Lsi10G002580 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G002580
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	binding partner of ACD11 1-like
Location	chr10: 4191090 .. 4193521 (-)
RNA-Seq Expression	Lsi10G002580
Synteny	Lsi10G002580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCATTTCGCCATGTGTATTACTACGAACCTAAACAACCGCCAAGCCACAACACCATACAACTCTCAAGGCCATTCTTCCTTCTTCCTCTCCCCTCTCTCTCTAAGAACTTGGATTGGGAAATCTCTCAAGTGGATCGGACAGAAGCATCATGGCGGTAGGTGTTTAATTTTTGTTTATTTTTCTGTTCATTATCTTCACAATCTGTTTAATTTCTTGCGATGTTATTACCCTCAATTTTCATTTTGATCTGAGGCCTGATTTCTACTTGCGATCAATATCAATTACTTAGGATTCAAGAAACAATCAGTATGTTTCACTTTTTTTCCCGTAATTTCTTATGGACTTATGCGTGAATTCGTATTGAGGAGATGGAGATTGCGTACTTCCGGTGTCATAATGGCACAAGACTGGAAACTAAAGTTTCAAACGATAAACAAGGAAGTTATGGAAGCACTGAAACCGAAACTGTCGAAATTCGGCTTTGATTTTACGGAAACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTAATCGTTACAGTTTCTTTGTTTTGTTTATTGCAGACGAGAACGGTGAGAGTTACTAATGTCTCCTTAAGCGCGACAGAGAAAGATTTGAGAGACTTTTTTTCTTTTTCCGGTGAAATTGAATATGTCGAAATGCGAAAGTAAGTATGATTCAGTAATGTATTTAAATTTTATTTTGGCTGTTTGTTAAGATCGATGGGGAATTACATTTTTTCCTTCTTCATTTTGTTCACGAACTGTTTGTTCATAGGCATTTTCATTTTCTTTATGATGTGTTCTAGGGACAATGAGCGATCTCAAGTTGTATTTGTTACCTTTAAGGATCCGAAAGGGGCAGAGACATCGATTCTACTCTCGGTTGATACAATTCTCTATCTTCTCTTTCTTTATTTCTATTGTCCTTCTGAATGATTTTATTCAATTATATGCTTTTTTATTTGAACTTTCATTTGAAAGTAGAAAATTTCTTCTGTTATGATATATGAAAAGTGGCTCTAAGGGATGCTACGTTTTGAAAATTACTTAGAACAGAATTTTATTCTTCAGAAAAGAGGAGATTTGACAAGCTTTCGTCCATTTATTTCTTTAAGATAAGATGGGAGAAACTATTCAATATAGTCACCATGATGTGTTTAGTCATTTTTATATATAACTGTAGATTCATAGTTATTGTTTTTTGTAGTTTCATTCTCATGCATCTAATAATGGAAAATTTCTTTATTAGAATCTCTCTTTGTAAAATTTCTTTGCTACCTCAACTGCCCGAGAAAAACAAGTGAAAGATGCATCTTCCATTCATACCGATTTTGGTTTTTCTACGCCATATTTACATCTGCCTCGTCTTCTATCTGGAGAGATTGTGTTGCAATGTTGACTTCTCTTAGAAGAAATTTGTGATAGAGGCTTTTTTCTTGTTTCATCTGTTATCTTACCTAATTAAACTGTCTTGCTTCTCTCAGGGAGCTACAATTGTTGATCAGCCTGTAACCATTGCTTCTGCTCCAGATTACAACCTTCCTGCTGTTGTTGCCAGTGACCCTGTAGCTGTACCAGTGTCTACTCCAGTATTTTCAATCTTTCCCTTTACAATATATTTTCAATCTTTCTAATGAAATTTCTAACATGAATGAATAATCCTGTTTCACCAGGCTACAGACAACACGACCTCTGGTACTTCTGGTGGATCTGCAATACAAAAGGCAGAGGATGTTGTCAGCAGCATGCTGGCCAAAGGCTTCACTTTGGGCAAAGATGCCCTTAATAAGGCAAAGTCTTTTGATGAGAGGCACCAATTGACTTCGACAGCCTCATCCAAAGTCGCTTCTCTTGACCAAAAGATCGGCCTTAGCGAGAAAATTAGTGTTGGCACAACGGTGGTGAATGAGAAAGTGAGGGAAATGGATGAGAAATTTCAAGTGTCTGAGAAAACCAAGGCAGCTGTGAGCACTGCAGGATCAGCCATAATGACTAACCGCTACGTCTTAACCGGGGCTTCCTGGGTTACCCAGACATTTCAAAGAGTTGCGAAAGCTGCTGTAGATGTTAGCCAGAAAACGAAGGAGAAGGTTTTAGCTGAGGATCAAGGTAAACATGTGGGAAATTCTTCTTAAGTCATCCAAGAATTGCTGCGCTCTAAATATATAAAATCATATATGTTTGGCCAAAACAATTTGAGGTACCAATTCTTAGCTTGTTATTTTCATCTGAGTTTGATATATTTTTAATGCTTTATTTTAGTTTTAGTATTAGGGAGTACACATATAAGCTACATTACATGCTTATGTTGTAATTCAACAGTAAGAAAAGCATATATGCTATGTGATAAAGTATCCAGAGCTCTTCTTTGTTTCTATTATAGATGGAATATCCCTTTTCCTTTTTA

mRNA sequence

CTTCATTTCGCCATGTGTATTACTACGAACCTAAACAACCGCCAAGCCACAACACCATACAACTCTCAAGGCCATTCTTCCTTCTTCCTCTCCCCTCTCTCTCTAAGAACTTGGATTGGGAAATCTCTCAAGTGGATCGGACAGAAGCATCATGGCGACGAGAACGGTGAGAGTTACTAATGTCTCCTTAAGCGCGACAGAGAAAGATTTGAGAGACTTTTTTTCTTTTTCCGGTGAAATTGAATATGTCGAAATGCGAAAGGACAATGAGCGATCTCAAGTTGTATTTGTTACCTTTAAGGATCCGAAAGGGGCAGAGACATCGATTCTACTCTCGGGAGCTACAATTGTTGATCAGCCTGTAACCATTGCTTCTGCTCCAGATTACAACCTTCCTGCTGTTGTTGCCAGTGACCCTGTAGCTGTACCAGTGTCTACTCCAGCTACAGACAACACGACCTCTGGTACTTCTGGTGGATCTGCAATACAAAAGGCAGAGGATGTTGTCAGCAGCATGCTGGCCAAAGGCTTCACTTTGGGCAAAGATGCCCTTAATAAGGCAAAGTCTTTTGATGAGAGGCACCAATTGACTTCGACAGCCTCATCCAAAGTCGCTTCTCTTGACCAAAAGATCGGCCTTAGCGAGAAAATTAGTGTTGGCACAACGGTGGTGAATGAGAAAGTGAGGGAAATGGATGAGAAATTTCAAGTGTCTGAGAAAACCAAGGCAGCTGTGAGCACTGCAGGATCAGCCATAATGACTAACCGCTACGTCTTAACCGGGGCTTCCTGGGTTACCCAGACATTTCAAAGAGTTGCGAAAGCTGCTGTAGATGTTAGCCAGAAAACGAAGGAGAAGGTTTTAGCTGAGGATCAAGGTAAACATGTGGGAAATTCTTCTTAAGTCATCCAAGAATTGCTGCGCTCTAAATATATAAAATCATATATGTTTGGCCAAAACAATTTGAGGTACCAATTCTTAGCTTGTTATTTTCATCTGAGTTTGATATATTTTTAATGCTTTATTTTAGTTTTAGTATTAGGGAGTACACATATAAGCTACATTACATGCTTATGTTGTAATTCAACAGTAAGAAAAGCATATATGCTATGTGATAAAGTATCCAGAGCTCTTCTTTGTTTCTATTATAGATGGAATATCCCTTTTCCTTTTTA

Coding sequence (CDS)

ATGGCGACGAGAACGGTGAGAGTTACTAATGTCTCCTTAAGCGCGACAGAGAAAGATTTGAGAGACTTTTTTTCTTTTTCCGGTGAAATTGAATATGTCGAAATGCGAAAGGACAATGAGCGATCTCAAGTTGTATTTGTTACCTTTAAGGATCCGAAAGGGGCAGAGACATCGATTCTACTCTCGGGAGCTACAATTGTTGATCAGCCTGTAACCATTGCTTCTGCTCCAGATTACAACCTTCCTGCTGTTGTTGCCAGTGACCCTGTAGCTGTACCAGTGTCTACTCCAGCTACAGACAACACGACCTCTGGTACTTCTGGTGGATCTGCAATACAAAAGGCAGAGGATGTTGTCAGCAGCATGCTGGCCAAAGGCTTCACTTTGGGCAAAGATGCCCTTAATAAGGCAAAGTCTTTTGATGAGAGGCACCAATTGACTTCGACAGCCTCATCCAAAGTCGCTTCTCTTGACCAAAAGATCGGCCTTAGCGAGAAAATTAGTGTTGGCACAACGGTGGTGAATGAGAAAGTGAGGGAAATGGATGAGAAATTTCAAGTGTCTGAGAAAACCAAGGCAGCTGTGAGCACTGCAGGATCAGCCATAATGACTAACCGCTACGTCTTAACCGGGGCTTCCTGGGTTACCCAGACATTTCAAAGAGTTGCGAAAGCTGCTGTAGATGTTAGCCAGAAAACGAAGGAGAAGGTTTTAGCTGAGGATCAAGGTAAACATGTGGGAAATTCTTCTTAA

