Lsi10G002420 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi10G002420
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	cleavage and polyadenylation specificity factor subunit 3-II
Location	chr10: 3996041 .. 3996883 (-)
RNA-Seq Expression	Lsi10G002420
Synteny	Lsi10G002420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTTGTGAAATTCCTTAGTCCCAAGCATGTGATACTTGTACATGGAGAGAAACCTAAAATGGCTGCTTTAAAGGAGAGGATTCATTCTGAACTGGGAATCCCATGTCATGATCCTGCAAATAATGAAACCGTATCCATTTCTTCAACTCTTTCTGTCAAAGCAGAAGCCTCAAGCATGTTTATTCAGAGTTGTTCCACTCCTAATTTCAAGTTCTTGAAAAGAAACTTGAATGATAAGATTGATTCCAATTTAAAAGATTTAAGTTGCAAAGCAGAAGGAACTTCAAGCATGTTTATACGCAAATGCTCAAATCCCCATTTCAAGCATTTGAATAAAAATTTGGACGCCAAGTTTGATTCTAGTTTAAGTTGTGGTCCAGAGCTACAGGTAAGTGATGATAGAGTGAATGAAGGGGTCATGGTGATGGAAAATGGTAAAAAAACAAAGGTGGTACACCAGGATGAACTATTGCTACTCTTGGGAGAACAAGAGCATGAGGTTAGGTTTGCTAATTGTAGACCCATATATTTTGGAAACTTAGATGTGACCCATGTTGTGGATTGCTTATCTAGAAAATCTGTATGGCTTTCCCAGCTATTTTCGAAGCTTTCAAGTGAACTTTCAGACAGGAATGTTCAAAATCTTGGGGAGTATCTTCAAGTTGAATCATTTACACTGTCCATTTGCTCAAAAGAAAATTGCCCTTACAGAACTACAAATAGAATTGAAAATGAATCTGCTATGGTATTCTGTTGCTGTAGTTGGCTAGTTGCAGATGAAACCCTTGCATGGAAAATCATTTCCATCTTGGAGAAGCATAATCTCAGTTCAACATAA

mRNA sequence

ATGGATCTTGTGAAATTCCTTAGTCCCAAGCATGTGATACTTGTACATGGAGAGAAACCTAAAATGGCTGCTTTAAAGGAGAGGATTCATTCTGAACTGGGAATCCCATGTCATGATCCTGCAAATAATGAAACCGTATCCATTTCTTCAACTCTTTCTGTCAAAGCAGAAGCCTCAAGCATGTTTATTCAGAGTTGTTCCACTCCTAATTTCAAGTTCTTGAAAAGAAACTTGAATGATAAGATTGATTCCAATTTAAAAGATTTAAGTTGCAAAGCAGAAGGAACTTCAAGCATGTTTATACGCAAATGCTCAAATCCCCATTTCAAGCATTTGAATAAAAATTTGGACGCCAAGTTTGATTCTAGTTTAAGTTGTGGTCCAGAGCTACAGGTAAGTGATGATAGAGTGAATGAAGGGGTCATGGTGATGGAAAATGGTAAAAAAACAAAGGTGGTACACCAGGATGAACTATTGCTACTCTTGGGAGAACAAGAGCATGAGGTTAGGTTTGCTAATTGTAGACCCATATATTTTGGAAACTTAGATGTGACCCATGTTGTGGATTGCTTATCTAGAAAATCTGTATGGCTTTCCCAGCTATTTTCGAAGCTTTCAAGTGAACTTTCAGACAGGAATGTTCAAAATCTTGGGGAGTATCTTCAAGTTGAATCATTTACACTGTCCATTTGCTCAAAAGAAAATTGCCCTTACAGAACTACAAATAGAATTGAAAATGAATCTGCTATGGTATTCTGTTGCTGTAGTTGGCTAGTTGCAGATGAAACCCTTGCATGGAAAATCATTTCCATCTTGGAGAAGCATAATCTCAGTTCAACATAA

Coding sequence (CDS)

ATGGATCTTGTGAAATTCCTTAGTCCCAAGCATGTGATACTTGTACATGGAGAGAAACCTAAAATGGCTGCTTTAAAGGAGAGGATTCATTCTGAACTGGGAATCCCATGTCATGATCCTGCAAATAATGAAACCGTATCCATTTCTTCAACTCTTTCTGTCAAAGCAGAAGCCTCAAGCATGTTTATTCAGAGTTGTTCCACTCCTAATTTCAAGTTCTTGAAAAGAAACTTGAATGATAAGATTGATTCCAATTTAAAAGATTTAAGTTGCAAAGCAGAAGGAACTTCAAGCATGTTTATACGCAAATGCTCAAATCCCCATTTCAAGCATTTGAATAAAAATTTGGACGCCAAGTTTGATTCTAGTTTAAGTTGTGGTCCAGAGCTACAGGTAAGTGATGATAGAGTGAATGAAGGGGTCATGGTGATGGAAAATGGTAAAAAAACAAAGGTGGTACACCAGGATGAACTATTGCTACTCTTGGGAGAACAAGAGCATGAGGTTAGGTTTGCTAATTGTAGACCCATATATTTTGGAAACTTAGATGTGACCCATGTTGTGGATTGCTTATCTAGAAAATCTGTATGGCTTTCCCAGCTATTTTCGAAGCTTTCAAGTGAACTTTCAGACAGGAATGTTCAAAATCTTGGGGAGTATCTTCAAGTTGAATCATTTACACTGTCCATTTGCTCAAAAGAAAATTGCCCTTACAGAACTACAAATAGAATTGAAAATGAATCTGCTATGGTATTCTGTTGCTGTAGTTGGCTAGTTGCAGATGAAACCCTTGCATGGAAAATCATTTCCATCTTGGAGAAGCATAATCTCAGTTCAACATAA

Protein sequence

MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMFIRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQLFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENESAMVFCCCSWLVADETLAWKIISILEKHNLSST

Homology

[Close]

BLAST of Lsi10G002420 vs. ExPASy Swiss-Prot
Match: Q8GUU3 (Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thaliana OX=3702 GN=CPSF73-II PE=1 SV=2)

HSP 1 Score: 170.6 bits (431), Expect = 2.5e-41
Identity = 103/273 (37.73%), Postives = 140/273 (51.28%), Query Frame = 0


Query: 1   MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASS 60
           MDL KFLSPK+V+LVHGEKP M  LKE+I SEL IPC  PAN ETVS +ST  +KA AS 
Sbjct: 399 MDLTKFLSPKNVVLVHGEKPSMMILKEKITSELDIPCFVPANGETVSFASTTYIKANASD 458

Query: 61  MFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMFIRKCSNPHFKHLNKNLDAKF 120
           MF++SCS PNFKF                                               
Sbjct: 459 MFLKSCSNPNFKF----------------------------------------------- 518

Query: 121 DSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFG 180
               S   +L+V+D R  +GV+V+E  KK K+VHQDE+  +L E+ H V  A+C P+   
Sbjct: 519 ----SNSTQLRVTDHRTADGVLVIEKSKKAKIVHQDEISEVLHEKNHVVSLAHCCPVKVK 578

Query: 181 NLDVTHVVDCLSRKSVWLSQLFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRT 240
                  VD        + QL +K+   +S   +      LQV SF  S+C K+ C +R+
Sbjct: 579 GESEDDDVDL-------IKQLSAKILKTVSGAQIHESENCLQVASFKGSLCLKDKCMHRS 610

Query: 241 TNRIENESAMVFCCCSWLVADETLAWKIISILE 274
           ++   + S  VF CC+W +AD  L W+II+ ++
Sbjct: 639 SS---SSSEAVFLCCNWSIADLELGWEIINAIK 610

[Close]

BLAST of Lsi10G002420 vs. ExPASy Swiss-Prot
Match: Q54YL3 (Integrator complex subunit 11 homolog OS=Dictyostelium discoideum OX=44689 GN=ints11 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.9e-07
Identity = 37/123 (30.08%), Postives = 62/123 (50.41%), Query Frame = 0


Query: 1   MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASS 60
           + L+K  +P++VILVHGEK KM  L ++I  E+G+ C+ PAN  T+ I +  S+  + S 
Sbjct: 410 LQLIKMSNPRNVILVHGEKEKMGFLSQKIIKEMGVNCYYPANGVTIIIDTMKSIPIDISL 469

Query: 61  MFIQS-----------------CSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMFIRK 107
             ++                   +  N   L  N N+  +++LK +  K   TS++FI  
Sbjct: 470 NLLKRQILDYSYQYNNNNLNNFNNFNNLNNLNNNNNNNNNNSLKLIDIK-NNTSTLFINN 529

[Close]

BLAST of Lsi10G002420 vs. ExPASy Swiss-Prot
Match: Q503E1 (Integrator complex subunit 11 OS=Danio rerio OX=7955 GN=cpsf3l PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.7e-06
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 1   MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEAS 60
           M L++   P++++LVHGE  KM  LK++I  E  I C  PAN ET +I +  SV  + S
Sbjct: 399 MQLIRMAEPRNMLLVHGEAKKMEFLKDKIEQEFSISCFMPANGETTTIVTNPSVPVDIS 457

[Close]

BLAST of Lsi10G002420 vs. ExPASy Swiss-Prot
Match: Q5ZIH0 (Integrator complex subunit 11 OS=Gallus gallus OX=9031 GN=INTS11 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.8e-06
Identity = 24/59 (40.68%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 1   MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEAS 60
           M L++   P++V+LVHGE  KM  LK++I  E  + C+ PAN ET +I +  S+  + S
Sbjct: 399 MQLIRQAEPRNVLLVHGEAKKMEFLKQKIEQEFHVNCYMPANGETTTIFTNPSIPVDIS 457

[Close]

BLAST of Lsi10G002420 vs. ExPASy Swiss-Prot
Match: Q5NVE6 (Integrator complex subunit 11 OS=Pongo abelii OX=9601 GN=INTS11 PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 9.8e-06
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 1   MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSV 55
           M LV    P+ V+LVHGE  KM  LK++I  EL + C+ PAN ETV++ ++ S+
Sbjct: 399 MQLVGQAEPESVLLVHGEAKKMEFLKQKIEQELRVSCYMPANGETVTLPTSPSI 452

[Close]

BLAST of Lsi10G002420 vs. ExPASy TrEMBL
Match: A0A5D3C3J3 (Cleavage and polyadenylation specificity factor subunit 3-II OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00090 PE=4 SV=1)

HSP 1 Score: 503.4 bits (1295), Expect = 5.9e-139
Identity = 250/281 (88.97%), Postives = 264/281 (93.95%), Query Frame = 0


Query: 1   MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASS 60
           MDLVKFLSPKHVILVHGEKPKMA LKERIHSELGIPCHDPANNETVSISSTLS+KAEASS
Sbjct: 1   MDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASS 60

Query: 61  MFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMFIRKCSNPHFKHLNKNLDAKF 120
           MFIQSCSTPNFKFLKRNL DKID +LKDLS KA  TS+M IR+CSNPHFKHLN+NLDAKF
Sbjct: 61  MFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHFKHLNRNLDAKF 120

Query: 121 DSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFG 180
           DSSLSCGPELQVSDDRVNEG++VMENGKKTK +HQDELLLLLGEQEHEVRFA+CRPIYFG
Sbjct: 121 DSSLSCGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEVRFAHCRPIYFG 180

Query: 181 NLDVTHVVDCLSRKSVWLSQLFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRT 240
           +LD  HV+D LSRKS+WLSQL  KLS+ELSDRNVQNLGEYLQVES TLSICSKENCPYRT
Sbjct: 181 SLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLSICSKENCPYRT 240

Query: 241 TNRIENE-SAMVFCCCSWLVADETLAWKIISILEKHNLSST 281
           TNRIENE SAMVFCCCSWLVADE LAWKIISILEKH+L ST
Sbjct: 241 TNRIENESSAMVFCCCSWLVADEILAWKIISILEKHDLGST 281

[Close]

BLAST of Lsi10G002420 vs. ExPASy TrEMBL
Match: A0A1S3C9L2 (cleavage and polyadenylation specificity factor subunit 3-II OS=Cucumis melo OX=3656 GN=LOC103498350 PE=3 SV=1)

HSP 1 Score: 503.4 bits (1295), Expect = 5.9e-139
Identity = 250/281 (88.97%), Postives = 264/281 (93.95%), Query Frame = 0


Query: 1   MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASS 60
           MDLVKFLSPKHVILVHGEKPKMA LKERIHSELGIPCHDPANNETVSISSTLS+KAEASS
Sbjct: 399 MDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASS 458

Query: 61  MFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMFIRKCSNPHFKHLNKNLDAKF 120
           MFIQSCSTPNFKFLKRNL DKID +LKDLS KA  TS+M IR+CSNPHFKHLN+NLDAKF
Sbjct: 459 MFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHFKHLNRNLDAKF 518

Query: 121 DSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFG 180
           DSSLSCGPELQVSDDRVNEG++VMENGKKTK +HQDELLLLLGEQEHEVRFA+CRPIYFG
Sbjct: 519 DSSLSCGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEVRFAHCRPIYFG 578

Query: 181 NLDVTHVVDCLSRKSVWLSQLFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRT 240
           +LD  HV+D LSRKS+WLSQL  KLS+ELSDRNVQNLGEYLQVES TLSICSKENCPYRT
Sbjct: 579 SLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLSICSKENCPYRT 638

Query: 241 TNRIENE-SAMVFCCCSWLVADETLAWKIISILEKHNLSST 281
           TNRIENE SAMVFCCCSWLVADE LAWKIISILEKH+L ST
Sbjct: 639 TNRIENESSAMVFCCCSWLVADEILAWKIISILEKHDLGST 679

[Close]

BLAST of Lsi10G002420 vs. ExPASy TrEMBL
Match: A0A5A7TJQ1 (Cleavage and polyadenylation specificity factor subunit 3-II OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G001200 PE=4 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 1.3e-138
Identity = 250/281 (88.97%), Postives = 263/281 (93.59%), Query Frame = 0


Query: 1   MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASS 60
           MDLVKFLSPKHVILVHGEKPKMA LKERIHSELGIPCHDPANNETVSISSTLS+KAEASS
Sbjct: 1   MDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASS 60

Query: 61  MFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMFIRKCSNPHFKHLNKNLDAKF 120
           MFIQSCSTPNFKFLKRNL DKID +LKDLS KA  TS+M IR+CSNPHFKHLN+NLDAKF
Sbjct: 61  MFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHFKHLNRNLDAKF 120

Query: 121 DSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFG 180
           DSSLSCGPELQVSDDRVNEG++VMENGKKTK +HQDELLLLLGEQEHEVRFA+CRPIYFG
Sbjct: 121 DSSLSCGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEVRFAHCRPIYFG 180

Query: 181 NLDVTHVVDCLSRKSVWLSQLFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRT 240
           +LD  HV D LSRKS+WLSQL  KLS+ELSDRNVQNLGEYLQVES TLSICSKENCPYRT
Sbjct: 181 SLDEIHVKDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLSICSKENCPYRT 240

Query: 241 TNRIENES-AMVFCCCSWLVADETLAWKIISILEKHNLSST 281
           TNRIENES AMVFCCCSWLVADE LAWKIISILEKH+L ST
Sbjct: 241 TNRIENESTAMVFCCCSWLVADEILAWKIISILEKHDLGST 281

[Close]

BLAST of Lsi10G002420 vs. ExPASy TrEMBL
Match: Q6E435 (ACT11D09.9 OS=Cucumis melo OX=3656 GN=ACT11D09.9 PE=3 SV=1)

HSP 1 Score: 498.8 bits (1283), Expect = 1.5e-137
Identity = 249/281 (88.61%), Postives = 263/281 (93.59%), Query Frame = 0


Query: 1   MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASS 60
           MDLVKFLSPKHVILVHGEKPKMA LKERIHSELGIPCHDPANNETVSISSTLS+KAEASS
Sbjct: 428 MDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASS 487

Query: 61  MFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMFIRKCSNPHFKHLNKNLDAKF 120
           MFIQSCSTPNFKFLKRNL DKID +LKDLS KA  TS+M IR+CSNPHFKHLN+NLDAKF
Sbjct: 488 MFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHFKHLNRNLDAKF 547

Query: 121 DSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFG 180
           DSSLS GPELQVSDDRVNEG++VMENGKKTK +HQDELLLLLGEQEHEVRFA+CRPIYFG
Sbjct: 548 DSSLSGGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEVRFAHCRPIYFG 607

Query: 181 NLDVTHVVDCLSRKSVWLSQLFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRT 240
           +LD  HV+D LSRKS+WLSQL  KLS+ELSDRNVQNLGEYLQVES TLSICSKENCPYRT
Sbjct: 608 SLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLSICSKENCPYRT 667

Query: 241 TNRIENES-AMVFCCCSWLVADETLAWKIISILEKHNLSST 281
           TNRIENES AMVFCCCSWLVADE LAWKIISILEKH+L ST
Sbjct: 668 TNRIENESTAMVFCCCSWLVADEILAWKIISILEKHDLGST 708

[Close]

BLAST of Lsi10G002420 vs. ExPASy TrEMBL
Match: A0A6J1FTR8 (cleavage and polyadenylation specificity factor subunit 3-II isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448716 PE=4 SV=1)

HSP 1 Score: 495.7 bits (1275), Expect = 1.2e-136
Identity = 245/280 (87.50%), Postives = 261/280 (93.21%), Query Frame = 0


Query: 1   MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASS 60
           MDLVKFLSPKHVILVHGEKPKM  LKERIHSELGIPCHDPANNETVSISSTLS+KAE+SS
Sbjct: 370 MDLVKFLSPKHVILVHGEKPKMVTLKERIHSELGIPCHDPANNETVSISSTLSIKAESSS 429

Query: 61  MFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMFIRKCSNPHFKHLNKNLDAKF 120
           MFIQSCSTPNFKFLKRNLNDKI+S  K+LS K  GTSSMF R+ SNPH KHLN+NLD KF
Sbjct: 430 MFIQSCSTPNFKFLKRNLNDKINS--KELSSKEGGTSSMFFRRRSNPHVKHLNRNLDEKF 489

Query: 121 DSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFG 180
           DSSLSCGPEL+VSDDRVNEG++VMENGKKTKVVHQDELLLLLGEQEHEVRFANC PIYFG
Sbjct: 490 DSSLSCGPELEVSDDRVNEGILVMENGKKTKVVHQDELLLLLGEQEHEVRFANCSPIYFG 549

Query: 181 NLDVTHVVDCLSRKSVWLSQLFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRT 240
           +LD THV+DC+SRKS+WLSQL SKLSSELSDRNVQN GEYLQVESFTLSICSKE+CPYRT
Sbjct: 550 SLDDTHVMDCISRKSLWLSQLSSKLSSELSDRNVQNFGEYLQVESFTLSICSKESCPYRT 609

Query: 241 TNRIENESAMVFCCCSWLVADETLAWKIISILEKHNLSST 281
           TNRIENESA  F CCSWLVADE LAW+IISILEKH+LSST
Sbjct: 610 TNRIENESAAAFYCCSWLVADEVLAWQIISILEKHDLSST 647

[Close]

BLAST of Lsi10G002420 vs. NCBI nr
Match: XP_038901169.1 (cleavage and polyadenylation specificity factor subunit 3-II isoform X2 [Benincasa hispida])

HSP 1 Score: 516.9 bits (1330), Expect = 1.1e-142
Identity = 249/280 (88.93%), Postives = 267/280 (95.36%), Query Frame = 0


Query: 1   MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASS 60
           MDLVKFLSPKHVILVHGEKPKMA LK+RIHSELGIPC+DPANNETVSISSTLSVKAEAS 
Sbjct: 385 MDLVKFLSPKHVILVHGEKPKMATLKQRIHSELGIPCYDPANNETVSISSTLSVKAEASR 444

Query: 61  MFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMFIRKCSNPHFKHLNKNLDAKF 120
           MFIQSCSTPNFKFLKRNLN+K+D NLKDLSCKA GTS +FIRKCSN HFK+LN+NLD KF
Sbjct: 445 MFIQSCSTPNFKFLKRNLNNKVDPNLKDLSCKAGGTSRVFIRKCSNHHFKYLNRNLDTKF 504

Query: 121 DSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFG 180
           DSS SCGPELQVSDDRVNEG++VME GKKTKV+HQDE+LLLLGEQEHEVRFANCRPIYFG
Sbjct: 505 DSSFSCGPELQVSDDRVNEGILVMEKGKKTKVLHQDEVLLLLGEQEHEVRFANCRPIYFG 564

Query: 181 NLDVTHVVDCLSRKSVWLSQLFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRT 240
           NL+ THV+DCLSRKS+WLSQLFSKLSSELSD+NVQNLGEYLQVESFTLSICSKE+CPYRT
Sbjct: 565 NLEETHVMDCLSRKSLWLSQLFSKLSSELSDKNVQNLGEYLQVESFTLSICSKEDCPYRT 624

Query: 241 TNRIENESAMVFCCCSWLVADETLAWKIISILEKHNLSST 281
           TNRIENES +VFCCCSWL+ADE LAWKIISILEKHNL ST
Sbjct: 625 TNRIENESTIVFCCCSWLIADEILAWKIISILEKHNLGST 664

[Close]

BLAST of Lsi10G002420 vs. NCBI nr
Match: XP_038901174.1 (cleavage and polyadenylation specificity factor subunit 3-II isoform X6 [Benincasa hispida])

HSP 1 Score: 516.9 bits (1330), Expect = 1.1e-142
Identity = 249/280 (88.93%), Postives = 267/280 (95.36%), Query Frame = 0


Query: 1   MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASS 60
           MDLVKFLSPKHVILVHGEKPKMA LK+RIHSELGIPC+DPANNETVSISSTLSVKAEAS 
Sbjct: 304 MDLVKFLSPKHVILVHGEKPKMATLKQRIHSELGIPCYDPANNETVSISSTLSVKAEASR 363

Query: 61  MFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMFIRKCSNPHFKHLNKNLDAKF 120
           MFIQSCSTPNFKFLKRNLN+K+D NLKDLSCKA GTS +FIRKCSN HFK+LN+NLD KF
Sbjct: 364 MFIQSCSTPNFKFLKRNLNNKVDPNLKDLSCKAGGTSRVFIRKCSNHHFKYLNRNLDTKF 423

Query: 121 DSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFG 180
           DSS SCGPELQVSDDRVNEG++VME GKKTKV+HQDE+LLLLGEQEHEVRFANCRPIYFG
Sbjct: 424 DSSFSCGPELQVSDDRVNEGILVMEKGKKTKVLHQDEVLLLLGEQEHEVRFANCRPIYFG 483

Query: 181 NLDVTHVVDCLSRKSVWLSQLFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRT 240
           NL+ THV+DCLSRKS+WLSQLFSKLSSELSD+NVQNLGEYLQVESFTLSICSKE+CPYRT
Sbjct: 484 NLEETHVMDCLSRKSLWLSQLFSKLSSELSDKNVQNLGEYLQVESFTLSICSKEDCPYRT 543

Query: 241 TNRIENESAMVFCCCSWLVADETLAWKIISILEKHNLSST 281
           TNRIENES +VFCCCSWL+ADE LAWKIISILEKHNL ST
Sbjct: 544 TNRIENESTIVFCCCSWLIADEILAWKIISILEKHNLGST 583

[Close]

BLAST of Lsi10G002420 vs. NCBI nr
Match: XP_038901162.1 (cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Benincasa hispida] >XP_038901163.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Benincasa hispida] >XP_038901164.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Benincasa hispida] >XP_038901165.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Benincasa hispida] >XP_038901166.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Benincasa hispida] >XP_038901167.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Benincasa hispida] >XP_038901168.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Benincasa hispida])

HSP 1 Score: 516.9 bits (1330), Expect = 1.1e-142
Identity = 249/280 (88.93%), Postives = 267/280 (95.36%), Query Frame = 0


Query: 1   MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASS 60
           MDLVKFLSPKHVILVHGEKPKMA LK+RIHSELGIPC+DPANNETVSISSTLSVKAEAS 
Sbjct: 399 MDLVKFLSPKHVILVHGEKPKMATLKQRIHSELGIPCYDPANNETVSISSTLSVKAEASR 458

Query: 61  MFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMFIRKCSNPHFKHLNKNLDAKF 120
           MFIQSCSTPNFKFLKRNLN+K+D NLKDLSCKA GTS +FIRKCSN HFK+LN+NLD KF
Sbjct: 459 MFIQSCSTPNFKFLKRNLNNKVDPNLKDLSCKAGGTSRVFIRKCSNHHFKYLNRNLDTKF 518

Query: 121 DSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFG 180
           DSS SCGPELQVSDDRVNEG++VME GKKTKV+HQDE+LLLLGEQEHEVRFANCRPIYFG
Sbjct: 519 DSSFSCGPELQVSDDRVNEGILVMEKGKKTKVLHQDEVLLLLGEQEHEVRFANCRPIYFG 578

Query: 181 NLDVTHVVDCLSRKSVWLSQLFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRT 240
           NL+ THV+DCLSRKS+WLSQLFSKLSSELSD+NVQNLGEYLQVESFTLSICSKE+CPYRT
Sbjct: 579 NLEETHVMDCLSRKSLWLSQLFSKLSSELSDKNVQNLGEYLQVESFTLSICSKEDCPYRT 638

Query: 241 TNRIENESAMVFCCCSWLVADETLAWKIISILEKHNLSST 281
           TNRIENES +VFCCCSWL+ADE LAWKIISILEKHNL ST
Sbjct: 639 TNRIENESTIVFCCCSWLIADEILAWKIISILEKHNLGST 678

[Close]

BLAST of Lsi10G002420 vs. NCBI nr
Match: TYK06483.1 (cleavage and polyadenylation specificity factor subunit 3-II [Cucumis melo var. makuwa])

HSP 1 Score: 503.4 bits (1295), Expect = 1.2e-138
Identity = 250/281 (88.97%), Postives = 264/281 (93.95%), Query Frame = 0


Query: 1   MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASS 60
           MDLVKFLSPKHVILVHGEKPKMA LKERIHSELGIPCHDPANNETVSISSTLS+KAEASS
Sbjct: 1   MDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASS 60

Query: 61  MFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMFIRKCSNPHFKHLNKNLDAKF 120
           MFIQSCSTPNFKFLKRNL DKID +LKDLS KA  TS+M IR+CSNPHFKHLN+NLDAKF
Sbjct: 61  MFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHFKHLNRNLDAKF 120

Query: 121 DSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFG 180
           DSSLSCGPELQVSDDRVNEG++VMENGKKTK +HQDELLLLLGEQEHEVRFA+CRPIYFG
Sbjct: 121 DSSLSCGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEVRFAHCRPIYFG 180

Query: 181 NLDVTHVVDCLSRKSVWLSQLFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRT 240
           +LD  HV+D LSRKS+WLSQL  KLS+ELSDRNVQNLGEYLQVES TLSICSKENCPYRT
Sbjct: 181 SLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLSICSKENCPYRT 240

Query: 241 TNRIENE-SAMVFCCCSWLVADETLAWKIISILEKHNLSST 281
           TNRIENE SAMVFCCCSWLVADE LAWKIISILEKH+L ST
Sbjct: 241 TNRIENESSAMVFCCCSWLVADEILAWKIISILEKHDLGST 281

[Close]

BLAST of Lsi10G002420 vs. NCBI nr
Match: XP_008459147.1 (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II [Cucumis melo])

HSP 1 Score: 503.4 bits (1295), Expect = 1.2e-138
Identity = 250/281 (88.97%), Postives = 264/281 (93.95%), Query Frame = 0


Query: 1   MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASS 60
           MDLVKFLSPKHVILVHGEKPKMA LKERIHSELGIPCHDPANNETVSISSTLS+KAEASS
Sbjct: 399 MDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASS 458

Query: 61  MFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMFIRKCSNPHFKHLNKNLDAKF 120
           MFIQSCSTPNFKFLKRNL DKID +LKDLS KA  TS+M IR+CSNPHFKHLN+NLDAKF
Sbjct: 459 MFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHFKHLNRNLDAKF 518

Query: 121 DSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFG 180
           DSSLSCGPELQVSDDRVNEG++VMENGKKTK +HQDELLLLLGEQEHEVRFA+CRPIYFG
Sbjct: 519 DSSLSCGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEVRFAHCRPIYFG 578

Query: 181 NLDVTHVVDCLSRKSVWLSQLFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRT 240
           +LD  HV+D LSRKS+WLSQL  KLS+ELSDRNVQNLGEYLQVES TLSICSKENCPYRT
Sbjct: 579 SLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLSICSKENCPYRT 638

Query: 241 TNRIENE-SAMVFCCCSWLVADETLAWKIISILEKHNLSST 281
           TNRIENE SAMVFCCCSWLVADE LAWKIISILEKH+L ST
Sbjct: 639 TNRIENESSAMVFCCCSWLVADEILAWKIISILEKHDLGST 679

[Close]

BLAST of Lsi10G002420 vs. TAIR 10
Match: AT2G01730.1 (cleavage and polyadenylation specificity factor 73 kDa subunit-II )

HSP 1 Score: 170.6 bits (431), Expect = 1.8e-42
Identity = 103/273 (37.73%), Postives = 140/273 (51.28%), Query Frame = 0


Query: 1   MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASS 60
           MDL KFLSPK+V+LVHGEKP M  LKE+I SEL IPC  PAN ETVS +ST  +KA AS 
Sbjct: 399 MDLTKFLSPKNVVLVHGEKPSMMILKEKITSELDIPCFVPANGETVSFASTTYIKANASD 458

Query: 61  MFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMFIRKCSNPHFKHLNKNLDAKF 120
           MF++SCS PNFKF                                               
Sbjct: 459 MFLKSCSNPNFKF----------------------------------------------- 518

Query: 121 DSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFG 180
               S   +L+V+D R  +GV+V+E  KK K+VHQDE+  +L E+ H V  A+C P+   
Sbjct: 519 ----SNSTQLRVTDHRTADGVLVIEKSKKAKIVHQDEISEVLHEKNHVVSLAHCCPVKVK 578

Query: 181 NLDVTHVVDCLSRKSVWLSQLFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRT 240
                  VD        + QL +K+   +S   +      LQV SF  S+C K+ C +R+
Sbjct: 579 GESEDDDVDL-------IKQLSAKILKTVSGAQIHESENCLQVASFKGSLCLKDKCMHRS 610

Query: 241 TNRIENESAMVFCCCSWLVADETLAWKIISILE 274
           ++   + S  VF CC+W +AD  L W+II+ ++
Sbjct: 639 SS---SSSEAVFLCCNWSIADLELGWEIINAIK 610

The following BLAST results are available for this feature:

BLAST of Lsi10G002420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GUU3	2.5e-41	37.73	Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thal...	[more]
Q54YL3	8.9e-07	30.08	Integrator complex subunit 11 homolog OS=Dictyostelium discoideum OX=44689 GN=in...	[more]
Q503E1	5.7e-06	42.37	Integrator complex subunit 11 OS=Danio rerio OX=7955 GN=cpsf3l PE=2 SV=1	[more]
Q5ZIH0	9.8e-06	40.68	Integrator complex subunit 11 OS=Gallus gallus OX=9031 GN=INTS11 PE=2 SV=1	[more]
Q5NVE6	9.8e-06	46.30	Integrator complex subunit 11 OS=Pongo abelii OX=9601 GN=INTS11 PE=2 SV=2	[more]

BLAST of Lsi10G002420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C3J3	5.9e-139	88.97	Cleavage and polyadenylation specificity factor subunit 3-II OS=Cucumis melo var...	[more]
A0A1S3C9L2	5.9e-139	88.97	cleavage and polyadenylation specificity factor subunit 3-II OS=Cucumis melo OX=...	[more]
A0A5A7TJQ1	1.3e-138	88.97	Cleavage and polyadenylation specificity factor subunit 3-II OS=Cucumis melo var...	[more]
Q6E435	1.5e-137	88.61	ACT11D09.9 OS=Cucumis melo OX=3656 GN=ACT11D09.9 PE=3 SV=1	[more]
A0A6J1FTR8	1.2e-136	87.50	cleavage and polyadenylation specificity factor subunit 3-II isoform X2 OS=Cucur...	[more]

BLAST of Lsi10G002420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901169.1	1.1e-142	88.93	cleavage and polyadenylation specificity factor subunit 3-II isoform X2 [Beninca...	[more]
XP_038901174.1	1.1e-142	88.93	cleavage and polyadenylation specificity factor subunit 3-II isoform X6 [Beninca...	[more]
XP_038901162.1	1.1e-142	88.93	cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Beninca...	[more]
TYK06483.1	1.2e-138	88.97	cleavage and polyadenylation specificity factor subunit 3-II [Cucumis melo var. ...	[more]
XP_008459147.1	1.2e-138	88.97	PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II [Cucumis...	[more]

BLAST of Lsi10G002420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01730.1	1.8e-42	37.73	cleavage and polyadenylation specificity factor 73 kDa subunit-II	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011108	Zn-dependent metallo-hydrolase, RNA specificity domain	PFAM	PF07521	RMMBL	coord: 1..38 e-value: 2.7E-8 score: 33.7
None	No IPR available	PANTHER	PTHR11203:SF37	INTEGRATOR COMPLEX SUBUNIT 11	coord: 1..274
None	No IPR available	PANTHER	PTHR11203	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER	coord: 1..274
IPR036866	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	SUPERFAMILY	56281	Metallo-hydrolase/oxidoreductase	coord: 2..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G002420.1	Lsi10G002420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010197	polar nucleus fusion
biological_process	GO:0016180	snRNA processing
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus