Lsi10G002590 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi10G002590
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAnaphase-promoting complex subunit 13
Locationchr10: 4198892 .. 4202067 (+)
RNA-Seq ExpressionLsi10G002590
SyntenyLsi10G002590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGGAAAAAGGCTCCCCCATTAAACGATAATCATCACCATTCACTAGCCGTCGACAGTCCAAACTCCGTCTGTAGAGGTTATCTGCCAGCTGCTCCGACGGCAAGCGGCCCGCAGGAATCGTCTGCAGAGGCTAGAATCGTTAATTTTCCGACGGTTCGAAGGTATGATTCTCTCTCTTTCTTCCTTCTCCCTCACTCTCTGTTTTTCAGTTCTCTGTGTCTTCCTCTCTCCCATTCTGCCTCTCGTTCACTGTCTGCTTCTAACGACATCGGCCCGTTCCCGGTAAATTTCTTTGTTTGCGTCTGATTACTTTTTCTCTTTCGCAAATGGTTCTTTTATTCCAAGTCTTCAGATCTTAGACGTGCCGTAGCCCTTTCACTGTTCGCAGCGATAAATTATCACTGAGGTCTTCTATTTTGCTTAATAGATGTGTGAACTAATTGGATCTTGGTTTCACTATCTCGTTTCCTCTCTGATTAGTTCGCTTGAAATTAGAGTGCAAACTCTAAGAACGAATTTGCGTTTTCTATTACTTAATCAGCCTTTGTTCATGTTGAAATGCTGTCATATACACATCCCAGATGTTGTTCTTACCTGGCATTTCGCCCTCAAGTATTACATTTGAGTTCATTTATTGATTTACTTTGCATATATGATAGCTTTTCTATTTCTTTGTCTGAACTAATTTGTTGGCTATTGCATTTCTTTATCCAGAATTTCTTCTTCGTTAAGGATTTGGAGAACTGAATCCCCATTCTAGATTTGATATCCTCTCCTAGTGTACCTTAGATTGATATATGCGTTTTCTGTGTCATAGTTTTGGAGCCTTTGTTAATAACTTATCTATCTGAAATTTCAGATATTGGGTTTTAGAATCTCCCTTAACAAGAAAACACCAATGGCAGAACTTAGTCTGGGTATATTGATAGACATTCTAGATGAGGAATGGATGAGAGACACACTCCCTCATGATGGTAATTCTCAGCCTTCATTTCTATATAGTCAAGATATTAATTGTAACAAGCTGTGTCATTGCTTATTTAATGTAGTTGTTCTATCATTATCATAGATCTTCTACTCCCCCCCGTGCTGGTTGTTCGGACTGATGACACTGAGGACTCAAGTATGTCTCCTAACTTATAACTCAATGTTCAATCAACAACACATGGAAAGATGATTCATTTAGTTTTGATAACATATTCTAAAATGAAGCATGTTTTTGCACTCAATATTAAATTTAGTACATGGAGTTCCTAAGTCAAGAATCAATGAGTTTGTAATGCTATGGGAGAGTTTCCGTAACTTTAGAGAATGAAAAGTAAGATGCTTCAAAGTCACCGGATGGCTTGGCAGTATGGACTTGGGATGTGTTGGGAGGTACCTTCAAAATCTAGGATACAAATTTTTCGGTTGTTAAGTTAATAAATTAAAAACTTTCGTTGTCTCTTAGTGCTAGCTTTGAGGTGGATAAGACCTGTTTGGAGGGGTGGGCTTGAGCATAATGCAAGGTAGTATGGGCTACCTTTGTCCCACATCGGTGAGAATGGGATAGCCAATGTGGTACTTAAGTGGCTTGACTCTCCCACCTCAATAGTTGACTTTTGGTGTGTGGTTAGGAAGTACCTAACAATCTACTCCTACAAATTGTTATCGCTAGTGTTTTCAAAGCATACAATGTACATCTATGACAAGCTTGAGTGGCAACTGTGGTGCCACATGCAACGAGGCAGACGTTATGGTTGCCATTCAGTCATATTTGTAGCATCCTTGGGTGAACACTTTAAGATTTTTGACTGGAATGCAATCGTCGTATTTTTTAGGACGAGGCCACCGATTTTGATAAGTTCTTTGATCACATAACTTATATCGCTTTTTCATGGTGTAAATTTTACTCTCAATTTAGCTCTCATAGTCTCGCTTTCCTTATTGCCCATTGGAATTTTCTTATTTATTTATTTTTTTTTTTTTTTTTTTTGTAATTCCTTTGGCACATAGTTTGTCCTCTTTTATAGTTTATTCTTATCAATCAAATGAAGGAATTATCTGTTTCTCATTAGAAAAAAGAAAAAGAGAAAAAAAAAACACTTTGAAATTTCAGCCTGTAGTTTTTCCTCTTCTGACAGTAGTCGAGGATTTTTTTTTCTTCCTTCTATGAACGTATGTTTCTTCTTCAACAACAAGGAGAATTGCTTAGATGGTTTTAGGCTTGAGTTATAGTGTGTTTGGAATAACTTTGGAATGACATTGTTTTTTTTAAATAAAATTGATTTTCTATAAGCACATTCAAAAAGAAAAACAATAATTTAAAGAATGTCTAGCATAGCTTATTGAGTGATTTTAGAGGATCAAAATTGGTTTTAAAAAAATTCTTAATAAATAAGTAGTTCAAAAAAATTGAATTAATTTAAAACCTTTTCAAACACTTGAGAGATGGATAATCCAAAATGGTTTTTAAGTGATTAACTGAAAATCCTTTAAATATGTGTTAAGAAATAAAAACACATCTATAATTGATAAAATCGCTTTTGAATATTAGTCGTTTCCCTCTTTTTTTTTTGTTTTGCCAATTGTAGCAATTTGCTGGAGAATTCATTTTTGATCCCCTTCGCCTTTTAACCTCTTTGCAGATCAGGAGGCTCAGCCAGTTGATACTGATACTTGGCATGATCTTGCCCTAGGTAACCAATGAACCTTCTCCTAGCTAAGGATGGTCTGTTTTCAAGAGATTTGCTTCAAGTTAGAAATTTTATTATCATATTCTCTTGCTGTATTCGCATTGTAGATTTTCGGATTTCATTAATCCATGTTATAGATGTTAAATATTGATGTAGAAAGTGTTTGTTTGTGGTAAAAGAAATAATGTACATGTTGGTGGCAGTCGGTTAAATACTGTAGATGGATTTGTTGCTCTCTTTTGTAATTTCTTGTGTGGAGACAGATTGAAATGCTGTTTATTACTGTGAGAGATCTCTGTCCAATTCCATTTGGAAAAGACTTTAGGAGTTGCTTCTAAACGTAGTGGTGTTAAAAGGAGTACAAACTTCAATAAAAAAAATTTATAATTGTTCCTCTCCATGTCTTAAGAATTTGATTATGTATTCATTTTCTGCTCGGGAGTGATTCTAGAAATAGTGATTTTAACATAATTGATTTATTAATAAGTGACTTGTTAAAA

mRNA sequence

AGGGAAAAAGGCTCCCCCATTAAACGATAATCATCACCATTCACTAGCCGTCGACAGTCCAAACTCCGTCTGTAGAGGTTATCTGCCAGCTGCTCCGACGGCAAGCGGCCCGCAGGAATCGTCTGCAGAGGCTAGAATCGTTAATTTTCCGACGGTTCGAAGATATTGGGTTTTAGAATCTCCCTTAACAAGAAAACACCAATGGCAGAACTTAGTCTGGGTATATTGATAGACATTCTAGATGAGGAATGGATGAGAGACACACTCCCTCATGATGATCTTCTACTCCCCCCCGTGCTGGTTGTTCGGACTGATGACACTGAGGACTCAAATCAGGAGGCTCAGCCAGTTGATACTGATACTTGGCATGATCTTGCCCTAGGTAACCAATGAACCTTCTCCTAGCTAAGGATGGTCTGTTTTCAAGAGATTTGCTTCAAGTTAGAAATTTTATTATCATATTCTCTTGCTGTATTCGCATTGTAGATTTTCGGATTTCATTAATCCATGTTATAGATGTTAAATATTGATGTAGAAAGTGTTTGTTTGTGGTAAAAGAAATAATGTACATGTTGGTGGCAGTCGGTTAAATACTGTAGATGGATTTGTTGCTCTCTTTTGTAATTTCTTGTGTGGAGACAGATTGAAATGCTGTTTATTACTGTGAGAGATCTCTGTCCAATTCCATTTGGAAAAGACTTTAGGAGTTGCTTCTAAACGTAGTGGTGTTAAAAGGAGTACAAACTTCAATAAAAAAAATTTATAATTGTTCCTCTCCATGTCTTAAGAATTTGATTATGTATTCATTTTCTGCTCGGGAGTGATTCTAGAAATAGTGATTTTAACATAATTGATTTATTAATAAGTGACTTGTTAAAA

Coding sequence (CDS)

ATGGCAGAACTTAGTCTGGGTATATTGATAGACATTCTAGATGAGGAATGGATGAGAGACACACTCCCTCATGATGATCTTCTACTCCCCCCCGTGCTGGTTGTTCGGACTGATGACACTGAGGACTCAAATCAGGAGGCTCAGCCAGTTGATACTGATACTTGGCATGATCTTGCCCTAGGTAACCAATGA

Protein sequence

MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLALGNQ
Homology
[Close]
BLAST of Lsi10G002590 vs. ExPASy Swiss-Prot
Match: Q8L981 (Anaphase-promoting complex subunit 13 OS=Arabidopsis thaliana OX=3702 GN=APC13 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.5e-20
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 0 

Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
          MAE+SLG+LIDI+DEEWMRDTLP DDL LPPVL V+TDDTE++NQE Q  D +TW DLAL
Sbjct: 1  MAEVSLGMLIDIVDEEWMRDTLPDDDLPLPPVLAVKTDDTEETNQETQQADAETWRDLAL 60

Query: 61 GNQ 64
            Q
Sbjct: 61 DTQ 63

[Close]
BLAST of Lsi10G002590 vs. ExPASy TrEMBL
Match: A0A6J1JH61 (Anaphase-promoting complex subunit 13 OS=Cucurbita maxima OX=3661 GN=LOC111484329 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.8e-27
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
          MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVD DTWHDLAL
Sbjct: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDADTWHDLAL 60

Query: 61 GNQ 64
          GNQ
Sbjct: 61 GNQ 63

[Close]
BLAST of Lsi10G002590 vs. ExPASy TrEMBL
Match: A0A1S3CA59 (Anaphase-promoting complex subunit 13 OS=Cucumis melo OX=3656 GN=LOC103498390 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.5e-26
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 1   MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
           MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVR DDTEDSNQE+QPVDTDTWHDLAL
Sbjct: 96  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQESQPVDTDTWHDLAL 155

Query: 61  GNQ 64
           GNQ
Sbjct: 156 GNQ 158

[Close]
BLAST of Lsi10G002590 vs. ExPASy TrEMBL
Match: A0A0A0LNL0 (Anaphase-promoting complex subunit 13 OS=Cucumis sativus OX=3659 GN=Csa_2G437080 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.0e-26
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 1   MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
           MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVR DDTEDSNQE QPVDTDTWHDLAL
Sbjct: 159 MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLAL 218

Query: 61  GNQ 64
           GNQ
Sbjct: 219 GNQ 221

[Close]
BLAST of Lsi10G002590 vs. ExPASy TrEMBL
Match: A0A6J1FXS6 (Anaphase-promoting complex subunit 13 OS=Cucurbita moschata OX=3662 GN=LOC111448186 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.6e-26
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
          MAELSLGILIDILDEEWMRDTL HDDLLLPPVLVVRTDDTEDSNQEAQPVD DTWHDLAL
Sbjct: 1  MAELSLGILIDILDEEWMRDTLRHDDLLLPPVLVVRTDDTEDSNQEAQPVDADTWHDLAL 60

Query: 61 GNQ 64
          GNQ
Sbjct: 61 GNQ 63

[Close]
BLAST of Lsi10G002590 vs. ExPASy TrEMBL
Match: A0A6J1D5E8 (Anaphase-promoting complex subunit 13 OS=Momordica charantia OX=3673 GN=LOC111017200 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-25
Identity = 59/63 (93.65%), Postives = 60/63 (95.24%), Query Frame = 0 

Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
          MAELSLGILID+LDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVD D WHDLAL
Sbjct: 1  MAELSLGILIDVLDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDADAWHDLAL 60

Query: 61 GNQ 64
           NQ
Sbjct: 61 ANQ 63

[Close]
BLAST of Lsi10G002590 vs. NCBI nr
Match: XP_022986653.1 (anaphase-promoting complex subunit 13 [Cucurbita maxima] >XP_023512104.1 anaphase-promoting complex subunit 13 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.0 bits (323), Expect = 1.4e-26
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
          MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVD DTWHDLAL
Sbjct: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDADTWHDLAL 60

Query: 61 GNQ 64
          GNQ
Sbjct: 61 GNQ 63

[Close]
BLAST of Lsi10G002590 vs. NCBI nr
Match: XP_038900774.1 (anaphase-promoting complex subunit 13 isoform X4 [Benincasa hispida])

HSP 1 Score: 128.6 bits (322), Expect = 1.8e-26
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
          MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVR DDTEDSNQEAQPVDTDTWHDLAL
Sbjct: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRPDDTEDSNQEAQPVDTDTWHDLAL 60

Query: 61 GNQ 64
          GNQ
Sbjct: 61 GNQ 63

[Close]
BLAST of Lsi10G002590 vs. NCBI nr
Match: XP_008459198.1 (PREDICTED: uncharacterized protein LOC103498390 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 3.1e-26
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 1   MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
           MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVR DDTEDSNQE+QPVDTDTWHDLAL
Sbjct: 96  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQESQPVDTDTWHDLAL 155

Query: 61  GNQ 64
           GNQ
Sbjct: 156 GNQ 158

[Close]
BLAST of Lsi10G002590 vs. NCBI nr
Match: KGN63398.1 (hypothetical protein Csa_022587 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 4.1e-26
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 1   MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
           MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVR DDTEDSNQE QPVDTDTWHDLAL
Sbjct: 159 MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLAL 218

Query: 61  GNQ 64
           GNQ
Sbjct: 219 GNQ 221

[Close]
BLAST of Lsi10G002590 vs. NCBI nr
Match: XP_004148091.1 (anaphase-promoting complex subunit 13 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 4.1e-26
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
          MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVR DDTEDSNQE QPVDTDTWHDLAL
Sbjct: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDSNQETQPVDTDTWHDLAL 60

Query: 61 GNQ 64
          GNQ
Sbjct: 61 GNQ 63

[Close]
BLAST of Lsi10G002590 vs. TAIR 10
Match: AT1G73177.1 (bonsai )

HSP 1 Score: 98.2 bits (243), Expect = 2.5e-21
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 0 

Query: 1  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSNQEAQPVDTDTWHDLAL 60
          MAE+SLG+LIDI+DEEWMRDTLP DDL LPPVL V+TDDTE++NQE Q  D +TW DLAL
Sbjct: 1  MAEVSLGMLIDIVDEEWMRDTLPDDDLPLPPVLAVKTDDTEETNQETQQADAETWRDLAL 60

Query: 61 GNQ 64
            Q
Sbjct: 61 DTQ 63

The following BLAST results are available for this feature:
BLAST of Lsi10G002590 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8L9813.5e-2073.02Anaphase-promoting complex subunit 13 OS=Arabidopsis thaliana OX=3702 GN=APC13 P... [more]
BLAST of Lsi10G002590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JH616.8e-2798.41Anaphase-promoting complex subunit 13 OS=Cucurbita maxima OX=3661 GN=LOC11148432... [more]
A0A1S3CA591.5e-2696.83Anaphase-promoting complex subunit 13 OS=Cucumis melo OX=3656 GN=LOC103498390 PE... [more]
A0A0A0LNL02.0e-2696.83Anaphase-promoting complex subunit 13 OS=Cucumis sativus OX=3659 GN=Csa_2G437080... [more]
A0A6J1FXS67.6e-2696.83Anaphase-promoting complex subunit 13 OS=Cucurbita moschata OX=3662 GN=LOC111448... [more]
A0A6J1D5E81.7e-2593.65Anaphase-promoting complex subunit 13 OS=Momordica charantia OX=3673 GN=LOC11101... [more]
BLAST of Lsi10G002590 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022986653.11.4e-2698.41anaphase-promoting complex subunit 13 [Cucurbita maxima] >XP_023512104.1 anaphas... [more]
XP_038900774.11.8e-2698.41anaphase-promoting complex subunit 13 isoform X4 [Benincasa hispida][more]
XP_008459198.13.1e-2696.83PREDICTED: uncharacterized protein LOC103498390 [Cucumis melo][more]
KGN63398.14.1e-2696.83hypothetical protein Csa_022587 [Cucumis sativus][more]
XP_004148091.14.1e-2696.83anaphase-promoting complex subunit 13 [Cucumis sativus][more]
BLAST of Lsi10G002590 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G73177.12.5e-2173.02bonsai [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..63
IPR008401Apc13PANTHERPTHR28672ANAPHASE-PROMOTING COMPLEX SUBUNIT 13coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G002590.1Lsi10G002590.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007049 cell cycle
biological_process GO:0051301 cell division
biological_process GO:0070979 protein K11-linked ubiquitination
cellular_component GO:0005680 anaphase-promoting complex
molecular_function GO:0004386 helicase activity