Protein sequence

MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTTSGTSGGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLAEDQGKHVGNSS

Homology

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BLAST of Lsi10G002580 vs. ExPASy Swiss-Prot
Match: Q9LFD5 (Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.1e-59
Identity = 135/244 (55.33%), Postives = 178/244 (72.95%), Query Frame = 0


Query: 4   RTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSG 63
           R+V+V N+S  ATE D+++FFSFSGE+E +++ + NE S   +VTFK+ +GAET++LLSG
Sbjct: 6   RSVKVGNLSSGATEHDIKEFFSFSGEVESIDI-QSNEHS--AYVTFKETQGAETAVLLSG 65

Query: 64  ATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTTSGTSGGSAIQKAEDVVSSML 123
           A+I DQ V I  AP+Y+ PA             P  +  +SG    S +QKAEDVVSSML
Sbjct: 66  ASIADQSVIIELAPNYSPPA------------APHAETQSSGAE--SVVQKAEDVVSSML 125

Query: 124 AKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDE 183
           AKGF LGKDA+ KAK+FDE+H  TSTA++ VASLDQKIGLS+K++ GT++VNEK++ +D+
Sbjct: 126 AKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQ 185

Query: 184 KFQVSEKTKA-------AVSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEK 241
            FQV+E+TK+        VS+AGSA+M NRYVLTG SW    F RVA+AA +V QKTKEK
Sbjct: 186 NFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEK 232

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BLAST of Lsi10G002580 vs. ExPASy Swiss-Prot
Match: P87216 (Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vip1 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-08
Identity = 58/201 (28.86%), Postives = 89/201 (44.28%), Query Frame = 0


Query: 6   VRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGAT 65
           V VTN+S   TEK + DFFSF G++  +   K  E +Q   + F+ P   +T++LL  A 
Sbjct: 5   VIVTNISPEVTEKQISDFFSFCGKVSNISTEKSGE-TQTAKIQFERPSATKTALLLQDAL 64

Query: 66  IVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTTSGTSGGSAIQKAED-----VVS 125
           +    + I S                      A   T  G +GG    + ED     ++S
Sbjct: 65  LGQNKIQITSE------------------DGGAASTTDQGGAGGDQAARQEDKPRSAIIS 124

Query: 126 SMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTV-VNEKVR 185
            +L++G+ L    L K+   D+ + ++S     + S      LS   SV     V EK  
Sbjct: 125 ELLSRGYHLSDVTLEKSIQLDQSYGVSSKFKGILES-----ALSGVRSVNERYHVTEKAN 181

Query: 186 EMDEKFQVSEK---TKAAVST 198
           E+D KF +S+K   T + VST
Sbjct: 185 EVDNKFAISDKLNRTSSLVST 181

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BLAST of Lsi10G002580 vs. ExPASy TrEMBL
Match: A0A5A7TN24 (Binding partner of ACD11 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00080 PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 5.0e-113
Identity = 233/252 (92.46%), Postives = 240/252 (95.24%), Query Frame = 0


Query: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSIL 60
           MATRTVRVTNVSLSATEKDLRDFFSFSGEIE+VEMR DNERSQ+ FVTFKDPKGAETSIL
Sbjct: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDPKGAETSIL 60

Query: 61  LSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTTS-GTSGGSAIQKAEDVV 120
           LSGATIVDQPV+I+SAPDYNLPAV AS PVAVPVSTPA DNTTS  T+ GSAIQK EDVV
Sbjct: 61  LSGATIVDQPVSISSAPDYNLPAVDASAPVAVPVSTPAIDNTTSTTTTAGSAIQKTEDVV 120

Query: 121 SSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVR 180
           SSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVR
Sbjct: 121 SSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVR 180

Query: 181 EMDEKFQVSEKTKAAVSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLA 240
           EMDEKFQVSEKTKAAVS AGSA+M NRYVLTGASWV+QTFQRVAKAAVDVSQKTKEKVLA
Sbjct: 181 EMDEKFQVSEKTKAAVSNAGSALMANRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVLA 240

Query: 241 -EDQGKHVGNSS 251
            EDQGKHVGNSS
Sbjct: 241 EEDQGKHVGNSS 252

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BLAST of Lsi10G002580 vs. ExPASy TrEMBL
Match: A0A0A0LRG1 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G437070 PE=4 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 6.5e-113
Identity = 234/253 (92.49%), Postives = 241/253 (95.26%), Query Frame = 0


Query: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSIL 60
           MATRTVRVTNVSLSATEKDLRDFFSFSGEIE+VEMR DNERSQ+ FVTFKD KGAETSIL
Sbjct: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSIL 60

Query: 61  LSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTTSGT--SGGSAIQKAEDV 120
           LSGATIVDQPV+I+SAPDYNLPAV AS PVAVPVSTPA DNTTS T  + GSA+QKAEDV
Sbjct: 61  LSGATIVDQPVSISSAPDYNLPAVDASAPVAVPVSTPALDNTTSTTNSTAGSAMQKAEDV 120

Query: 121 VSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKV 180
           VSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKV
Sbjct: 121 VSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKV 180

Query: 181 REMDEKFQVSEKTKAAVSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVL 240
           REMDEKFQVSEKTKAAVS AGSAIMTNRYVLTGASWV+QTFQRVAKAAVDVSQKTKEKVL
Sbjct: 181 REMDEKFQVSEKTKAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVL 240

Query: 241 A-EDQGKHVGNSS 251
           A EDQGKHVGNSS
Sbjct: 241 AEEDQGKHVGNSS 253

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BLAST of Lsi10G002580 vs. ExPASy TrEMBL
Match: A0A6J1JGG3 (binding partner of ACD11 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484286 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 4.4e-101
Identity = 215/254 (84.65%), Postives = 229/254 (90.16%), Query Frame = 0


Query: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSIL 60
           MA RTVRVTNVSL ATEK+LR+FFSFSGEIE+VEMRKDNE+ QV FVTFKDPKGAETSIL
Sbjct: 1   MAMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 60

Query: 61  LSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNT------TSGTSG--GSAI 120
           LSGATIVDQP++I SAPDYNLPAV ASDP A   S PA +NT      T+GT+G  GSA+
Sbjct: 61  LSGATIVDQPISIVSAPDYNLPAVAASDPPA--ASAPAAENTGAETAETAGTTGTTGSAM 120

Query: 121 QKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTT 180
           QKAEDVVSSMLAKGF LGKDALN+AKSFDERHQLT TASSKVASLDQKIGLSEKISVGTT
Sbjct: 121 QKAEDVVSSMLAKGFILGKDALNRAKSFDERHQLTWTASSKVASLDQKIGLSEKISVGTT 180

Query: 181 VVNEKVREMDEKFQVSEKTKAAVSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQK 240
           VVNEKVREMDEKFQVSEKTKAAV+ AGSAIMTNRYV TGASWV+QTFQRVAKAAVDVSQK
Sbjct: 181 VVNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQK 240

Query: 241 TKEKVLAED-QGKH 246
           TKEK+LAED QGKH
Sbjct: 241 TKEKMLAEDQQGKH 252

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BLAST of Lsi10G002580 vs. ExPASy TrEMBL
Match: A0A6J1FT10 (binding partner of ACD11 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448198 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 5.7e-101
Identity = 215/257 (83.66%), Postives = 230/257 (89.49%), Query Frame = 0


Query: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSIL 60
           MA RTVRVTNVSL ATEK+LR+FFSFSGEIE+VEMRKDNE+ QV FVTFKDPKGAETSIL
Sbjct: 1   MAMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 60

Query: 61  LSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNT---------TSGTSG--G 120
           LSGATIVDQP++I SAPDYNLPAV ASDP A   S PAT+NT         T+GT+G  G
Sbjct: 61  LSGATIVDQPISIVSAPDYNLPAVAASDPPA--ASAPATENTGAETAGTTGTTGTTGTTG 120

Query: 121 SAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISV 180
           SA+QKAEDVVSSMLAKGF LGKDALN+AKSFDERH+LTSTAS KVASLDQKIGLSEKISV
Sbjct: 121 SAMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISV 180

Query: 181 GTTVVNEKVREMDEKFQVSEKTKAAVSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDV 240
           GTTVVNEKVREMDEKFQVSEKTKAAV+ AGSAIMTNRYV TGASWV+QTFQRVAKAAVDV
Sbjct: 181 GTTVVNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDV 240

Query: 241 SQKTKEKVLAED-QGKH 246
           SQKTKEK+LAED QGKH
Sbjct: 241 SQKTKEKMLAEDQQGKH 255

[Close]

BLAST of Lsi10G002580 vs. ExPASy TrEMBL
Match: A0A1S4E2B3 (binding partner of ACD11 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498392 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.3e-100
Identity = 210/229 (91.70%), Postives = 217/229 (94.76%), Query Frame = 0


Query: 24  FSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPA 83
           FSFSGEIE+VEMR DNERSQ+ FVTFKDPKGAETSILLSGATIVDQPV+I+SAPDYNLPA
Sbjct: 62  FSFSGEIEFVEMRNDNERSQLAFVTFKDPKGAETSILLSGATIVDQPVSISSAPDYNLPA 121

Query: 84  VVASDPVAVPVSTPATDNTTS-GTSGGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDE 143
           V AS PVAVPVSTPA DNTTS  T+ GSAIQK EDVVSSMLAKGFTLGKDALNKAKSFDE
Sbjct: 122 VDASAPVAVPVSTPAIDNTTSTTTTAGSAIQKTEDVVSSMLAKGFTLGKDALNKAKSFDE 181

Query: 144 RHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVSTAGSAI 203
           RHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVS AGSA+
Sbjct: 182 RHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVSNAGSAL 241

Query: 204 MTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLA-EDQGKHVGNSS 251
           M NRYVLTGASWV+QTFQRVAKAAVDVSQKTKEKVLA EDQGKHVGNSS
Sbjct: 242 MANRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVLAEEDQGKHVGNSS 290

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BLAST of Lsi10G002580 vs. NCBI nr
Match: XP_038900617.1 (binding partner of ACD11 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 423.7 bits (1088), Expect = 1.1e-114
Identity = 234/251 (93.23%), Postives = 240/251 (95.62%), Query Frame = 0


Query: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSIL 60
           MA RTVRVTNVSLS TEKDLRDFFSFSGEIE+VEMRKD ERSQ+ FVTFKDPKGAETSIL
Sbjct: 1   MAMRTVRVTNVSLSVTEKDLRDFFSFSGEIEFVEMRKDTERSQLAFVTFKDPKGAETSIL 60

Query: 61  LSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTTSGTS-GGSAIQKAEDVV 120
           LSGATIVDQPV+IASAPDYNLPAV AS PVA+PVSTPATDNT SGTS  GSA+QKAEDVV
Sbjct: 61  LSGATIVDQPVSIASAPDYNLPAVNASAPVAMPVSTPATDNTNSGTSTAGSAMQKAEDVV 120

Query: 121 SSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVR 180
           SSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVR
Sbjct: 121 SSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVR 180

Query: 181 EMDEKFQVSEKTKAAVSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLA 240
           EMDEKFQVSEKTKAAVS AGSAIMTNRYVLTGASWV+QTFQRVAKAAVDVSQKTKEKVL 
Sbjct: 181 EMDEKFQVSEKTKAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVLV 240

Query: 241 EDQGKHVGNSS 251
           EDQGKHVGNSS
Sbjct: 241 EDQGKHVGNSS 251

[Close]

BLAST of Lsi10G002580 vs. NCBI nr
Match: XP_038900618.1 (binding partner of ACD11 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 421.0 bits (1081), Expect = 7.1e-114
Identity = 232/248 (93.55%), Postives = 238/248 (95.97%), Query Frame = 0


Query: 4   RTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSG 63
           RTVRVTNVSLS TEKDLRDFFSFSGEIE+VEMRKD ERSQ+ FVTFKDPKGAETSILLSG
Sbjct: 2   RTVRVTNVSLSVTEKDLRDFFSFSGEIEFVEMRKDTERSQLAFVTFKDPKGAETSILLSG 61

Query: 64  ATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTTSGTS-GGSAIQKAEDVVSSM 123
           ATIVDQPV+IASAPDYNLPAV AS PVA+PVSTPATDNT SGTS  GSA+QKAEDVVSSM
Sbjct: 62  ATIVDQPVSIASAPDYNLPAVNASAPVAMPVSTPATDNTNSGTSTAGSAMQKAEDVVSSM 121

Query: 124 LAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMD 183
           LAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMD
Sbjct: 122 LAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMD 181

Query: 184 EKFQVSEKTKAAVSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLAEDQ 243
           EKFQVSEKTKAAVS AGSAIMTNRYVLTGASWV+QTFQRVAKAAVDVSQKTKEKVL EDQ
Sbjct: 182 EKFQVSEKTKAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVLVEDQ 241

Query: 244 GKHVGNSS 251
           GKHVGNSS
Sbjct: 242 GKHVGNSS 249

[Close]

BLAST of Lsi10G002580 vs. NCBI nr
Match: KAA0042981.1 (binding partner of ACD11 1-like isoform X1 [Cucumis melo var. makuwa] >TYK11107.1 binding partner of ACD11 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 417.2 bits (1071), Expect = 1.0e-112
Identity = 233/252 (92.46%), Postives = 240/252 (95.24%), Query Frame = 0


Query: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSIL 60
           MATRTVRVTNVSLSATEKDLRDFFSFSGEIE+VEMR DNERSQ+ FVTFKDPKGAETSIL
Sbjct: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDPKGAETSIL 60

Query: 61  LSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTTS-GTSGGSAIQKAEDVV 120
           LSGATIVDQPV+I+SAPDYNLPAV AS PVAVPVSTPA DNTTS  T+ GSAIQK EDVV
Sbjct: 61  LSGATIVDQPVSISSAPDYNLPAVDASAPVAVPVSTPAIDNTTSTTTTAGSAIQKTEDVV 120

Query: 121 SSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVR 180
           SSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVR
Sbjct: 121 SSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVR 180

Query: 181 EMDEKFQVSEKTKAAVSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLA 240
           EMDEKFQVSEKTKAAVS AGSA+M NRYVLTGASWV+QTFQRVAKAAVDVSQKTKEKVLA
Sbjct: 181 EMDEKFQVSEKTKAAVSNAGSALMANRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVLA 240

Query: 241 -EDQGKHVGNSS 251
            EDQGKHVGNSS
Sbjct: 241 EEDQGKHVGNSS 252

[Close]

BLAST of Lsi10G002580 vs. NCBI nr
Match: XP_004148092.1 (binding partner of ACD11 1 [Cucumis sativus] >KGN63397.1 hypothetical protein Csa_022121 [Cucumis sativus])

HSP 1 Score: 416.8 bits (1070), Expect = 1.3e-112
Identity = 234/253 (92.49%), Postives = 241/253 (95.26%), Query Frame = 0


Query: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSIL 60
           MATRTVRVTNVSLSATEKDLRDFFSFSGEIE+VEMR DNERSQ+ FVTFKD KGAETSIL
Sbjct: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSIL 60

Query: 61  LSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTTSGT--SGGSAIQKAEDV 120
           LSGATIVDQPV+I+SAPDYNLPAV AS PVAVPVSTPA DNTTS T  + GSA+QKAEDV
Sbjct: 61  LSGATIVDQPVSISSAPDYNLPAVDASAPVAVPVSTPALDNTTSTTNSTAGSAMQKAEDV 120

Query: 121 VSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKV 180
           VSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKV
Sbjct: 121 VSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKV 180

Query: 181 REMDEKFQVSEKTKAAVSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVL 240
           REMDEKFQVSEKTKAAVS AGSAIMTNRYVLTGASWV+QTFQRVAKAAVDVSQKTKEKVL
Sbjct: 181 REMDEKFQVSEKTKAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKEKVL 240

Query: 241 A-EDQGKHVGNSS 251
           A EDQGKHVGNSS
Sbjct: 241 AEEDQGKHVGNSS 253

[Close]

BLAST of Lsi10G002580 vs. NCBI nr
Match: XP_023512142.1 (binding partner of ACD11 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 383.3 bits (983), Expect = 1.6e-102
Identity = 217/251 (86.45%), Postives = 231/251 (92.03%), Query Frame = 0


Query: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSIL 60
           MA RTVRVTNVSL ATEK+LR+FFSFSGEIE+VEMRKDNE+ QV FVTFKDPKGAETSIL
Sbjct: 1   MAMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 60

Query: 61  LSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNT---TSGTSG--GSAIQKA 120
           LSGATIVDQP++I SAPDYNLPAV ASDP A   S PAT+NT   T+GT+G  GSA+QKA
Sbjct: 61  LSGATIVDQPISIVSAPDYNLPAVAASDPPA--ASAPATENTGAETAGTTGTTGSAMQKA 120

Query: 121 EDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVN 180
           EDVVSSMLAKGF LGKDALN+AKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVN
Sbjct: 121 EDVVSSMLAKGFILGKDALNRAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVN 180

Query: 181 EKVREMDEKFQVSEKTKAAVSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKE 240
           EKVREMDEKFQVSEKTKAAV+ AGSAIMTNRYV TGASWV+QTFQRVAKAAVDVSQKTKE
Sbjct: 181 EKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKTKE 240

Query: 241 KVLAED-QGKH 246
           K+LAED QGKH
Sbjct: 241 KMLAEDQQGKH 249

[Close]

BLAST of Lsi10G002580 vs. TAIR 10
Match: AT4G17720.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 261.5 bits (667), Expect = 6.7e-70
Identity = 151/252 (59.92%), Postives = 192/252 (76.19%), Query Frame = 0


Query: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSIL 60
           M   TV+V+NVSL AT++DL++FFSFSG+I Y+E + + ER+++ +VTFKD +GAET++L
Sbjct: 1   MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVL 60

Query: 61  LSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTTSGTSGGSAIQKAEDVVS 120
           LSGATIVD  V ++ APDY L       P A+  S    D+  S  +G S ++KAEDVVS
Sbjct: 61  LSGATIVDSSVIVSMAPDYQL------SPEAL-ASLEPKDSNKSPKAGDSVLRKAEDVVS 120

Query: 121 SMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVRE 180
           SMLAKGF LGKDA+ KAKS DE+HQLTSTAS+KVAS D+KIG ++KI+ GT VV EKVRE
Sbjct: 121 SMLAKGFILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKVRE 180

Query: 181 MDEKFQVSEKTKAA-------VSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKT 240
           +D+K+QVSEKTK+A       VS AGSAIM NRYVLTGA+WVT  F +VAKAA +V QK 
Sbjct: 181 VDQKYQVSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKA 240

Query: 241 KEKV-LAEDQGK 245
           KEKV +AE++ K
Sbjct: 241 KEKVGMAEEEDK 245

[Close]

BLAST of Lsi10G002580 vs. TAIR 10
Match: AT5G46870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 253.4 bits (646), Expect = 1.8e-67
Identity = 145/251 (57.77%), Postives = 193/251 (76.89%), Query Frame = 0


Query: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSIL 60
           M+  TV+V+NVSL ATE+DL++FFSFSG+I Y+E + +N+ S++ +VTFKD +GAET++L
Sbjct: 1   MSMVTVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVL 60

Query: 61  LSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTTSGT-SGGSAIQKAEDVV 120
           L+G+TIVD  VT+  +PDY LP     D +A   S   ++ ++S T    S  +KAEDVV
Sbjct: 61  LTGSTIVDSSVTVTMSPDYQLP----PDALASIESLKESNKSSSPTREDVSVFRKAEDVV 120

Query: 121 SSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVR 180
           S M++KGF LGKDA+ KAKS DE+HQLTSTAS++V S D++IG +EKI+ GTTVV+EKV+
Sbjct: 121 SGMISKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEKVK 180

Query: 181 EMDEKFQVSEKTKAA-------VSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQK 240
           E+D+KFQV+EKTK+A       VS AGSAIM NRYVLTGA+WVT  F RV+KAA +V QK
Sbjct: 181 EVDQKFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEVGQK 240

Query: 241 TKEKV-LAEDQ 243
            KEKV LAE++
Sbjct: 241 AKEKVGLAEEE 247

[Close]

BLAST of Lsi10G002580 vs. TAIR 10
Match: AT5G16840.2 (binding partner of acd11 1 )

HSP 1 Score: 236.1 bits (601), Expect = 3.0e-62
Identity = 135/244 (55.33%), Postives = 178/244 (72.95%), Query Frame = 0


Query: 4   RTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSG 63
           R+V+V N+S  ATE D+++FFSFSGE+E ++++  NE S   +VTFK+ +GAET++LLSG
Sbjct: 6   RSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEHS--AYVTFKETQGAETAVLLSG 65

Query: 64  ATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTTSGTSGGSAIQKAEDVVSSML 123
           A+I DQ V I  AP+Y+ PA             P  +  +SG    S +QKAEDVVSSML
Sbjct: 66  ASIADQSVIIELAPNYSPPA------------APHAETQSSGAE--SVVQKAEDVVSSML 125

Query: 124 AKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDE 183
           AKGF LGKDA+ KAK+FDE+H  TSTA++ VASLDQKIGLS+K++ GT++VNEK++ +D+
Sbjct: 126 AKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQ 185

Query: 184 KFQVSEKTKA-------AVSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEK 241
            FQV+E+TK+        VS+AGSA+M NRYVLTG SW    F RVA+AA +V QKTKEK
Sbjct: 186 NFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEK 233

[Close]

BLAST of Lsi10G002580 vs. TAIR 10
Match: AT5G16840.3 (binding partner of acd11 1 )

HSP 1 Score: 234.6 bits (597), Expect = 8.8e-62
Identity = 137/247 (55.47%), Postives = 180/247 (72.87%), Query Frame = 0


Query: 1   MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSIL 60
           MA R+V+V N+S  ATE D+++FFSFSGE+E +++ + NE S   +VTFK+ +GAET++L
Sbjct: 1   MAVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDI-QSNEHS--AYVTFKETQGAETAVL 60

Query: 61  LSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTTSGTSGGSAIQKAEDVVS 120
           LSGA+I DQ V I  AP+Y+ PA             P  +  +SG    S +QKAEDVVS
Sbjct: 61  LSGASIADQSVIIELAPNYSPPA------------APHAETQSSGAE--SVVQKAEDVVS 120

Query: 121 SMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVRE 180
           SMLAKGF LGKDA+ KAK+FDE+H  TSTA++ VASLDQKIGLS+K++ GT++VNEK++ 
Sbjct: 121 SMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKA 180

Query: 181 MDEKFQVSEKTKA-------AVSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKT 240
           +D+ FQV+E+TK+        VS+AGSA+M NRYVLTG SW    F RVA+AA +V QKT
Sbjct: 181 VDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKT 230

[Close]

BLAST of Lsi10G002580 vs. TAIR 10
Match: AT5G16840.1 (binding partner of acd11 1 )

HSP 1 Score: 231.5 bits (589), Expect = 7.5e-61
Identity = 135/244 (55.33%), Postives = 178/244 (72.95%), Query Frame = 0


Query: 4   RTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSG 63
           R+V+V N+S  ATE D+++FFSFSGE+E +++ + NE S   +VTFK+ +GAET++LLSG
Sbjct: 6   RSVKVGNLSSGATEHDIKEFFSFSGEVESIDI-QSNEHS--AYVTFKETQGAETAVLLSG 65

Query: 64  ATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTTSGTSGGSAIQKAEDVVSSML 123
           A+I DQ V I  AP+Y+ PA             P  +  +SG    S +QKAEDVVSSML
Sbjct: 66  ASIADQSVIIELAPNYSPPA------------APHAETQSSGAE--SVVQKAEDVVSSML 125

Query: 124 AKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDE 183
           AKGF LGKDA+ KAK+FDE+H  TSTA++ VASLDQKIGLS+K++ GT++VNEK++ +D+
Sbjct: 126 AKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQ 185

Query: 184 KFQVSEKTKA-------AVSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEK 241
            FQV+E+TK+        VS+AGSA+M NRYVLTG SW    F RVA+AA +V QKTKEK
Sbjct: 186 NFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKEK 232

The following BLAST results are available for this feature:

BLAST of Lsi10G002580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LFD5	1.1e-59	55.33	Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1	[more]
P87216	1.4e-08	28.86	Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN...	[more]

BLAST of Lsi10G002580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TN24	5.0e-113	92.46	Binding partner of ACD11 1-like isoform X1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0LRG1	6.5e-113	92.49	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G437070 PE=4 SV...	[more]
A0A6J1JGG3	4.4e-101	84.65	binding partner of ACD11 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1FT10	5.7e-101	83.66	binding partner of ACD11 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A1S4E2B3	1.3e-100	91.70	binding partner of ACD11 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034983...	[more]

BLAST of Lsi10G002580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900617.1	1.1e-114	93.23	binding partner of ACD11 1-like isoform X1 [Benincasa hispida]	[more]
XP_038900618.1	7.1e-114	93.55	binding partner of ACD11 1-like isoform X2 [Benincasa hispida]	[more]
KAA0042981.1	1.0e-112	92.46	binding partner of ACD11 1-like isoform X1 [Cucumis melo var. makuwa] >TYK11107....	[more]
XP_004148092.1	1.3e-112	92.49	binding partner of ACD11 1 [Cucumis sativus] >KGN63397.1 hypothetical protein Cs...	[more]
XP_023512142.1	1.6e-102	86.45	binding partner of ACD11 1-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi10G002580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17720.1	6.7e-70	59.92	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46870.1	1.8e-67	57.77	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	3.0e-62	55.33	binding partner of acd11 1	[more]
AT5G16840.3	8.8e-62	55.47	binding partner of acd11 1	[more]
AT5G16840.1	7.5e-61	55.33	binding partner of acd11 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 5..74 e-value: 3.1E-10 score: 50.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 6..66 e-value: 8.0E-9 score: 35.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 4..78 score: 12.423892
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..82 e-value: 9.3E-13 score: 50.1
None	No IPR available	PANTHER	PTHR32343:SF37	BINDING PARTNER OF ACD11 1	coord: 1..244
None	No IPR available	PANTHER	PTHR32343	SERINE/ARGININE-RICH SPLICING FACTOR	coord: 1..244
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 4..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G002580.1	Lsi10G002580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding