTGASFSLRLGQT FSSASLLFMSLGVEFY YTAF                 
Sbjct: 1   MDAVPGSVGTGASFSLRLGQTAFSSASLLFMSLGVEFYSYTAF----------------- 60

Query: 61  NSLCVICSYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA 120
                   YLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA
Sbjct: 61  -------CYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA 120

Query: 121 AACSTASVVDILLHSDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 177
           AACSTASVVDILLH D SYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL
Sbjct: 121 AACSTASVVDILLHLDGSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 152

[Close]

BLAST of Lsi10G003480 vs. ExPASy TrEMBL
Match: A0A6J1G621 (CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111451131 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 6.5e-67
Identity = 144/176 (81.82%), Postives = 146/176 (82.95%), Query Frame = 0


Query: 1   MDAVPGSVGTGASFSLRLGQTVFSSASLLFMSLGVEFYGYTAFWVSIHILVRIYKSSRLL 60
           MD VPGSVGTG SFSLRLGQTVFSSASLLFMSLG+EFY YTAF                 
Sbjct: 1   MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAF----------------- 60

Query: 61  NSLCVICSYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA 120
                   YLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGIL II+VGDWVLSLLTLA
Sbjct: 61  -------CYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLA 120

Query: 121 AACSTASVVDILLHSDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 177
           AACSTASVVDILLHSDSSYCPSKLCRRYQISAAMAF SWFLSFASSLFNLWLLPSL
Sbjct: 121 AACSTASVVDILLHSDSSYCPSKLCRRYQISAAMAFLSWFLSFASSLFNLWLLPSL 152

[Close]

BLAST of Lsi10G003480 vs. ExPASy TrEMBL
Match: A0A6J1KXG7 (CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111499660 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.7e-65
Identity = 142/176 (80.68%), Postives = 145/176 (82.39%), Query Frame = 0


Query: 1   MDAVPGSVGTGASFSLRLGQTVFSSASLLFMSLGVEFYGYTAFWVSIHILVRIYKSSRLL 60
           MD VPGSVGTG SFSLRLGQTVFSSASLLFMSLG+EFY YTAF                 
Sbjct: 1   MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAF----------------- 60

Query: 61  NSLCVICSYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA 120
                   YLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGIL II+VGDWVLSLLTLA
Sbjct: 61  -------CYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLA 120

Query: 121 AACSTASVVDILLHSDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 177
           AACSTASVVDILL SDSSYCPSKLCRRYQISAAMAF SWFLS+ASSLFNLWLLPSL
Sbjct: 121 AACSTASVVDILLLSDSSYCPSKLCRRYQISAAMAFLSWFLSYASSLFNLWLLPSL 152

[Close]

BLAST of Lsi10G003480 vs. NCBI nr
Match: XP_038901622.1 (CASP-like protein 5C1 [Benincasa hispida])

HSP 1 Score: 270.0 bits (689), Expect = 1.4e-68
Identity = 149/176 (84.66%), Postives = 150/176 (85.23%), Query Frame = 0


Query: 1   MDAVPGSVGTGASFSLRLGQTVFSSASLLFMSLGVEFYGYTAFWVSIHILVRIYKSSRLL 60
           MDAVPGSVGTGASFSLRLGQTVFSSASLLFMS+GVEFY YTAF                 
Sbjct: 1   MDAVPGSVGTGASFSLRLGQTVFSSASLLFMSVGVEFYSYTAF----------------- 60

Query: 61  NSLCVICSYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA 120
                   YLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA
Sbjct: 61  -------CYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA 120

Query: 121 AACSTASVVDILLHSDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 177
           AACSTASVVDILLHSDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL
Sbjct: 121 AACSTASVVDILLHSDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 152

[Close]

BLAST of Lsi10G003480 vs. NCBI nr
Match: XP_004145336.1 (CASP-like protein 5C1 [Cucumis sativus] >KGN61776.1 hypothetical protein Csa_006746 [Cucumis sativus])

HSP 1 Score: 267.3 bits (682), Expect = 9.3e-68
Identity = 148/176 (84.09%), Postives = 148/176 (84.09%), Query Frame = 0


Query: 1   MDAVPGSVGTGASFSLRLGQTVFSSASLLFMSLGVEFYGYTAFWVSIHILVRIYKSSRLL 60
           MDAVPGSVGTGASFSLRLGQT FSSASLLFMSLGVEFY YTAF                 
Sbjct: 1   MDAVPGSVGTGASFSLRLGQTAFSSASLLFMSLGVEFYSYTAF----------------- 60

Query: 61  NSLCVICSYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA 120
                   YLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA
Sbjct: 61  -------CYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA 120

Query: 121 AACSTASVVDILLHSDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 177
           AACSTASVVDILLH DSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL
Sbjct: 121 AACSTASVVDILLHLDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 152

[Close]

BLAST of Lsi10G003480 vs. NCBI nr
Match: XP_008459268.1 (PREDICTED: CASP-like protein 5C1 [Cucumis melo])

HSP 1 Score: 265.8 bits (678), Expect = 2.7e-67
Identity = 147/176 (83.52%), Postives = 147/176 (83.52%), Query Frame = 0


Query: 1   MDAVPGSVGTGASFSLRLGQTVFSSASLLFMSLGVEFYGYTAFWVSIHILVRIYKSSRLL 60
           MDAVPGSVGTGASFSLRLGQT FSSASLLFMSLGVEFY YTAF                 
Sbjct: 1   MDAVPGSVGTGASFSLRLGQTAFSSASLLFMSLGVEFYSYTAF----------------- 60

Query: 61  NSLCVICSYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA 120
                   YLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA
Sbjct: 61  -------CYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA 120

Query: 121 AACSTASVVDILLHSDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 177
           AACSTASVVDILLH D SYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL
Sbjct: 121 AACSTASVVDILLHLDGSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 152

[Close]

BLAST of Lsi10G003480 vs. NCBI nr
Match: KAA0045942.1 (CASP-like protein 5C1 [Cucumis melo var. makuwa] >TYK13646.1 CASP-like protein 5C1 [Cucumis melo var. makuwa])

HSP 1 Score: 265.8 bits (678), Expect = 2.7e-67
Identity = 147/176 (83.52%), Postives = 147/176 (83.52%), Query Frame = 0


Query: 1   MDAVPGSVGTGASFSLRLGQTVFSSASLLFMSLGVEFYGYTAFWVSIHILVRIYKSSRLL 60
           MDAVPGSVGTGASFSLRLGQT FSSASLLFMSLGVEFY YTAF                 
Sbjct: 14  MDAVPGSVGTGASFSLRLGQTAFSSASLLFMSLGVEFYSYTAF----------------- 73

Query: 61  NSLCVICSYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA 120
                   YLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA
Sbjct: 74  -------CYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA 133

Query: 121 AACSTASVVDILLHSDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 177
           AACSTASVVDILLH D SYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL
Sbjct: 134 AACSTASVVDILLHLDGSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 165

[Close]

BLAST of Lsi10G003480 vs. NCBI nr
Match: XP_022947184.1 (CASP-like protein 5C1 [Cucurbita moschata] >XP_023533781.1 CASP-like protein 5C1 [Cucurbita pepo subsp. pepo] >KAG6605092.1 CASP-like protein 5C1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 263.5 bits (672), Expect = 1.3e-66
Identity = 144/176 (81.82%), Postives = 146/176 (82.95%), Query Frame = 0


Query: 1   MDAVPGSVGTGASFSLRLGQTVFSSASLLFMSLGVEFYGYTAFWVSIHILVRIYKSSRLL 60
           MD VPGSVGTG SFSLRLGQTVFSSASLLFMSLG+EFY YTAF                 
Sbjct: 1   MDVVPGSVGTGGSFSLRLGQTVFSSASLLFMSLGIEFYSYTAF----------------- 60

Query: 61  NSLCVICSYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA 120
                   YLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGIL II+VGDWVLSLLTLA
Sbjct: 61  -------CYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILTIIIVGDWVLSLLTLA 120

Query: 121 AACSTASVVDILLHSDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 177
           AACSTASVVDILLHSDSSYCPSKLCRRYQISAAMAF SWFLSFASSLFNLWLLPSL
Sbjct: 121 AACSTASVVDILLHSDSSYCPSKLCRRYQISAAMAFLSWFLSFASSLFNLWLLPSL 152

[Close]

BLAST of Lsi10G003480 vs. TAIR 10
Match: AT1G49405.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 161.8 bits (408), Expect = 5.1e-40
Identity = 94/176 (53.41%), Postives = 117/176 (66.48%), Query Frame = 0


Query: 1   MDAVPGSVGTGASFSLRLGQTVFSSASLLFMSLGVEFYGYTAFWVSIHILVRIYKSSRLL 60
           M  VPGSVGT AS SLRLGQ V +  SLLFM++GV FY +TAF                 
Sbjct: 1   MVEVPGSVGTTASLSLRLGQMVLAFGSLLFMTIGVRFYQFTAF----------------- 60

Query: 61  NSLCVICSYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA 120
                   YLVT+M L IPW+ TLA+VD Y V+++ P ++P IL  I +GDWV+S+L LA
Sbjct: 61  -------CYLVTIMSLAIPWNLTLAMVDIYCVILQQPFQKPRILLAISIGDWVVSVLALA 120

Query: 121 AACSTASVVDILLHSDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 177
           +A S ASVVDIL  ++SS CP  +C RYQ +A +AF +WFLS +SSLFNLWLLPSL
Sbjct: 121 SASSAASVVDILRSNESS-CPPTICNRYQFAATLAFLTWFLSLSSSLFNLWLLPSL 151

[Close]

BLAST of Lsi10G003480 vs. TAIR 10
Match: AT3G50810.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-34
Identity = 82/176 (46.59%), Postives = 105/176 (59.66%), Query Frame = 0


Query: 1   MDAVPGSVGTGASFSLRLGQTVFSSASLLFMSLGVEFYGYTAFWVSIHILVRIYKSSRLL 60
           M+ VPGS GT ASF+LR GQT+FS+ASL+FM    +FY +T F                 
Sbjct: 1   MEHVPGSFGTSASFALRFGQTIFSAASLIFMCFDFDFYDFTTF----------------- 60

Query: 61  NSLCVICSYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA 120
                   YL  VM +V PWS  LAL D YSVLVK   ++  +L+I+  GD+VLS L+L 
Sbjct: 61  -------CYLAMVMAIVTPWSILLALTDTYSVLVKLLPQELRVLSIVFAGDFVLSFLSLG 120

Query: 121 AACSTASVVDILLHSDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 177
            AC+ AS  ++L  +D   C   LC +YQ+SAA+AF  WFL  AS+LFN W LPSL
Sbjct: 121 GACAVASATELLASADGKICDGSLCIQYQVSAALAFLCWFLLLASALFNFWSLPSL 152

[Close]

BLAST of Lsi10G003480 vs. TAIR 10
Match: AT4G37235.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 131.3 bits (329), Expect = 7.4e-31
Identity = 87/172 (50.58%), Postives = 105/172 (61.05%), Query Frame = 0


Query: 7   SVGTGASFSLRLGQTVFSSASLLFMSLG--VEFYGYTAFWVSIHILVRIYKSSRLLNSLC 66
           S GT +SF LRLGQT+FSSASLLFM      +FY YT F                     
Sbjct: 7   SFGTSSSFVLRLGQTLFSSASLLFMCFNDDEDFYAYTTF--------------------- 66

Query: 67  VICSYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLAAACS 126
               YLVTVMGLV PWS TLAL++ YS+LVK    Q  ++++IV GD+VLS L+L  ACS
Sbjct: 67  ---CYLVTVMGLVTPWSVTLALMEAYSILVKKLPMQATVISVIVAGDFVLSFLSLGGACS 126

Query: 127 TASVVDILLHSDSSYCPSKLCRRYQISAAMAFFSWFLSFASSLFNLWLLPSL 177
           TASV  +L+ +       K C RY++SA MAF S FLSFAS+ FN  LLPSL
Sbjct: 127 TASVAVLLMDAG-----EKQCDRYKLSATMAFLSSFLSFASTFFNFCLLPSL 149

[Close]

BLAST of Lsi10G003480 vs. TAIR 10
Match: AT5G02060.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 98.2 bits (243), Expect = 6.9e-21
Identity = 68/176 (38.64%), Postives = 94/176 (53.41%), Query Frame = 0


Query: 1   MDAVPGSVGTGASFSLRLGQTVFSSASLLFMSLGVEFYGYTAFWVSIHILVRIYKSSRLL 60
           M  + GS GT +   LRLGQ   ++AS+  M    +F  YTAF                 
Sbjct: 1   MKKMIGSPGTMSGLILRLGQCATAAASIGVMVSSYDFSNYTAF----------------- 60

Query: 61  NSLCVICSYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLA 120
                   +LV  MGL + WSF LA +D Y++  K  LR P +L++  VGDWV +LL LA
Sbjct: 61  -------CFLVASMGLQLIWSFGLACLDVYAIRRKSDLRSPILLSLFTVGDWVTALLALA 120

Query: 121 AACSTASVVDILLHSDSSYC---PSKLCRRYQISAAMAFFSWFLSFASSLFNLWLL 174
           AACS+A V  +L   D+ +C   P+  C R+QIS  ++FF+WFL+  SS    W+L
Sbjct: 121 AACSSAGVT-VLFTKDTEFCRQQPALSCDRFQISVGLSFFNWFLAAISSHTMFWIL 151

[Close]

BLAST of Lsi10G003480 vs. TAIR 10
Match: AT3G23200.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-18
Identity = 61/173 (35.26%), Postives = 90/173 (52.02%), Query Frame = 0


Query: 4   VPGSVGTGASFSLRLGQTVFSSASLLFMSLGVEFYGYTAFWVSIHILVRIYKSSRLLNSL 63
           +PG+ GT     LR+ Q VF++ S+ +M     F+ +TAF                    
Sbjct: 4   IPGTPGTLTGLVLRISQCVFAAGSISYMVTSGGFFSFTAF-------------------- 63

Query: 64  CVICSYLVTVMGLVIPWSFTLALVDGYSVLVKCPLRQPGILAIIVVGDWVLSLLTLAAAC 123
                YL+  MGL + WSF LA++D ++++ K  L  P ++++ VVGDWV S L+LA A 
Sbjct: 64  ----CYLIAAMGLQVIWSFGLAILDTFALVRKKTLLSPVLVSLFVVGDWVTSTLSLAGAS 123

Query: 124 STASVVDILLHSDSSYCPSKL-CRRYQISAAMAFFSWFLSFASSLFNLWLLPS 176
           S+A +  +L   D   C  +  C +YQ+S A+AF  W     SSL  LWLL S
Sbjct: 124 SSAGIT-VLYFGDLGSCSFEAECWKYQLSVALAFLCWITIAVSSLTTLWLLAS 151

The following BLAST results are available for this feature:

BLAST of Lsi10G003480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q10EJ2	2.2e-43	55.29	CASP-like protein 5C1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0767900 P...	[more]
B8BPI2	1.8e-42	54.71	CASP-like protein 5C1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_38237 PE=2 S...	[more]
Q3ECT8	7.2e-39	53.41	CASP-like protein 5C3 OS=Arabidopsis thaliana OX=3702 GN=At1g49405 PE=2 SV=1	[more]
B6U300	2.1e-38	52.35	CASP-like protein 5C1 OS=Zea mays OX=4577 PE=2 SV=2	[more]
D7LTJ4	3.1e-34	47.16	CASP-like protein ARALYDRAFT_485429 OS=Arabidopsis lyrata subsp. lyrata OX=81972...	[more]

BLAST of Lsi10G003480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LP49	4.5e-68	84.09	CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G239410 PE=3 SV=1	[more]
A0A5D3CT75	1.3e-67	83.52	CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00...	[more]
A0A1S3CB03	1.3e-67	83.52	CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103498442 PE=3 SV=1	[more]
A0A6J1G621	6.5e-67	81.82	CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111451131 PE=3 SV=1	[more]
A0A6J1KXG7	2.7e-65	80.68	CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111499660 PE=3 SV=1	[more]

BLAST of Lsi10G003480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901622.1	1.4e-68	84.66	CASP-like protein 5C1 [Benincasa hispida]	[more]
XP_004145336.1	9.3e-68	84.09	CASP-like protein 5C1 [Cucumis sativus] >KGN61776.1 hypothetical protein Csa_006...	[more]
XP_008459268.1	2.7e-67	83.52	PREDICTED: CASP-like protein 5C1 [Cucumis melo]	[more]
KAA0045942.1	2.7e-67	83.52	CASP-like protein 5C1 [Cucumis melo var. makuwa] >TYK13646.1 CASP-like protein 5...	[more]
XP_022947184.1	1.3e-66	81.82	CASP-like protein 5C1 [Cucurbita moschata] >XP_023533781.1 CASP-like protein 5C1...	[more]

BLAST of Lsi10G003480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49405.1	5.1e-40	53.41	Uncharacterised protein family (UPF0497)	[more]
AT3G50810.1	1.1e-34	46.59	Uncharacterised protein family (UPF0497)	[more]
AT4G37235.1	7.4e-31	50.58	Uncharacterised protein family (UPF0497)	[more]
AT5G02060.1	6.9e-21	38.64	Uncharacterised protein family (UPF0497)	[more]
AT3G23200.1	1.4e-18	35.26	Uncharacterised protein family (UPF0497)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006702	Casparian strip membrane protein domain	PFAM	PF04535	DUF588	coord: 9..161 e-value: 5.3E-17 score: 62.0
IPR045009	CASP-like protein 5	PANTHER	PTHR32021	CASP-LIKE PROTEIN 5B3	coord: 1..50
IPR045009	CASP-like protein 5	PANTHER	PTHR32021	CASP-LIKE PROTEIN 5B3	coord: 66..175
None	No IPR available	PANTHER	PTHR32021:SF32	CASP-LIKE PROTEIN 5C3	coord: 66..175
None	No IPR available	PANTHER	PTHR32021:SF32	CASP-LIKE PROTEIN 5C3	coord: 1..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G003480.1	Lsi10G003480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane