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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATCAAACACAAAACAAAACGAAATCAAACTGACAGCAGGCAGAGAGAGAGAAAGAGAGAGAAGAAATAAAAAAGAAAGGGTTGAGGTAAGATTACTGGTGGGATGATGGAAGAACCTATGAGAAATGGACTCGAAGCTCTTCTGAATAGGGAGTACAAGATCAGGTGGAACAGGCAGACCTGCCATCATATATTTGAAGATCAGAGCCTGATGCTCCAGCTCCTGCCACTGTAACACTGTGAAAGGTGACCTATTCATCCCCATCATTCCACTTGCTGTTGCTGCTGCTGCTACTGTCCTACTCCCATCCTCACTACCACCGCCACTGTTGTTCATAATAACCACCACCAGAGAAAGAGAGAGAGTTTATTCCTCCGCCTCCGCCTCCACCGCCGACCACCACCAGTTTCTCTAGTAAGTAATCCTGAAAACCCAGAACCCCTTTTAGCTAAAACACCCAGAAATCTTCAAACATAATCTGAGACAGAGAAGAAAATCATGGGACATAGATCAGCCTCTGTCTCCACCATCTGGATTGCTCTCACTGTCACTCTCTGTAGTGTTTGTTTTTAGTGTCCGAAGGTTTGTGTGGGTAAAGGGGGGGCAGTATCTGTATCTGTGGAGGAACCGAAGGAGGCCAAGTTTGGTCTCATTTTTATTTTTGGGTATTTGGGATTTTGGGTATTGGATATTGGAGGATTTAGCTTTAAAAGATTAGCTCTTTTTGCTTTTAGG mRNA sequence ATCAAACACAAAACAAAACGAAATCAAACTGACAGCAGGCAGAGAGAGAGAAAGAGAGAGAAGAAATAAAAAAGAAAGGGTTGAGGTAAGATTACTGGTGGGATGATGGAAGAACCTATGAGAAATGGACTCGAAGCTCTTCTGAATAGGGAGTACAAGATCAGGTGGAACAGGCAGACCTGCCATCATATATTTGAAGATCAGAGCCTGATGCTCCAGCTCCTGCCACTGTAACACTGTGAAAGGTGACCTATTCATCCCCATCATTCCACTTGCTGTTGCTGCTGCTGCTACTGTCCTACTCCCATCCTCACTACCACCGCCACTGTTGTTCATAATAACCACCACCAGAGAAAGAGAGAGAGTTTATTCCTCCGCCTCCGCCTCCACCGCCGACCACCACCAGTTTCTCTAAGAAGAAAATCATGGGACATAGATCAGCCTCTGTCTCCACCATCTGGATTGCTCTCACTGTCACTCTCTGTAGTTGTCCGAAGGTTTGTGTGGGTAAAGGGGGGGCAGTATCTGTATCTGTGGAGGAACCGAAGGAGGCCAAGTTTGGTCTCATTTTTATTTTTGGGTATTTGGGATTTTGGGTATTGGATATTGGAGGATTTAGCTTTAAAAGATTAGCTCTTTTTGCTTTTAGG Coding sequence (CDS) ATGGGACATAGATCAGCCTCTGTCTCCACCATCTGGATTGCTCTCACTGTCACTCTCTGTAGTTGTCCGAAGGTTTGTGTGGGTAAAGGGGGGGCAGTATCTGTATCTGTGGAGGAACCGAAGGAGGCCAAGTTTGGTCTCATTTTTATTTTTGGGTATTTGGGATTTTGGGTATTGGATATTGGAGGATTTAGCTTTAAAAGATTAGCTCTTTTTGCTTTTAGG Protein sequence MGHRSASVSTIWIALTVTLCSCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFWVLDIGGFSFKRLALFAFR
Homology
BLAST of Lsi10G002230 vs. ExPASy TrEMBL
Match: A0A0A0LTL4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G432240 PE=4 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 6.4e-24 Identity = 62/79 (78.48%), Postives = 65/79 (82.28%), Query Frame = 0
Query: 1 MGHRSASVSTIWIALTVTLCSCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGF---- 60
MGHRSASVSTIWIALT CPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGF
Sbjct: 1 MGHRSASVSTIWIALT-----CPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFGILG 60
Query: 61 -WVLDIGGFSFKRLALFAF 75
WVLDIGGF K+++ F F
Sbjct: 61 IWVLDIGGFGIKKISSFCF 74
BLAST of Lsi10G002230 vs. NCBI nr
Match: KGN63356.1 (hypothetical protein Csa_022513 [Cucumis sativus]) HSP 1 Score: 119.4 bits (298), Expect = 1.3e-23 Identity = 62/79 (78.48%), Postives = 65/79 (82.28%), Query Frame = 0
Query: 1 MGHRSASVSTIWIALTVTLCSCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGF---- 60
MGHRSASVSTIWIALT CPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGF
Sbjct: 1 MGHRSASVSTIWIALT-----CPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFGILG 60
Query: 61 -WVLDIGGFSFKRLALFAF 75
WVLDIGGF K+++ F F
Sbjct: 61 IWVLDIGGFGIKKISSFCF 74
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LTL4 | 6.4e-24 | 78.48 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G432240 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN63356.1 | 1.3e-23 | 78.48 | hypothetical protein Csa_022513 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | PROSITE | PS51257 | PROKAR_LIPOPROTEIN | coord: 1..22
score: 5.0 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
|
